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Genes within 1Mb (chr1:47622292:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123472 ATPAF1 948425 sc-eQTL 6.30e-01 -0.0278 0.0575 0.733 B L1
ENSG00000132122 SPATA6 -849916 sc-eQTL 7.63e-04 -0.319 0.0933 0.733 B L1
ENSG00000159658 EFCAB14 903178 sc-eQTL 2.66e-01 0.062 0.0556 0.733 B L1
ENSG00000162368 CMPK1 288495 sc-eQTL 8.80e-02 -0.113 0.066 0.733 B L1
ENSG00000123472 ATPAF1 948425 sc-eQTL 8.80e-01 0.00829 0.0547 0.733 CD4T L1
ENSG00000132122 SPATA6 -849916 sc-eQTL 5.36e-01 0.0592 0.0956 0.733 CD4T L1
ENSG00000159658 EFCAB14 903178 sc-eQTL 3.96e-01 0.0421 0.0494 0.733 CD4T L1
ENSG00000162368 CMPK1 288495 sc-eQTL 8.65e-01 0.0108 0.0639 0.733 CD4T L1
ENSG00000123472 ATPAF1 948425 sc-eQTL 8.96e-01 -0.00916 0.0698 0.733 CD8T L1
ENSG00000159658 EFCAB14 903178 sc-eQTL 6.39e-01 0.0264 0.0562 0.733 CD8T L1
ENSG00000162368 CMPK1 288495 sc-eQTL 5.08e-01 -0.0387 0.0583 0.733 CD8T L1
ENSG00000123472 ATPAF1 948425 sc-eQTL 1.11e-01 0.15 0.094 0.73 DC L1
ENSG00000123473 STIL 308145 sc-eQTL 5.98e-01 -0.0475 0.09 0.73 DC L1
ENSG00000132122 SPATA6 -849916 sc-eQTL 7.12e-01 0.0373 0.101 0.73 DC L1
ENSG00000159658 EFCAB14 903178 sc-eQTL 1.95e-01 0.115 0.0881 0.73 DC L1
ENSG00000162366 PDZK1IP1 431248 sc-eQTL 7.29e-01 -0.0297 0.0854 0.73 DC L1
ENSG00000162368 CMPK1 288495 sc-eQTL 4.84e-01 -0.059 0.0842 0.73 DC L1
ENSG00000123472 ATPAF1 948425 sc-eQTL 2.78e-01 0.0843 0.0776 0.733 Mono L1
ENSG00000132122 SPATA6 -849916 sc-eQTL 5.42e-01 -0.0433 0.0709 0.733 Mono L1
ENSG00000159658 EFCAB14 903178 sc-eQTL 5.48e-01 -0.0378 0.0629 0.733 Mono L1
ENSG00000162368 CMPK1 288495 sc-eQTL 3.24e-02 0.15 0.0697 0.733 Mono L1
ENSG00000123472 ATPAF1 948425 sc-eQTL 5.37e-01 0.0469 0.0758 0.732 NK L1
ENSG00000159658 EFCAB14 903178 sc-eQTL 6.75e-01 -0.0259 0.0616 0.732 NK L1
ENSG00000162368 CMPK1 288495 sc-eQTL 5.01e-01 0.0399 0.0592 0.732 NK L1
ENSG00000123472 ATPAF1 948425 sc-eQTL 6.17e-01 -0.0315 0.0629 0.733 Other_T L1
ENSG00000123473 STIL 308145 sc-eQTL 1.97e-01 -0.0656 0.0507 0.733 Other_T L1
ENSG00000159658 EFCAB14 903178 sc-eQTL 8.14e-01 -0.0147 0.0622 0.733 Other_T L1
ENSG00000162368 CMPK1 288495 sc-eQTL 4.16e-01 0.0657 0.0805 0.733 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123472 ATPAF1 948425 sc-eQTL 3.09e-01 0.114 0.111 0.722 B_Activated L2
ENSG00000132122 SPATA6 -849916 sc-eQTL 1.34e-01 -0.137 0.0907 0.722 B_Activated L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 8.00e-01 -0.0293 0.115 0.722 B_Activated L2
ENSG00000162368 CMPK1 288495 sc-eQTL 2.56e-01 0.124 0.109 0.722 B_Activated L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 1.95e-01 -0.11 0.0846 0.732 B_Intermediate L2
ENSG00000132122 SPATA6 -849916 sc-eQTL 6.87e-02 -0.176 0.0959 0.732 B_Intermediate L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 8.91e-01 0.0115 0.0841 0.732 B_Intermediate L2
ENSG00000162368 CMPK1 288495 sc-eQTL 3.58e-01 -0.0749 0.0812 0.732 B_Intermediate L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 4.45e-01 -0.0724 0.0947 0.737 B_Memory L2
ENSG00000132122 SPATA6 -849916 sc-eQTL 7.02e-02 0.161 0.0887 0.737 B_Memory L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 8.79e-02 0.152 0.0888 0.737 B_Memory L2
ENSG00000162368 CMPK1 288495 sc-eQTL 3.25e-01 -0.0863 0.0874 0.737 B_Memory L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 9.52e-01 -0.00497 0.0816 0.733 B_Naive1 L2
ENSG00000132122 SPATA6 -849916 sc-eQTL 4.00e-03 -0.282 0.0969 0.733 B_Naive1 L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 2.75e-01 0.0756 0.0691 0.733 B_Naive1 L2
ENSG00000162368 CMPK1 288495 sc-eQTL 2.53e-01 -0.0909 0.0793 0.733 B_Naive1 L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 4.16e-01 0.0732 0.0897 0.736 B_Naive2 L2
ENSG00000132122 SPATA6 -849916 sc-eQTL 2.85e-01 -0.108 0.101 0.736 B_Naive2 L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 1.96e-01 0.0996 0.0768 0.736 B_Naive2 L2
ENSG00000162368 CMPK1 288495 sc-eQTL 8.14e-01 0.0198 0.084 0.736 B_Naive2 L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 8.85e-01 -0.0137 0.095 0.727 CD4_CTL L2
ENSG00000132122 SPATA6 -849916 sc-eQTL 6.42e-01 -0.0395 0.0848 0.727 CD4_CTL L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 2.18e-01 0.114 0.0927 0.727 CD4_CTL L2
ENSG00000162368 CMPK1 288495 sc-eQTL 6.62e-01 -0.042 0.0959 0.727 CD4_CTL L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 3.95e-01 -0.0514 0.0604 0.733 CD4_Naive L2
ENSG00000132122 SPATA6 -849916 sc-eQTL 4.38e-01 0.0766 0.0987 0.733 CD4_Naive L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 2.52e-01 0.0609 0.0531 0.733 CD4_Naive L2
ENSG00000162368 CMPK1 288495 sc-eQTL 8.38e-01 0.0124 0.0607 0.733 CD4_Naive L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 2.02e-01 0.0983 0.0768 0.733 CD4_TCM L2
ENSG00000132122 SPATA6 -849916 sc-eQTL 4.14e-01 0.0795 0.0972 0.733 CD4_TCM L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 6.00e-01 0.0346 0.0659 0.733 CD4_TCM L2
ENSG00000162368 CMPK1 288495 sc-eQTL 5.75e-01 -0.0378 0.0674 0.733 CD4_TCM L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 2.43e-01 0.0925 0.079 0.733 CD4_TEM L2
ENSG00000132122 SPATA6 -849916 sc-eQTL 9.61e-01 -0.00504 0.104 0.733 CD4_TEM L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 1.56e-01 0.108 0.0761 0.733 CD4_TEM L2
ENSG00000162368 CMPK1 288495 sc-eQTL 4.67e-01 -0.0626 0.0859 0.733 CD4_TEM L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 4.68e-01 -0.0564 0.0776 0.733 CD8_CTL L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 4.17e-01 0.0625 0.0768 0.733 CD8_CTL L2
ENSG00000162368 CMPK1 288495 sc-eQTL 7.99e-01 -0.0196 0.0768 0.733 CD8_CTL L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 9.80e-01 0.00187 0.0734 0.733 CD8_Naive L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 3.83e-01 -0.0703 0.0805 0.733 CD8_Naive L2
ENSG00000162368 CMPK1 288495 sc-eQTL 5.16e-01 -0.0491 0.0754 0.733 CD8_Naive L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 7.08e-01 0.0338 0.0901 0.738 CD8_TCM L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 6.24e-01 0.0449 0.0913 0.738 CD8_TCM L2
ENSG00000162368 CMPK1 288495 sc-eQTL 8.02e-01 -0.0215 0.0857 0.738 CD8_TCM L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 7.79e-01 -0.0275 0.0978 0.728 CD8_TEM L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 6.92e-01 -0.0385 0.097 0.728 CD8_TEM L2
ENSG00000162368 CMPK1 288495 sc-eQTL 8.35e-01 -0.0202 0.0967 0.728 CD8_TEM L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 4.31e-01 -0.0649 0.0822 0.732 MAIT L2
ENSG00000123473 STIL 308145 sc-eQTL 1.07e-01 -0.131 0.0811 0.732 MAIT L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 6.60e-01 0.0353 0.0802 0.732 MAIT L2
ENSG00000162368 CMPK1 288495 sc-eQTL 4.12e-01 0.067 0.0815 0.732 MAIT L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 1.00e-01 0.151 0.0915 0.731 NK_CD56bright L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 3.49e-01 -0.0879 0.0936 0.731 NK_CD56bright L2
ENSG00000162368 CMPK1 288495 sc-eQTL 9.81e-01 -0.00229 0.0941 0.731 NK_CD56bright L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 5.39e-01 0.0525 0.0853 0.731 NK_CD56dim L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 6.60e-01 0.0313 0.0711 0.731 NK_CD56dim L2
ENSG00000162368 CMPK1 288495 sc-eQTL 5.45e-01 -0.0439 0.0725 0.731 NK_CD56dim L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 8.58e-01 -0.0179 0.0997 0.719 NK_HLA L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 1.33e-01 -0.125 0.0829 0.719 NK_HLA L2
ENSG00000162368 CMPK1 288495 sc-eQTL 4.32e-01 0.0727 0.0923 0.719 NK_HLA L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 5.36e-01 -0.0527 0.0851 0.731 NK_cytokine L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 9.49e-01 0.00512 0.0805 0.731 NK_cytokine L2
ENSG00000162368 CMPK1 288495 sc-eQTL 5.21e-01 0.0565 0.0878 0.731 NK_cytokine L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 5.04e-01 0.0628 0.0937 0.756 PB L2
ENSG00000132122 SPATA6 -849916 sc-eQTL 7.71e-01 -0.0276 0.0945 0.756 PB L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 9.63e-01 -0.00567 0.122 0.756 PB L2
ENSG00000162368 CMPK1 288495 sc-eQTL 2.75e-01 0.137 0.125 0.756 PB L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 8.14e-02 0.144 0.0822 0.739 Pro_T L2
ENSG00000123473 STIL 308145 sc-eQTL 6.15e-01 -0.0324 0.0642 0.739 Pro_T L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 4.50e-01 0.0643 0.0849 0.739 Pro_T L2
ENSG00000162368 CMPK1 288495 sc-eQTL 9.42e-01 -0.00683 0.0943 0.739 Pro_T L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 6.05e-01 0.0438 0.0846 0.733 Treg L2
ENSG00000132122 SPATA6 -849916 sc-eQTL 3.74e-01 0.075 0.0842 0.733 Treg L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 5.98e-01 -0.0441 0.0835 0.733 Treg L2
ENSG00000162368 CMPK1 288495 sc-eQTL 3.65e-02 0.16 0.0759 0.733 Treg L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 3.46e-01 0.0936 0.099 0.722 cDC L2
ENSG00000123473 STIL 308145 sc-eQTL 6.71e-01 0.0365 0.086 0.722 cDC L2
ENSG00000132122 SPATA6 -849916 sc-eQTL 3.22e-01 -0.101 0.101 0.722 cDC L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 3.75e-02 0.205 0.098 0.722 cDC L2
ENSG00000162366 PDZK1IP1 431248 sc-eQTL 7.02e-01 0.0318 0.0831 0.722 cDC L2
ENSG00000162368 CMPK1 288495 sc-eQTL 5.88e-01 -0.0508 0.0936 0.722 cDC L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 2.40e-01 0.0985 0.0836 0.733 cMono_IL1B L2
ENSG00000132122 SPATA6 -849916 sc-eQTL 4.17e-01 -0.0703 0.0864 0.733 cMono_IL1B L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 2.79e-01 -0.078 0.0718 0.733 cMono_IL1B L2
ENSG00000162368 CMPK1 288495 sc-eQTL 4.06e-01 0.0653 0.0784 0.733 cMono_IL1B L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 7.48e-01 0.0295 0.0917 0.733 cMono_S100A L2
ENSG00000132122 SPATA6 -849916 sc-eQTL 2.47e-01 -0.107 0.0926 0.733 cMono_S100A L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 7.23e-01 0.0274 0.0771 0.733 cMono_S100A L2
ENSG00000162368 CMPK1 288495 sc-eQTL 4.96e-02 0.175 0.0884 0.733 cMono_S100A L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 7.20e-01 -0.0363 0.101 0.709 gdT L2
ENSG00000123473 STIL 308145 sc-eQTL 9.41e-01 0.00667 0.0898 0.709 gdT L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 9.90e-01 -0.00124 0.0981 0.709 gdT L2
ENSG00000162368 CMPK1 288495 sc-eQTL 3.48e-01 -0.098 0.104 0.709 gdT L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 5.23e-01 0.0665 0.104 0.731 intMono L2
ENSG00000132122 SPATA6 -849916 sc-eQTL 1.44e-01 -0.146 0.0994 0.731 intMono L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 4.65e-01 -0.0627 0.0856 0.731 intMono L2
ENSG00000162368 CMPK1 288495 sc-eQTL 2.33e-01 0.118 0.0983 0.731 intMono L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 4.46e-01 -0.0722 0.0945 0.733 ncMono L2
ENSG00000132122 SPATA6 -849916 sc-eQTL 4.96e-01 0.0537 0.0786 0.733 ncMono L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 7.30e-01 0.0324 0.0937 0.733 ncMono L2
ENSG00000162368 CMPK1 288495 sc-eQTL 1.24e-01 0.141 0.0912 0.733 ncMono L2
ENSG00000123472 ATPAF1 948425 sc-eQTL 9.69e-01 0.00432 0.112 0.723 pDC L2
ENSG00000123473 STIL 308145 sc-eQTL 4.80e-01 -0.0648 0.0915 0.723 pDC L2
ENSG00000132122 SPATA6 -849916 sc-eQTL 7.91e-01 0.0276 0.104 0.723 pDC L2
ENSG00000159658 EFCAB14 903178 sc-eQTL 7.26e-01 -0.0332 0.0944 0.723 pDC L2
ENSG00000162366 PDZK1IP1 431248 sc-eQTL 3.21e-01 -0.0836 0.0841 0.723 pDC L2
ENSG00000162368 CMPK1 288495 sc-eQTL 1.98e-01 -0.129 0.1 0.723 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123472 ATPAF1 948425 sc-eQTL 3.09e-01 -0.0782 0.0767 0.733 B_Memory LOneK1K
ENSG00000132122 SPATA6 -849916 sc-eQTL 3.10e-01 -0.0988 0.0971 0.733 B_Memory LOneK1K
ENSG00000159658 EFCAB14 903178 sc-eQTL 8.27e-01 0.0168 0.0765 0.733 B_Memory LOneK1K
ENSG00000162368 CMPK1 288495 sc-eQTL 1.30e-01 -0.118 0.0775 0.733 B_Memory LOneK1K
ENSG00000123472 ATPAF1 948425 sc-eQTL 5.34e-01 0.0512 0.0821 0.733 B_Naive LOneK1K
ENSG00000132122 SPATA6 -849916 sc-eQTL 1.29e-02 -0.249 0.0991 0.733 B_Naive LOneK1K
ENSG00000159658 EFCAB14 903178 sc-eQTL 1.10e-01 0.103 0.0639 0.733 B_Naive LOneK1K
ENSG00000162368 CMPK1 288495 sc-eQTL 3.34e-01 -0.076 0.0784 0.733 B_Naive LOneK1K
ENSG00000123472 ATPAF1 948425 sc-eQTL 2.55e-01 0.0909 0.0797 0.733 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -849916 sc-eQTL 2.62e-01 -0.0926 0.0823 0.733 CD14_Mono LOneK1K
ENSG00000159658 EFCAB14 903178 sc-eQTL 3.72e-01 -0.0588 0.0658 0.733 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 288495 sc-eQTL 6.97e-02 0.129 0.0709 0.733 CD14_Mono LOneK1K
ENSG00000123472 ATPAF1 948425 sc-eQTL 6.00e-01 0.0469 0.0892 0.731 CD16_Mono LOneK1K
ENSG00000132122 SPATA6 -849916 sc-eQTL 9.06e-01 -0.00853 0.0719 0.731 CD16_Mono LOneK1K
ENSG00000159658 EFCAB14 903178 sc-eQTL 9.29e-01 0.00743 0.0839 0.731 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 288495 sc-eQTL 2.09e-01 0.105 0.0837 0.731 CD16_Mono LOneK1K
ENSG00000123472 ATPAF1 948425 sc-eQTL 6.62e-01 0.0339 0.0775 0.731 NK_CD56dim LOneK1K
ENSG00000159658 EFCAB14 903178 sc-eQTL 9.29e-01 0.00575 0.0645 0.731 NK_CD56dim LOneK1K
ENSG00000162368 CMPK1 288495 sc-eQTL 5.43e-01 0.0371 0.0608 0.731 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000237424 FOXD2-AS1 187651 eQTL 0.00033 -0.103 0.0286 0.00446 0.0 0.233

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000237424 FOXD2-AS1 187651 3.55e-06 9.3e-06 5.62e-07 3.51e-06 6.39e-07 7.41e-07 4.23e-06 1.81e-06 9.51e-06 3.17e-06 1.82e-05 5.44e-06 1.11e-05 3.95e-06 1.23e-06 3.81e-06 2.09e-06 3.61e-06 6.7e-07 1.21e-06 1.99e-06 6.08e-06 3.51e-06 9.95e-07 9.03e-06 1.2e-06 2.55e-06 2.73e-06 4.26e-06 4.13e-06 9.19e-06 2.31e-07 4.73e-07 1.36e-06 2.05e-06 9.27e-07 7.71e-07 2.47e-07 1.12e-06 2.04e-07 2.89e-07 7.37e-06 5.89e-07 5.58e-09 3.56e-07 6.74e-07 3.2e-07 2.23e-07 1.68e-07