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Genes within 1Mb (chr1:47625693:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123472 ATPAF1 951826 sc-eQTL 8.22e-01 -0.0118 0.0523 0.53 B L1
ENSG00000132122 SPATA6 -846515 sc-eQTL 1.61e-03 -0.272 0.0851 0.53 B L1
ENSG00000159658 EFCAB14 906579 sc-eQTL 9.09e-01 -0.00582 0.0507 0.53 B L1
ENSG00000162368 CMPK1 291896 sc-eQTL 3.01e-02 -0.13 0.0597 0.53 B L1
ENSG00000123472 ATPAF1 951826 sc-eQTL 8.86e-01 -0.00715 0.0498 0.53 CD4T L1
ENSG00000132122 SPATA6 -846515 sc-eQTL 1.70e-01 0.119 0.0867 0.53 CD4T L1
ENSG00000159658 EFCAB14 906579 sc-eQTL 5.48e-01 -0.0271 0.0451 0.53 CD4T L1
ENSG00000162368 CMPK1 291896 sc-eQTL 6.70e-01 -0.0248 0.0582 0.53 CD4T L1
ENSG00000123472 ATPAF1 951826 sc-eQTL 5.57e-01 -0.0373 0.0634 0.53 CD8T L1
ENSG00000159658 EFCAB14 906579 sc-eQTL 8.98e-01 -0.00654 0.0512 0.53 CD8T L1
ENSG00000162368 CMPK1 291896 sc-eQTL 5.63e-01 -0.0307 0.053 0.53 CD8T L1
ENSG00000123472 ATPAF1 951826 sc-eQTL 7.69e-01 0.0254 0.0861 0.525 DC L1
ENSG00000123473 STIL 311546 sc-eQTL 3.01e-01 0.0848 0.0818 0.525 DC L1
ENSG00000132122 SPATA6 -846515 sc-eQTL 8.53e-01 0.017 0.0918 0.525 DC L1
ENSG00000159658 EFCAB14 906579 sc-eQTL 7.16e-01 0.0293 0.0805 0.525 DC L1
ENSG00000162366 PDZK1IP1 434649 sc-eQTL 5.44e-01 0.0472 0.0777 0.525 DC L1
ENSG00000162368 CMPK1 291896 sc-eQTL 3.42e-01 -0.0729 0.0766 0.525 DC L1
ENSG00000123472 ATPAF1 951826 sc-eQTL 2.09e-01 0.0886 0.0702 0.53 Mono L1
ENSG00000132122 SPATA6 -846515 sc-eQTL 9.90e-01 0.000792 0.0644 0.53 Mono L1
ENSG00000159658 EFCAB14 906579 sc-eQTL 1.69e-01 -0.0785 0.0568 0.53 Mono L1
ENSG00000162368 CMPK1 291896 sc-eQTL 1.82e-01 0.0852 0.0636 0.53 Mono L1
ENSG00000123472 ATPAF1 951826 sc-eQTL 2.18e-01 0.0847 0.0685 0.53 NK L1
ENSG00000159658 EFCAB14 906579 sc-eQTL 1.51e-01 -0.0803 0.0556 0.53 NK L1
ENSG00000162368 CMPK1 291896 sc-eQTL 8.38e-02 0.0926 0.0533 0.53 NK L1
ENSG00000123472 ATPAF1 951826 sc-eQTL 9.78e-01 -0.0016 0.0569 0.53 Other_T L1
ENSG00000123473 STIL 311546 sc-eQTL 8.54e-01 -0.00847 0.046 0.53 Other_T L1
ENSG00000159658 EFCAB14 906579 sc-eQTL 2.17e-01 0.0692 0.0559 0.53 Other_T L1
ENSG00000162368 CMPK1 291896 sc-eQTL 5.23e-01 0.0466 0.0727 0.53 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123472 ATPAF1 951826 sc-eQTL 6.31e-01 0.0481 0.0998 0.52 B_Activated L2
ENSG00000132122 SPATA6 -846515 sc-eQTL 2.80e-01 -0.088 0.0813 0.52 B_Activated L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 9.05e-01 0.0123 0.103 0.52 B_Activated L2
ENSG00000162368 CMPK1 291896 sc-eQTL 5.19e-01 0.0629 0.0975 0.52 B_Activated L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 6.12e-01 -0.0396 0.0779 0.532 B_Intermediate L2
ENSG00000132122 SPATA6 -846515 sc-eQTL 5.32e-03 -0.245 0.0871 0.532 B_Intermediate L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 7.54e-01 -0.0243 0.0772 0.532 B_Intermediate L2
ENSG00000162368 CMPK1 291896 sc-eQTL 6.88e-01 -0.03 0.0746 0.532 B_Intermediate L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 3.13e-01 -0.0875 0.0865 0.534 B_Memory L2
ENSG00000132122 SPATA6 -846515 sc-eQTL 3.86e-01 0.0709 0.0816 0.534 B_Memory L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 9.11e-01 0.00919 0.0818 0.534 B_Memory L2
ENSG00000162368 CMPK1 291896 sc-eQTL 1.13e-01 -0.127 0.0796 0.534 B_Memory L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 4.35e-01 0.0574 0.0734 0.53 B_Naive1 L2
ENSG00000132122 SPATA6 -846515 sc-eQTL 6.54e-03 -0.24 0.0875 0.53 B_Naive1 L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 6.72e-01 0.0265 0.0624 0.53 B_Naive1 L2
ENSG00000162368 CMPK1 291896 sc-eQTL 1.22e-01 -0.111 0.0712 0.53 B_Naive1 L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 7.11e-01 0.0305 0.0822 0.532 B_Naive2 L2
ENSG00000132122 SPATA6 -846515 sc-eQTL 4.05e-01 -0.0773 0.0926 0.532 B_Naive2 L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 6.10e-01 0.036 0.0705 0.532 B_Naive2 L2
ENSG00000162368 CMPK1 291896 sc-eQTL 4.76e-01 -0.0548 0.0768 0.532 B_Naive2 L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 8.83e-01 0.013 0.0884 0.525 CD4_CTL L2
ENSG00000132122 SPATA6 -846515 sc-eQTL 4.44e-01 -0.0604 0.0788 0.525 CD4_CTL L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 7.79e-01 0.0243 0.0865 0.525 CD4_CTL L2
ENSG00000162368 CMPK1 291896 sc-eQTL 7.43e-01 -0.0293 0.0893 0.525 CD4_CTL L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 3.51e-01 -0.051 0.0546 0.53 CD4_Naive L2
ENSG00000132122 SPATA6 -846515 sc-eQTL 3.04e-01 0.0919 0.0892 0.53 CD4_Naive L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 8.41e-01 -0.00966 0.0481 0.53 CD4_Naive L2
ENSG00000162368 CMPK1 291896 sc-eQTL 9.77e-01 -0.00161 0.0549 0.53 CD4_Naive L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 1.84e-01 0.0925 0.0695 0.53 CD4_TCM L2
ENSG00000132122 SPATA6 -846515 sc-eQTL 1.67e-02 0.21 0.0869 0.53 CD4_TCM L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 6.46e-01 -0.0274 0.0597 0.53 CD4_TCM L2
ENSG00000162368 CMPK1 291896 sc-eQTL 4.72e-01 -0.0439 0.0609 0.53 CD4_TCM L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 5.64e-02 0.133 0.0693 0.53 CD4_TEM L2
ENSG00000132122 SPATA6 -846515 sc-eQTL 8.20e-01 -0.0209 0.0917 0.53 CD4_TEM L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 5.92e-01 -0.0362 0.0674 0.53 CD4_TEM L2
ENSG00000162368 CMPK1 291896 sc-eQTL 5.75e-01 -0.0425 0.0757 0.53 CD4_TEM L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 9.04e-01 0.00864 0.0717 0.53 CD8_CTL L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 9.89e-01 -0.000947 0.0711 0.53 CD8_CTL L2
ENSG00000162368 CMPK1 291896 sc-eQTL 7.02e-01 0.0272 0.0709 0.53 CD8_CTL L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 3.97e-01 -0.055 0.0647 0.53 CD8_Naive L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 6.63e-01 -0.031 0.0712 0.53 CD8_Naive L2
ENSG00000162368 CMPK1 291896 sc-eQTL 7.98e-01 0.0171 0.0667 0.53 CD8_Naive L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 4.07e-01 0.0665 0.08 0.528 CD8_TCM L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 7.56e-01 -0.0253 0.0812 0.528 CD8_TCM L2
ENSG00000162368 CMPK1 291896 sc-eQTL 3.94e-01 -0.065 0.076 0.528 CD8_TCM L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 4.59e-01 0.0661 0.0892 0.53 CD8_TEM L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 3.66e-02 -0.184 0.0876 0.53 CD8_TEM L2
ENSG00000162368 CMPK1 291896 sc-eQTL 1.98e-01 -0.113 0.0879 0.53 CD8_TEM L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 4.47e-01 0.0563 0.074 0.53 MAIT L2
ENSG00000123473 STIL 311546 sc-eQTL 3.30e-01 -0.0715 0.0732 0.53 MAIT L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 2.67e-01 0.08 0.072 0.53 MAIT L2
ENSG00000162368 CMPK1 291896 sc-eQTL 2.80e-01 0.0794 0.0732 0.53 MAIT L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 5.73e-01 0.0468 0.0829 0.529 NK_CD56bright L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 3.52e-02 -0.177 0.0836 0.529 NK_CD56bright L2
ENSG00000162368 CMPK1 291896 sc-eQTL 2.55e-01 0.0965 0.0845 0.529 NK_CD56bright L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 2.45e-01 0.0904 0.0775 0.528 NK_CD56dim L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 3.25e-01 0.0637 0.0646 0.528 NK_CD56dim L2
ENSG00000162368 CMPK1 291896 sc-eQTL 5.15e-01 0.0431 0.0661 0.528 NK_CD56dim L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 6.14e-01 -0.0464 0.0917 0.518 NK_HLA L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 4.79e-02 -0.151 0.076 0.518 NK_HLA L2
ENSG00000162368 CMPK1 291896 sc-eQTL 6.10e-01 0.0434 0.085 0.518 NK_HLA L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 5.08e-01 0.0505 0.0761 0.528 NK_cytokine L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 4.70e-02 -0.143 0.0713 0.528 NK_cytokine L2
ENSG00000162368 CMPK1 291896 sc-eQTL 6.32e-02 0.146 0.078 0.528 NK_cytokine L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 6.41e-01 -0.0355 0.0758 0.556 PB L2
ENSG00000132122 SPATA6 -846515 sc-eQTL 1.53e-01 0.109 0.0757 0.556 PB L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 3.14e-01 0.0993 0.0983 0.556 PB L2
ENSG00000162368 CMPK1 291896 sc-eQTL 4.86e-01 0.071 0.102 0.556 PB L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 5.76e-01 0.0414 0.0739 0.535 Pro_T L2
ENSG00000123473 STIL 311546 sc-eQTL 5.40e-01 0.0352 0.0574 0.535 Pro_T L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 1.42e-01 0.111 0.0755 0.535 Pro_T L2
ENSG00000162368 CMPK1 291896 sc-eQTL 9.62e-01 -0.00397 0.0842 0.535 Pro_T L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 2.24e-01 0.0917 0.0752 0.53 Treg L2
ENSG00000132122 SPATA6 -846515 sc-eQTL 4.00e-01 0.0634 0.0751 0.53 Treg L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 1.37e-01 -0.111 0.0741 0.53 Treg L2
ENSG00000162368 CMPK1 291896 sc-eQTL 7.39e-01 0.0228 0.0683 0.53 Treg L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 9.13e-01 0.01 0.0914 0.527 cDC L2
ENSG00000123473 STIL 311546 sc-eQTL 2.52e-01 0.0907 0.0789 0.527 cDC L2
ENSG00000132122 SPATA6 -846515 sc-eQTL 4.68e-01 -0.068 0.0934 0.527 cDC L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 9.84e-01 0.00185 0.0914 0.527 cDC L2
ENSG00000162366 PDZK1IP1 434649 sc-eQTL 2.18e-01 0.0943 0.0763 0.527 cDC L2
ENSG00000162368 CMPK1 291896 sc-eQTL 9.67e-01 -0.00357 0.0862 0.527 cDC L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 2.08e-01 0.0952 0.0753 0.53 cMono_IL1B L2
ENSG00000132122 SPATA6 -846515 sc-eQTL 7.90e-01 -0.0208 0.0781 0.53 cMono_IL1B L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 3.81e-02 -0.134 0.0643 0.53 cMono_IL1B L2
ENSG00000162368 CMPK1 291896 sc-eQTL 3.13e-01 0.0715 0.0706 0.53 cMono_IL1B L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 4.11e-01 0.0683 0.0828 0.53 cMono_S100A L2
ENSG00000132122 SPATA6 -846515 sc-eQTL 5.45e-01 -0.0509 0.0839 0.53 cMono_S100A L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 5.22e-01 -0.0447 0.0696 0.53 cMono_S100A L2
ENSG00000162368 CMPK1 291896 sc-eQTL 4.65e-01 0.059 0.0806 0.53 cMono_S100A L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 7.08e-01 -0.0357 0.0952 0.518 gdT L2
ENSG00000123473 STIL 311546 sc-eQTL 4.26e-01 -0.0674 0.0843 0.518 gdT L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 9.95e-02 0.152 0.0914 0.518 gdT L2
ENSG00000162368 CMPK1 291896 sc-eQTL 8.69e-01 -0.0162 0.0983 0.518 gdT L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 1.86e-01 0.123 0.0925 0.524 intMono L2
ENSG00000132122 SPATA6 -846515 sc-eQTL 7.45e-01 0.0291 0.0892 0.524 intMono L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 7.10e-01 -0.0285 0.0765 0.524 intMono L2
ENSG00000162368 CMPK1 291896 sc-eQTL 6.00e-01 0.0462 0.088 0.524 intMono L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 1.14e-01 -0.133 0.0839 0.527 ncMono L2
ENSG00000132122 SPATA6 -846515 sc-eQTL 7.61e-01 0.0214 0.0703 0.527 ncMono L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 4.43e-01 0.0642 0.0836 0.527 ncMono L2
ENSG00000162368 CMPK1 291896 sc-eQTL 1.85e-01 0.109 0.0815 0.527 ncMono L2
ENSG00000123472 ATPAF1 951826 sc-eQTL 8.93e-01 -0.0142 0.105 0.528 pDC L2
ENSG00000123473 STIL 311546 sc-eQTL 6.64e-01 0.0375 0.0862 0.528 pDC L2
ENSG00000132122 SPATA6 -846515 sc-eQTL 9.52e-01 0.00587 0.0978 0.528 pDC L2
ENSG00000159658 EFCAB14 906579 sc-eQTL 9.08e-01 0.0103 0.0889 0.528 pDC L2
ENSG00000162366 PDZK1IP1 434649 sc-eQTL 9.41e-01 -0.00591 0.0794 0.528 pDC L2
ENSG00000162368 CMPK1 291896 sc-eQTL 1.72e-02 -0.224 0.093 0.528 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123472 ATPAF1 951826 sc-eQTL 4.39e-01 -0.0548 0.0706 0.53 B_Memory LOneK1K
ENSG00000132122 SPATA6 -846515 sc-eQTL 6.65e-02 -0.164 0.0888 0.53 B_Memory LOneK1K
ENSG00000159658 EFCAB14 906579 sc-eQTL 6.62e-01 -0.0308 0.0704 0.53 B_Memory LOneK1K
ENSG00000162368 CMPK1 291896 sc-eQTL 1.21e-01 -0.111 0.0713 0.53 B_Memory LOneK1K
ENSG00000123472 ATPAF1 951826 sc-eQTL 2.61e-01 0.0833 0.074 0.53 B_Naive LOneK1K
ENSG00000132122 SPATA6 -846515 sc-eQTL 2.40e-02 -0.204 0.0897 0.53 B_Naive LOneK1K
ENSG00000159658 EFCAB14 906579 sc-eQTL 6.21e-01 0.0287 0.058 0.53 B_Naive LOneK1K
ENSG00000162368 CMPK1 291896 sc-eQTL 9.68e-02 -0.117 0.0704 0.53 B_Naive LOneK1K
ENSG00000123472 ATPAF1 951826 sc-eQTL 1.59e-01 0.102 0.072 0.53 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -846515 sc-eQTL 4.98e-01 -0.0507 0.0746 0.53 CD14_Mono LOneK1K
ENSG00000159658 EFCAB14 906579 sc-eQTL 5.85e-02 -0.113 0.0592 0.53 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 291896 sc-eQTL 3.24e-01 0.0638 0.0646 0.53 CD14_Mono LOneK1K
ENSG00000123472 ATPAF1 951826 sc-eQTL 7.96e-01 0.0209 0.0808 0.528 CD16_Mono LOneK1K
ENSG00000132122 SPATA6 -846515 sc-eQTL 3.77e-01 0.0575 0.065 0.528 CD16_Mono LOneK1K
ENSG00000159658 EFCAB14 906579 sc-eQTL 4.85e-01 0.053 0.0758 0.528 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 291896 sc-eQTL 4.02e-01 0.0637 0.0759 0.528 CD16_Mono LOneK1K
ENSG00000123472 ATPAF1 951826 sc-eQTL 1.65e-01 0.0976 0.0701 0.528 NK_CD56dim LOneK1K
ENSG00000159658 EFCAB14 906579 sc-eQTL 2.90e-01 -0.0619 0.0584 0.528 NK_CD56dim LOneK1K
ENSG00000162368 CMPK1 291896 sc-eQTL 9.23e-02 0.0928 0.0549 0.528 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162366 PDZK1IP1 434649 eQTL 0.0419 0.0573 0.0281 0.0 0.0 0.494

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina