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Genes within 1Mb (chr1:47624301:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123472 ATPAF1 950434 sc-eQTL 4.77e-01 -0.0717 0.101 0.077 B L1
ENSG00000132122 SPATA6 -847907 sc-eQTL 6.36e-01 0.0795 0.168 0.077 B L1
ENSG00000159658 EFCAB14 905187 sc-eQTL 8.99e-01 0.0124 0.0977 0.077 B L1
ENSG00000162368 CMPK1 290504 sc-eQTL 4.47e-01 -0.0885 0.116 0.077 B L1
ENSG00000123472 ATPAF1 950434 sc-eQTL 6.06e-01 0.0499 0.0967 0.077 CD4T L1
ENSG00000132122 SPATA6 -847907 sc-eQTL 8.74e-01 -0.0269 0.169 0.077 CD4T L1
ENSG00000159658 EFCAB14 905187 sc-eQTL 3.40e-01 0.0837 0.0875 0.077 CD4T L1
ENSG00000162368 CMPK1 290504 sc-eQTL 4.39e-01 -0.0876 0.113 0.077 CD4T L1
ENSG00000123472 ATPAF1 950434 sc-eQTL 5.82e-01 -0.0711 0.129 0.077 CD8T L1
ENSG00000159658 EFCAB14 905187 sc-eQTL 3.03e-01 -0.107 0.104 0.077 CD8T L1
ENSG00000162368 CMPK1 290504 sc-eQTL 9.50e-02 -0.18 0.107 0.077 CD8T L1
ENSG00000123472 ATPAF1 950434 sc-eQTL 9.89e-02 0.266 0.161 0.079 DC L1
ENSG00000123473 STIL 310154 sc-eQTL 4.39e-01 -0.119 0.154 0.079 DC L1
ENSG00000132122 SPATA6 -847907 sc-eQTL 9.52e-01 -0.0105 0.172 0.079 DC L1
ENSG00000159658 EFCAB14 905187 sc-eQTL 6.64e-01 0.0659 0.151 0.079 DC L1
ENSG00000162366 PDZK1IP1 433257 sc-eQTL 2.47e-01 -0.169 0.146 0.079 DC L1
ENSG00000162368 CMPK1 290504 sc-eQTL 6.91e-01 0.0573 0.144 0.079 DC L1
ENSG00000123472 ATPAF1 950434 sc-eQTL 4.59e-01 -0.101 0.136 0.077 Mono L1
ENSG00000132122 SPATA6 -847907 sc-eQTL 9.79e-01 0.00331 0.125 0.077 Mono L1
ENSG00000159658 EFCAB14 905187 sc-eQTL 7.95e-02 0.193 0.11 0.077 Mono L1
ENSG00000162368 CMPK1 290504 sc-eQTL 8.90e-01 -0.0171 0.124 0.077 Mono L1
ENSG00000123472 ATPAF1 950434 sc-eQTL 7.27e-01 0.0477 0.137 0.077 NK L1
ENSG00000159658 EFCAB14 905187 sc-eQTL 2.79e-01 0.12 0.111 0.077 NK L1
ENSG00000162368 CMPK1 290504 sc-eQTL 9.83e-02 -0.176 0.106 0.077 NK L1
ENSG00000123472 ATPAF1 950434 sc-eQTL 1.38e-01 -0.167 0.112 0.077 Other_T L1
ENSG00000123473 STIL 310154 sc-eQTL 4.03e-01 0.0763 0.0911 0.077 Other_T L1
ENSG00000159658 EFCAB14 905187 sc-eQTL 3.26e-02 -0.237 0.11 0.077 Other_T L1
ENSG00000162368 CMPK1 290504 sc-eQTL 4.63e-02 -0.287 0.143 0.077 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123472 ATPAF1 950434 sc-eQTL 8.97e-01 -0.0258 0.198 0.074 B_Activated L2
ENSG00000132122 SPATA6 -847907 sc-eQTL 9.77e-01 -0.00463 0.162 0.074 B_Activated L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 7.51e-01 0.0652 0.205 0.074 B_Activated L2
ENSG00000162368 CMPK1 290504 sc-eQTL 9.04e-01 0.0235 0.194 0.074 B_Activated L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 2.99e-01 -0.162 0.156 0.073 B_Intermediate L2
ENSG00000132122 SPATA6 -847907 sc-eQTL 3.05e-01 0.182 0.178 0.073 B_Intermediate L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 2.34e-01 -0.184 0.154 0.073 B_Intermediate L2
ENSG00000162368 CMPK1 290504 sc-eQTL 7.09e-02 -0.27 0.149 0.073 B_Intermediate L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 9.99e-01 0.000134 0.175 0.078 B_Memory L2
ENSG00000132122 SPATA6 -847907 sc-eQTL 6.55e-01 -0.0737 0.165 0.078 B_Memory L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 3.15e-01 0.166 0.164 0.078 B_Memory L2
ENSG00000162368 CMPK1 290504 sc-eQTL 5.85e-01 -0.0882 0.161 0.078 B_Memory L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 1.91e-01 -0.192 0.146 0.077 B_Naive1 L2
ENSG00000132122 SPATA6 -847907 sc-eQTL 5.04e-01 0.119 0.178 0.077 B_Naive1 L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 5.39e-01 -0.0768 0.125 0.077 B_Naive1 L2
ENSG00000162368 CMPK1 290504 sc-eQTL 4.38e-01 -0.111 0.143 0.077 B_Naive1 L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 1.61e-01 0.232 0.165 0.077 B_Naive2 L2
ENSG00000132122 SPATA6 -847907 sc-eQTL 9.21e-01 -0.0184 0.187 0.077 B_Naive2 L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 7.71e-01 0.0415 0.142 0.077 B_Naive2 L2
ENSG00000162368 CMPK1 290504 sc-eQTL 4.02e-01 0.13 0.155 0.077 B_Naive2 L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 6.18e-01 -0.0886 0.178 0.07 CD4_CTL L2
ENSG00000132122 SPATA6 -847907 sc-eQTL 9.13e-01 0.0174 0.159 0.07 CD4_CTL L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 3.67e-01 0.157 0.174 0.07 CD4_CTL L2
ENSG00000162368 CMPK1 290504 sc-eQTL 1.98e-01 -0.231 0.179 0.07 CD4_CTL L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 7.20e-01 0.0386 0.107 0.077 CD4_Naive L2
ENSG00000132122 SPATA6 -847907 sc-eQTL 6.26e-01 -0.0857 0.176 0.077 CD4_Naive L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 5.27e-01 0.0599 0.0945 0.077 CD4_Naive L2
ENSG00000162368 CMPK1 290504 sc-eQTL 2.70e-01 -0.119 0.108 0.077 CD4_Naive L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 8.70e-01 -0.0224 0.137 0.077 CD4_TCM L2
ENSG00000132122 SPATA6 -847907 sc-eQTL 8.74e-01 0.0274 0.173 0.077 CD4_TCM L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 5.31e-01 0.0733 0.117 0.077 CD4_TCM L2
ENSG00000162368 CMPK1 290504 sc-eQTL 1.41e-01 -0.176 0.119 0.077 CD4_TCM L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 3.74e-01 -0.124 0.139 0.077 CD4_TEM L2
ENSG00000132122 SPATA6 -847907 sc-eQTL 7.27e-01 0.064 0.183 0.077 CD4_TEM L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 1.66e-01 0.186 0.134 0.077 CD4_TEM L2
ENSG00000162368 CMPK1 290504 sc-eQTL 5.67e-01 -0.0866 0.151 0.077 CD4_TEM L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 4.67e-01 -0.102 0.14 0.077 CD8_CTL L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 9.32e-01 0.0119 0.139 0.077 CD8_CTL L2
ENSG00000162368 CMPK1 290504 sc-eQTL 3.80e-02 -0.286 0.137 0.077 CD8_CTL L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 6.48e-01 0.0591 0.129 0.077 CD8_Naive L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 2.90e-01 -0.15 0.142 0.077 CD8_Naive L2
ENSG00000162368 CMPK1 290504 sc-eQTL 1.34e-01 -0.199 0.132 0.077 CD8_Naive L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 3.03e-01 0.166 0.161 0.076 CD8_TCM L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 3.60e-01 0.15 0.163 0.076 CD8_TCM L2
ENSG00000162368 CMPK1 290504 sc-eQTL 3.20e-01 -0.152 0.153 0.076 CD8_TCM L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 7.94e-01 0.047 0.18 0.068 CD8_TEM L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 6.71e-01 0.0759 0.179 0.068 CD8_TEM L2
ENSG00000162368 CMPK1 290504 sc-eQTL 9.99e-01 -0.000125 0.178 0.068 CD8_TEM L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 6.70e-02 -0.282 0.153 0.076 MAIT L2
ENSG00000123473 STIL 310154 sc-eQTL 4.08e-01 0.126 0.153 0.076 MAIT L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 8.01e-01 -0.0379 0.15 0.076 MAIT L2
ENSG00000162368 CMPK1 290504 sc-eQTL 4.17e-02 -0.31 0.151 0.076 MAIT L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 1.91e-01 0.213 0.162 0.078 NK_CD56bright L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 2.82e-01 0.178 0.165 0.078 NK_CD56bright L2
ENSG00000162368 CMPK1 290504 sc-eQTL 9.17e-02 -0.28 0.165 0.078 NK_CD56bright L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 6.06e-01 -0.0783 0.152 0.078 NK_CD56dim L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 8.68e-01 0.021 0.126 0.078 NK_CD56dim L2
ENSG00000162368 CMPK1 290504 sc-eQTL 3.45e-02 -0.272 0.128 0.078 NK_CD56dim L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 5.74e-01 0.101 0.179 0.08 NK_HLA L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 6.78e-01 -0.0624 0.15 0.08 NK_HLA L2
ENSG00000162368 CMPK1 290504 sc-eQTL 3.09e-01 0.169 0.166 0.08 NK_HLA L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 9.43e-01 0.0109 0.151 0.078 NK_cytokine L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 2.18e-01 0.176 0.142 0.078 NK_cytokine L2
ENSG00000162368 CMPK1 290504 sc-eQTL 2.67e-01 -0.173 0.156 0.078 NK_cytokine L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 9.11e-01 0.0168 0.151 0.074 PB L2
ENSG00000132122 SPATA6 -847907 sc-eQTL 5.98e-01 -0.0801 0.151 0.074 PB L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 3.09e-01 -0.199 0.195 0.074 PB L2
ENSG00000162368 CMPK1 290504 sc-eQTL 7.69e-01 -0.0595 0.202 0.074 PB L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 4.43e-01 0.111 0.144 0.076 Pro_T L2
ENSG00000123473 STIL 310154 sc-eQTL 4.99e-02 -0.218 0.111 0.076 Pro_T L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 5.52e-02 -0.282 0.146 0.076 Pro_T L2
ENSG00000162368 CMPK1 290504 sc-eQTL 1.35e-01 -0.244 0.163 0.076 Pro_T L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 8.13e-01 -0.0346 0.146 0.077 Treg L2
ENSG00000132122 SPATA6 -847907 sc-eQTL 9.53e-01 0.00856 0.146 0.077 Treg L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 4.75e-01 0.103 0.144 0.077 Treg L2
ENSG00000162368 CMPK1 290504 sc-eQTL 8.99e-01 -0.0168 0.133 0.077 Treg L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 2.38e-01 0.221 0.187 0.073 cDC L2
ENSG00000123473 STIL 310154 sc-eQTL 6.34e-01 0.0776 0.162 0.073 cDC L2
ENSG00000132122 SPATA6 -847907 sc-eQTL 1.91e-01 -0.25 0.191 0.073 cDC L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 1.84e-01 0.249 0.187 0.073 cDC L2
ENSG00000162366 PDZK1IP1 433257 sc-eQTL 8.81e-01 -0.0236 0.157 0.073 cDC L2
ENSG00000162368 CMPK1 290504 sc-eQTL 1.78e-01 -0.238 0.176 0.073 cDC L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 4.75e-01 -0.104 0.145 0.077 cMono_IL1B L2
ENSG00000132122 SPATA6 -847907 sc-eQTL 3.11e-01 -0.152 0.15 0.077 cMono_IL1B L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 5.89e-01 0.0676 0.125 0.077 cMono_IL1B L2
ENSG00000162368 CMPK1 290504 sc-eQTL 9.79e-01 0.00366 0.136 0.077 cMono_IL1B L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 5.86e-01 -0.0877 0.161 0.077 cMono_S100A L2
ENSG00000132122 SPATA6 -847907 sc-eQTL 8.12e-01 0.0388 0.163 0.077 cMono_S100A L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 6.24e-02 0.251 0.134 0.077 cMono_S100A L2
ENSG00000162368 CMPK1 290504 sc-eQTL 9.58e-01 -0.00833 0.156 0.077 cMono_S100A L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 4.48e-01 -0.153 0.201 0.067 gdT L2
ENSG00000123473 STIL 310154 sc-eQTL 6.95e-02 0.324 0.177 0.067 gdT L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 1.10e-02 -0.492 0.191 0.067 gdT L2
ENSG00000162368 CMPK1 290504 sc-eQTL 1.62e-01 -0.291 0.207 0.067 gdT L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 6.75e-01 -0.0754 0.179 0.078 intMono L2
ENSG00000132122 SPATA6 -847907 sc-eQTL 7.01e-01 -0.0663 0.172 0.078 intMono L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 9.86e-02 0.243 0.147 0.078 intMono L2
ENSG00000162368 CMPK1 290504 sc-eQTL 7.19e-01 -0.0612 0.17 0.078 intMono L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 6.74e-01 0.0698 0.166 0.081 ncMono L2
ENSG00000132122 SPATA6 -847907 sc-eQTL 8.37e-01 -0.0284 0.138 0.081 ncMono L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 8.69e-01 -0.0272 0.164 0.081 ncMono L2
ENSG00000162368 CMPK1 290504 sc-eQTL 5.64e-01 -0.0928 0.161 0.081 ncMono L2
ENSG00000123472 ATPAF1 950434 sc-eQTL 4.63e-01 0.154 0.21 0.068 pDC L2
ENSG00000123473 STIL 310154 sc-eQTL 5.89e-01 -0.0933 0.172 0.068 pDC L2
ENSG00000132122 SPATA6 -847907 sc-eQTL 4.98e-01 0.132 0.195 0.068 pDC L2
ENSG00000159658 EFCAB14 905187 sc-eQTL 5.24e-01 -0.113 0.178 0.068 pDC L2
ENSG00000162366 PDZK1IP1 433257 sc-eQTL 1.87e-01 -0.209 0.158 0.068 pDC L2
ENSG00000162368 CMPK1 290504 sc-eQTL 2.06e-01 0.239 0.188 0.068 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123472 ATPAF1 950434 sc-eQTL 5.84e-01 -0.0773 0.141 0.077 B_Memory LOneK1K
ENSG00000132122 SPATA6 -847907 sc-eQTL 1.75e-01 0.242 0.178 0.077 B_Memory LOneK1K
ENSG00000159658 EFCAB14 905187 sc-eQTL 3.93e-01 -0.12 0.14 0.077 B_Memory LOneK1K
ENSG00000162368 CMPK1 290504 sc-eQTL 1.22e-01 -0.221 0.142 0.077 B_Memory LOneK1K
ENSG00000123472 ATPAF1 950434 sc-eQTL 4.81e-01 -0.104 0.148 0.077 B_Naive LOneK1K
ENSG00000132122 SPATA6 -847907 sc-eQTL 4.71e-01 0.131 0.181 0.077 B_Naive LOneK1K
ENSG00000159658 EFCAB14 905187 sc-eQTL 6.89e-01 -0.0463 0.116 0.077 B_Naive LOneK1K
ENSG00000162368 CMPK1 290504 sc-eQTL 9.60e-01 -0.00703 0.142 0.077 B_Naive LOneK1K
ENSG00000123472 ATPAF1 950434 sc-eQTL 4.25e-01 -0.112 0.14 0.077 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -847907 sc-eQTL 7.15e-01 -0.0528 0.145 0.077 CD14_Mono LOneK1K
ENSG00000159658 EFCAB14 905187 sc-eQTL 1.87e-01 0.152 0.115 0.077 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 290504 sc-eQTL 8.43e-01 0.0249 0.125 0.077 CD14_Mono LOneK1K
ENSG00000123472 ATPAF1 950434 sc-eQTL 8.11e-01 -0.0372 0.155 0.078 CD16_Mono LOneK1K
ENSG00000132122 SPATA6 -847907 sc-eQTL 3.80e-01 -0.11 0.125 0.078 CD16_Mono LOneK1K
ENSG00000159658 EFCAB14 905187 sc-eQTL 2.56e-01 0.166 0.145 0.078 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 290504 sc-eQTL 1.59e-01 -0.205 0.145 0.078 CD16_Mono LOneK1K
ENSG00000123472 ATPAF1 950434 sc-eQTL 7.82e-01 -0.0387 0.14 0.078 NK_CD56dim LOneK1K
ENSG00000159658 EFCAB14 905187 sc-eQTL 2.36e-01 0.138 0.116 0.078 NK_CD56dim LOneK1K
ENSG00000162368 CMPK1 290504 sc-eQTL 1.69e-01 -0.151 0.109 0.078 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162368 CMPK1 290504 eQTL 0.0116 -0.0442 0.0175 0.0 0.0 0.0913
ENSG00000224805 LINC00853 445051 eQTL 0.0193 -0.0801 0.0342 0.0 0.0 0.0913

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000224805 LINC00853 445051 7.87e-07 4.93e-07 1.14e-07 3.48e-07 9.33e-08 2.08e-07 5.2e-07 1.48e-07 4.19e-07 2.39e-07 5.58e-07 3.65e-07 6.98e-07 1.1e-07 2.15e-07 2.1e-07 3.24e-07 3.73e-07 1.97e-07 1.43e-07 2.05e-07 3.71e-07 3.19e-07 1.63e-07 6.39e-07 2.49e-07 2.62e-07 2.44e-07 3.58e-07 5.28e-07 2.55e-07 6.49e-08 4.55e-08 1.42e-07 3.04e-07 7.68e-08 1.08e-07 1.06e-07 6.38e-08 3.05e-08 8.48e-08 4.02e-07 4.18e-08 1.52e-08 1.25e-07 1.25e-08 1.21e-07 1.79e-08 5.86e-08