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Genes within 1Mb (chr1:47632514:G:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123472 ATPAF1 958647 sc-eQTL 8.38e-01 -0.0183 0.0893 0.09 B L1
ENSG00000132122 SPATA6 -839694 sc-eQTL 1.22e-01 0.23 0.148 0.09 B L1
ENSG00000159658 EFCAB14 913400 sc-eQTL 3.75e-01 0.0768 0.0864 0.09 B L1
ENSG00000162368 CMPK1 298717 sc-eQTL 1.89e-01 0.135 0.103 0.09 B L1
ENSG00000123472 ATPAF1 958647 sc-eQTL 3.09e-01 0.0833 0.0816 0.09 CD4T L1
ENSG00000132122 SPATA6 -839694 sc-eQTL 2.42e-01 -0.168 0.143 0.09 CD4T L1
ENSG00000159658 EFCAB14 913400 sc-eQTL 3.81e-01 0.0649 0.0739 0.09 CD4T L1
ENSG00000162368 CMPK1 298717 sc-eQTL 6.72e-01 -0.0406 0.0955 0.09 CD4T L1
ENSG00000123472 ATPAF1 958647 sc-eQTL 8.05e-01 -0.0259 0.105 0.09 CD8T L1
ENSG00000159658 EFCAB14 913400 sc-eQTL 1.91e-01 0.11 0.084 0.09 CD8T L1
ENSG00000162368 CMPK1 298717 sc-eQTL 4.54e-01 -0.0655 0.0873 0.09 CD8T L1
ENSG00000123472 ATPAF1 958647 sc-eQTL 1.97e-01 -0.176 0.136 0.092 DC L1
ENSG00000123473 STIL 318367 sc-eQTL 1.21e-01 -0.201 0.129 0.092 DC L1
ENSG00000132122 SPATA6 -839694 sc-eQTL 3.73e-01 -0.13 0.145 0.092 DC L1
ENSG00000159658 EFCAB14 913400 sc-eQTL 6.15e-01 -0.0645 0.128 0.092 DC L1
ENSG00000162366 PDZK1IP1 441470 sc-eQTL 9.89e-01 -0.00169 0.123 0.092 DC L1
ENSG00000162368 CMPK1 298717 sc-eQTL 2.10e-01 0.153 0.121 0.092 DC L1
ENSG00000123472 ATPAF1 958647 sc-eQTL 7.60e-01 0.0365 0.119 0.09 Mono L1
ENSG00000132122 SPATA6 -839694 sc-eQTL 8.99e-01 -0.0138 0.109 0.09 Mono L1
ENSG00000159658 EFCAB14 913400 sc-eQTL 1.55e-01 0.137 0.0958 0.09 Mono L1
ENSG00000162368 CMPK1 298717 sc-eQTL 9.13e-01 -0.0118 0.108 0.09 Mono L1
ENSG00000123472 ATPAF1 958647 sc-eQTL 1.15e-02 0.285 0.112 0.09 NK L1
ENSG00000159658 EFCAB14 913400 sc-eQTL 8.86e-01 0.0132 0.0922 0.09 NK L1
ENSG00000162368 CMPK1 298717 sc-eQTL 8.03e-01 -0.0221 0.0885 0.09 NK L1
ENSG00000123472 ATPAF1 958647 sc-eQTL 7.94e-01 -0.0251 0.0961 0.09 Other_T L1
ENSG00000123473 STIL 318367 sc-eQTL 7.17e-02 -0.14 0.0771 0.09 Other_T L1
ENSG00000159658 EFCAB14 913400 sc-eQTL 7.21e-01 0.0339 0.0949 0.09 Other_T L1
ENSG00000162368 CMPK1 298717 sc-eQTL 1.68e-01 -0.169 0.122 0.09 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123472 ATPAF1 958647 sc-eQTL 8.48e-01 0.0313 0.163 0.097 B_Activated L2
ENSG00000132122 SPATA6 -839694 sc-eQTL 1.81e-01 0.177 0.132 0.097 B_Activated L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 2.41e-03 0.503 0.163 0.097 B_Activated L2
ENSG00000162368 CMPK1 298717 sc-eQTL 4.59e-01 0.118 0.159 0.097 B_Activated L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 5.68e-01 0.0768 0.134 0.088 B_Intermediate L2
ENSG00000132122 SPATA6 -839694 sc-eQTL 2.70e-01 0.168 0.152 0.088 B_Intermediate L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 5.18e-01 0.0859 0.133 0.088 B_Intermediate L2
ENSG00000162368 CMPK1 298717 sc-eQTL 8.90e-01 -0.0178 0.129 0.088 B_Intermediate L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 7.80e-01 -0.0418 0.15 0.084 B_Memory L2
ENSG00000132122 SPATA6 -839694 sc-eQTL 2.31e-01 0.169 0.141 0.084 B_Memory L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 6.14e-01 0.0713 0.141 0.084 B_Memory L2
ENSG00000162368 CMPK1 298717 sc-eQTL 2.53e-01 0.158 0.138 0.084 B_Memory L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 8.71e-01 0.0209 0.129 0.09 B_Naive1 L2
ENSG00000132122 SPATA6 -839694 sc-eQTL 7.31e-01 0.0538 0.156 0.09 B_Naive1 L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 3.95e-01 0.0934 0.109 0.09 B_Naive1 L2
ENSG00000162368 CMPK1 298717 sc-eQTL 9.56e-02 0.209 0.125 0.09 B_Naive1 L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 6.11e-01 -0.0729 0.143 0.086 B_Naive2 L2
ENSG00000132122 SPATA6 -839694 sc-eQTL 3.44e-01 -0.153 0.161 0.086 B_Naive2 L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 3.89e-01 0.106 0.123 0.086 B_Naive2 L2
ENSG00000162368 CMPK1 298717 sc-eQTL 4.18e-01 0.108 0.134 0.086 B_Naive2 L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 3.59e-01 -0.131 0.142 0.095 CD4_CTL L2
ENSG00000132122 SPATA6 -839694 sc-eQTL 5.24e-01 0.0811 0.127 0.095 CD4_CTL L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 1.39e-01 0.206 0.139 0.095 CD4_CTL L2
ENSG00000162368 CMPK1 298717 sc-eQTL 1.95e-02 -0.334 0.142 0.095 CD4_CTL L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 8.70e-01 0.015 0.0912 0.09 CD4_Naive L2
ENSG00000132122 SPATA6 -839694 sc-eQTL 2.29e-01 -0.179 0.149 0.09 CD4_Naive L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 5.35e-01 0.0498 0.0802 0.09 CD4_Naive L2
ENSG00000162368 CMPK1 298717 sc-eQTL 8.54e-01 0.0169 0.0916 0.09 CD4_Naive L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 4.55e-01 0.0863 0.115 0.09 CD4_TCM L2
ENSG00000132122 SPATA6 -839694 sc-eQTL 2.10e-01 -0.183 0.145 0.09 CD4_TCM L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 9.01e-01 0.0123 0.0988 0.09 CD4_TCM L2
ENSG00000162368 CMPK1 298717 sc-eQTL 4.08e-01 -0.0836 0.101 0.09 CD4_TCM L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 2.86e-01 0.128 0.12 0.09 CD4_TEM L2
ENSG00000132122 SPATA6 -839694 sc-eQTL 9.04e-01 0.019 0.158 0.09 CD4_TEM L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 3.28e-01 -0.114 0.116 0.09 CD4_TEM L2
ENSG00000162368 CMPK1 298717 sc-eQTL 8.34e-01 -0.0274 0.13 0.09 CD4_TEM L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 1.64e-01 -0.164 0.117 0.09 CD8_CTL L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 2.05e-01 0.148 0.116 0.09 CD8_CTL L2
ENSG00000162368 CMPK1 298717 sc-eQTL 8.36e-01 -0.0242 0.117 0.09 CD8_CTL L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 9.45e-01 -0.00776 0.112 0.09 CD8_Naive L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 1.03e-01 0.2 0.122 0.09 CD8_Naive L2
ENSG00000162368 CMPK1 298717 sc-eQTL 4.88e-01 -0.0797 0.115 0.09 CD8_Naive L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 6.92e-01 -0.0546 0.138 0.093 CD8_TCM L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 6.35e-01 -0.0663 0.139 0.093 CD8_TCM L2
ENSG00000162368 CMPK1 298717 sc-eQTL 3.58e-01 -0.12 0.131 0.093 CD8_TCM L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 7.16e-02 0.27 0.149 0.089 CD8_TEM L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 6.21e-01 0.0739 0.149 0.089 CD8_TEM L2
ENSG00000162368 CMPK1 298717 sc-eQTL 7.42e-01 0.0491 0.149 0.089 CD8_TEM L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 3.71e-01 0.112 0.124 0.091 MAIT L2
ENSG00000123473 STIL 318367 sc-eQTL 8.44e-01 -0.0244 0.124 0.091 MAIT L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 9.24e-01 0.0116 0.122 0.091 MAIT L2
ENSG00000162368 CMPK1 298717 sc-eQTL 2.87e-01 -0.132 0.123 0.091 MAIT L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 2.17e-01 0.172 0.139 0.093 NK_CD56bright L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 5.75e-01 0.0795 0.142 0.093 NK_CD56bright L2
ENSG00000162368 CMPK1 298717 sc-eQTL 3.28e-02 -0.302 0.141 0.093 NK_CD56bright L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 7.64e-02 0.224 0.126 0.091 NK_CD56dim L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 9.78e-01 0.00286 0.106 0.091 NK_CD56dim L2
ENSG00000162368 CMPK1 298717 sc-eQTL 6.41e-01 0.0503 0.108 0.091 NK_CD56dim L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 2.62e-01 0.166 0.147 0.096 NK_HLA L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 9.07e-02 0.209 0.123 0.096 NK_HLA L2
ENSG00000162368 CMPK1 298717 sc-eQTL 9.86e-01 -0.00241 0.137 0.096 NK_HLA L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 4.23e-01 0.101 0.126 0.091 NK_cytokine L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 8.93e-01 -0.0161 0.119 0.091 NK_cytokine L2
ENSG00000162368 CMPK1 298717 sc-eQTL 7.27e-01 -0.0454 0.13 0.091 NK_cytokine L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 7.36e-01 -0.0434 0.128 0.089 PB L2
ENSG00000132122 SPATA6 -839694 sc-eQTL 1.50e-01 0.185 0.128 0.089 PB L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 8.36e-01 0.0346 0.167 0.089 PB L2
ENSG00000162368 CMPK1 298717 sc-eQTL 6.62e-01 -0.0754 0.172 0.089 PB L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 2.15e-01 -0.152 0.122 0.091 Pro_T L2
ENSG00000123473 STIL 318367 sc-eQTL 1.41e-01 -0.14 0.0946 0.091 Pro_T L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 2.56e-01 -0.143 0.125 0.091 Pro_T L2
ENSG00000162368 CMPK1 298717 sc-eQTL 2.06e-01 -0.176 0.139 0.091 Pro_T L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 2.68e-01 0.147 0.133 0.09 Treg L2
ENSG00000132122 SPATA6 -839694 sc-eQTL 2.31e-01 -0.159 0.132 0.09 Treg L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 2.43e-01 0.153 0.131 0.09 Treg L2
ENSG00000162368 CMPK1 298717 sc-eQTL 1.06e-01 -0.194 0.12 0.09 Treg L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 7.53e-01 -0.0466 0.148 0.09 cDC L2
ENSG00000123473 STIL 318367 sc-eQTL 6.32e-01 -0.0616 0.128 0.09 cDC L2
ENSG00000132122 SPATA6 -839694 sc-eQTL 9.20e-01 -0.0152 0.152 0.09 cDC L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 3.98e-01 -0.125 0.148 0.09 cDC L2
ENSG00000162366 PDZK1IP1 441470 sc-eQTL 8.74e-01 0.0196 0.124 0.09 cDC L2
ENSG00000162368 CMPK1 298717 sc-eQTL 6.82e-01 0.0573 0.14 0.09 cDC L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 7.52e-01 0.0399 0.126 0.09 cMono_IL1B L2
ENSG00000132122 SPATA6 -839694 sc-eQTL 6.19e-01 -0.0648 0.13 0.09 cMono_IL1B L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 7.26e-02 0.194 0.108 0.09 cMono_IL1B L2
ENSG00000162368 CMPK1 298717 sc-eQTL 4.13e-01 -0.0967 0.118 0.09 cMono_IL1B L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 1.64e-01 -0.195 0.139 0.09 cMono_S100A L2
ENSG00000132122 SPATA6 -839694 sc-eQTL 5.33e-01 0.0884 0.142 0.09 cMono_S100A L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 4.21e-01 0.0947 0.117 0.09 cMono_S100A L2
ENSG00000162368 CMPK1 298717 sc-eQTL 6.93e-01 0.0539 0.136 0.09 cMono_S100A L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 9.69e-01 0.0064 0.166 0.088 gdT L2
ENSG00000123473 STIL 318367 sc-eQTL 2.29e-01 -0.177 0.147 0.088 gdT L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 3.11e-01 -0.163 0.161 0.088 gdT L2
ENSG00000162368 CMPK1 298717 sc-eQTL 7.57e-01 0.0532 0.172 0.088 gdT L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 5.93e-01 0.0829 0.155 0.089 intMono L2
ENSG00000132122 SPATA6 -839694 sc-eQTL 4.38e-01 0.115 0.148 0.089 intMono L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 9.88e-01 -0.00191 0.127 0.089 intMono L2
ENSG00000162368 CMPK1 298717 sc-eQTL 4.61e-01 0.108 0.146 0.089 intMono L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 3.65e-02 0.296 0.141 0.093 ncMono L2
ENSG00000132122 SPATA6 -839694 sc-eQTL 5.31e-01 -0.0742 0.118 0.093 ncMono L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 1.40e-01 -0.207 0.14 0.093 ncMono L2
ENSG00000162368 CMPK1 298717 sc-eQTL 3.36e-01 0.133 0.138 0.093 ncMono L2
ENSG00000123472 ATPAF1 958647 sc-eQTL 2.05e-01 -0.231 0.181 0.085 pDC L2
ENSG00000123473 STIL 318367 sc-eQTL 6.24e-01 -0.0735 0.15 0.085 pDC L2
ENSG00000132122 SPATA6 -839694 sc-eQTL 5.18e-01 -0.11 0.169 0.085 pDC L2
ENSG00000159658 EFCAB14 913400 sc-eQTL 5.29e-01 0.0973 0.154 0.085 pDC L2
ENSG00000162366 PDZK1IP1 441470 sc-eQTL 8.60e-01 -0.0243 0.138 0.085 pDC L2
ENSG00000162368 CMPK1 298717 sc-eQTL 1.18e-01 0.256 0.163 0.085 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123472 ATPAF1 958647 sc-eQTL 7.11e-01 0.0438 0.118 0.09 B_Memory LOneK1K
ENSG00000132122 SPATA6 -839694 sc-eQTL 5.35e-02 0.287 0.148 0.09 B_Memory LOneK1K
ENSG00000159658 EFCAB14 913400 sc-eQTL 2.23e-01 0.143 0.117 0.09 B_Memory LOneK1K
ENSG00000162368 CMPK1 298717 sc-eQTL 3.28e-01 0.117 0.119 0.09 B_Memory LOneK1K
ENSG00000123472 ATPAF1 958647 sc-eQTL 5.25e-01 -0.0821 0.129 0.09 B_Naive LOneK1K
ENSG00000132122 SPATA6 -839694 sc-eQTL 8.67e-01 0.0265 0.158 0.09 B_Naive LOneK1K
ENSG00000159658 EFCAB14 913400 sc-eQTL 3.01e-01 0.104 0.101 0.09 B_Naive LOneK1K
ENSG00000162368 CMPK1 298717 sc-eQTL 2.38e-01 0.146 0.123 0.09 B_Naive LOneK1K
ENSG00000123472 ATPAF1 958647 sc-eQTL 5.14e-01 -0.0797 0.122 0.09 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -839694 sc-eQTL 7.27e-01 -0.0441 0.126 0.09 CD14_Mono LOneK1K
ENSG00000159658 EFCAB14 913400 sc-eQTL 3.72e-02 0.209 0.0997 0.09 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 298717 sc-eQTL 7.76e-01 -0.0311 0.109 0.09 CD14_Mono LOneK1K
ENSG00000123472 ATPAF1 958647 sc-eQTL 4.12e-02 0.273 0.133 0.091 CD16_Mono LOneK1K
ENSG00000132122 SPATA6 -839694 sc-eQTL 8.30e-01 -0.0233 0.108 0.091 CD16_Mono LOneK1K
ENSG00000159658 EFCAB14 913400 sc-eQTL 9.07e-02 -0.213 0.125 0.091 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 298717 sc-eQTL 2.12e-01 0.158 0.126 0.091 CD16_Mono LOneK1K
ENSG00000123472 ATPAF1 958647 sc-eQTL 4.79e-02 0.227 0.114 0.091 NK_CD56dim LOneK1K
ENSG00000159658 EFCAB14 913400 sc-eQTL 9.73e-01 0.0032 0.0959 0.091 NK_CD56dim LOneK1K
ENSG00000162368 CMPK1 298717 sc-eQTL 9.72e-01 -0.00322 0.0905 0.091 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000226252 AL135960.1 406717 eQTL 0.0482 -0.0932 0.0471 0.0 0.0 0.0913
ENSG00000237424 FOXD2-AS1 197873 eQTL 0.00732 0.114 0.0423 0.00182 0.0 0.0913

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000132122 \N -839694 2.67e-07 1.27e-07 5.64e-08 1.81e-07 1.01e-07 9.48e-08 1.6e-07 5.43e-08 1.45e-07 5.67e-08 1.55e-07 9.19e-08 1.47e-07 7.13e-08 6.12e-08 7.49e-08 4.24e-08 1.4e-07 6.07e-08 4.21e-08 1.26e-07 1.24e-07 1.44e-07 2.91e-08 1.5e-07 1.26e-07 1.1e-07 9.74e-08 1.23e-07 9.49e-08 1.02e-07 3.59e-08 3.43e-08 8e-08 6.67e-08 3.04e-08 5.22e-08 9.03e-08 6.86e-08 3.86e-08 5.45e-08 1.33e-07 5.12e-08 1.17e-08 3.81e-08 1.87e-08 1.11e-07 1.9e-09 4.81e-08