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Genes within 1Mb (chr1:47617056:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123472 ATPAF1 943189 sc-eQTL 8.77e-01 0.00865 0.0557 0.722 B L1
ENSG00000132122 SPATA6 -855152 sc-eQTL 3.89e-01 -0.0798 0.0926 0.722 B L1
ENSG00000159658 EFCAB14 897942 sc-eQTL 3.87e-01 -0.0467 0.0539 0.722 B L1
ENSG00000162368 CMPK1 283259 sc-eQTL 3.23e-01 -0.0635 0.0641 0.722 B L1
ENSG00000123472 ATPAF1 943189 sc-eQTL 5.96e-01 0.029 0.0545 0.722 CD4T L1
ENSG00000132122 SPATA6 -855152 sc-eQTL 1.79e-01 0.128 0.0951 0.722 CD4T L1
ENSG00000159658 EFCAB14 897942 sc-eQTL 3.55e-01 -0.0457 0.0493 0.722 CD4T L1
ENSG00000162368 CMPK1 283259 sc-eQTL 5.43e-01 0.0388 0.0637 0.722 CD4T L1
ENSG00000123472 ATPAF1 943189 sc-eQTL 4.51e-01 -0.0521 0.069 0.722 CD8T L1
ENSG00000159658 EFCAB14 897942 sc-eQTL 9.19e-01 -0.00567 0.0557 0.722 CD8T L1
ENSG00000162368 CMPK1 283259 sc-eQTL 2.62e-01 0.0648 0.0576 0.722 CD8T L1
ENSG00000123472 ATPAF1 943189 sc-eQTL 4.09e-01 -0.0742 0.0898 0.716 DC L1
ENSG00000123473 STIL 302909 sc-eQTL 4.02e-01 0.0717 0.0854 0.716 DC L1
ENSG00000132122 SPATA6 -855152 sc-eQTL 3.01e-01 -0.0992 0.0956 0.716 DC L1
ENSG00000159658 EFCAB14 897942 sc-eQTL 1.64e-01 0.117 0.0837 0.716 DC L1
ENSG00000162366 PDZK1IP1 426012 sc-eQTL 4.89e-01 0.0563 0.0811 0.716 DC L1
ENSG00000162368 CMPK1 283259 sc-eQTL 9.20e-01 0.00807 0.0801 0.716 DC L1
ENSG00000123472 ATPAF1 943189 sc-eQTL 7.10e-01 0.0282 0.0756 0.722 Mono L1
ENSG00000132122 SPATA6 -855152 sc-eQTL 6.08e-01 0.0354 0.069 0.722 Mono L1
ENSG00000159658 EFCAB14 897942 sc-eQTL 7.49e-01 -0.0196 0.0612 0.722 Mono L1
ENSG00000162368 CMPK1 283259 sc-eQTL 4.54e-01 0.0514 0.0684 0.722 Mono L1
ENSG00000123472 ATPAF1 943189 sc-eQTL 7.40e-01 0.0244 0.0733 0.723 NK L1
ENSG00000159658 EFCAB14 897942 sc-eQTL 3.26e-01 -0.0585 0.0595 0.723 NK L1
ENSG00000162368 CMPK1 283259 sc-eQTL 1.18e-01 0.0893 0.0569 0.723 NK L1
ENSG00000123472 ATPAF1 943189 sc-eQTL 9.35e-01 0.00499 0.0611 0.722 Other_T L1
ENSG00000123473 STIL 302909 sc-eQTL 3.68e-01 0.0445 0.0494 0.722 Other_T L1
ENSG00000159658 EFCAB14 897942 sc-eQTL 1.75e-01 0.0817 0.0601 0.722 Other_T L1
ENSG00000162368 CMPK1 283259 sc-eQTL 7.40e-01 -0.0261 0.0782 0.722 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123472 ATPAF1 943189 sc-eQTL 4.38e-01 -0.0855 0.11 0.724 B_Activated L2
ENSG00000132122 SPATA6 -855152 sc-eQTL 7.65e-01 -0.0269 0.0898 0.724 B_Activated L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 7.64e-01 -0.0341 0.114 0.724 B_Activated L2
ENSG00000162368 CMPK1 283259 sc-eQTL 8.24e-01 0.0239 0.108 0.724 B_Activated L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 6.85e-01 0.0338 0.0832 0.725 B_Intermediate L2
ENSG00000132122 SPATA6 -855152 sc-eQTL 1.85e-02 -0.222 0.0935 0.725 B_Intermediate L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 5.92e-01 -0.0442 0.0823 0.725 B_Intermediate L2
ENSG00000162368 CMPK1 283259 sc-eQTL 7.54e-01 0.025 0.0797 0.725 B_Intermediate L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 5.47e-01 -0.0554 0.0919 0.724 B_Memory L2
ENSG00000132122 SPATA6 -855152 sc-eQTL 8.35e-01 0.0181 0.0867 0.724 B_Memory L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 1.84e-01 -0.115 0.0864 0.724 B_Memory L2
ENSG00000162368 CMPK1 283259 sc-eQTL 6.19e-01 -0.0424 0.0849 0.724 B_Memory L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 7.41e-01 0.0265 0.0799 0.722 B_Naive1 L2
ENSG00000132122 SPATA6 -855152 sc-eQTL 1.42e-01 -0.142 0.0963 0.722 B_Naive1 L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 5.60e-01 0.0396 0.0679 0.722 B_Naive1 L2
ENSG00000162368 CMPK1 283259 sc-eQTL 2.09e-01 -0.0979 0.0776 0.722 B_Naive1 L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 9.30e-01 -0.00775 0.0876 0.723 B_Naive2 L2
ENSG00000132122 SPATA6 -855152 sc-eQTL 9.90e-01 0.00119 0.0988 0.723 B_Naive2 L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 7.25e-01 -0.0265 0.0752 0.723 B_Naive2 L2
ENSG00000162368 CMPK1 283259 sc-eQTL 4.62e-01 -0.0603 0.0818 0.723 B_Naive2 L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 2.10e-01 -0.12 0.0951 0.718 CD4_CTL L2
ENSG00000132122 SPATA6 -855152 sc-eQTL 8.02e-01 -0.0214 0.0853 0.718 CD4_CTL L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 4.07e-01 -0.0776 0.0934 0.718 CD4_CTL L2
ENSG00000162368 CMPK1 283259 sc-eQTL 6.06e-01 -0.0498 0.0965 0.718 CD4_CTL L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 8.74e-01 -0.00952 0.0602 0.722 CD4_Naive L2
ENSG00000132122 SPATA6 -855152 sc-eQTL 3.20e-01 0.0978 0.0981 0.722 CD4_Naive L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 4.64e-01 -0.0388 0.0529 0.722 CD4_Naive L2
ENSG00000162368 CMPK1 283259 sc-eQTL 1.86e-01 0.0798 0.0602 0.722 CD4_Naive L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 1.03e-01 0.123 0.0748 0.722 CD4_TCM L2
ENSG00000132122 SPATA6 -855152 sc-eQTL 9.55e-02 0.158 0.0944 0.722 CD4_TCM L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 7.03e-01 -0.0246 0.0644 0.722 CD4_TCM L2
ENSG00000162368 CMPK1 283259 sc-eQTL 8.00e-01 0.0167 0.0658 0.722 CD4_TCM L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 1.48e-01 0.109 0.0754 0.722 CD4_TEM L2
ENSG00000132122 SPATA6 -855152 sc-eQTL 3.93e-01 -0.0849 0.0993 0.722 CD4_TEM L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 1.23e-02 -0.182 0.072 0.722 CD4_TEM L2
ENSG00000162368 CMPK1 283259 sc-eQTL 9.72e-01 0.0029 0.0822 0.722 CD4_TEM L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 7.71e-01 -0.0226 0.0772 0.722 CD8_CTL L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 7.20e-01 -0.0274 0.0765 0.722 CD8_CTL L2
ENSG00000162368 CMPK1 283259 sc-eQTL 6.43e-01 0.0355 0.0763 0.722 CD8_CTL L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 3.69e-01 -0.0636 0.0707 0.722 CD8_Naive L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 3.29e-01 0.076 0.0776 0.722 CD8_Naive L2
ENSG00000162368 CMPK1 283259 sc-eQTL 2.56e-02 0.162 0.072 0.722 CD8_Naive L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 9.35e-01 0.00707 0.0869 0.713 CD8_TCM L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 6.76e-01 -0.0369 0.0881 0.713 CD8_TCM L2
ENSG00000162368 CMPK1 283259 sc-eQTL 8.12e-01 -0.0197 0.0827 0.713 CD8_TCM L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 3.56e-01 0.0862 0.0933 0.726 CD8_TEM L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 1.13e-01 -0.147 0.0922 0.726 CD8_TEM L2
ENSG00000162368 CMPK1 283259 sc-eQTL 9.21e-02 -0.155 0.0917 0.726 CD8_TEM L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 2.81e-01 0.0872 0.0806 0.723 MAIT L2
ENSG00000123473 STIL 302909 sc-eQTL 4.45e-01 0.0612 0.08 0.723 MAIT L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 4.89e-01 0.0545 0.0786 0.723 MAIT L2
ENSG00000162368 CMPK1 283259 sc-eQTL 5.03e-01 0.0537 0.08 0.723 MAIT L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 2.16e-01 -0.112 0.0906 0.72 NK_CD56bright L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 1.27e-01 -0.141 0.092 0.72 NK_CD56bright L2
ENSG00000162368 CMPK1 283259 sc-eQTL 3.30e-01 0.0905 0.0927 0.72 NK_CD56bright L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 7.62e-01 0.0248 0.0817 0.722 NK_CD56dim L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 2.90e-01 0.072 0.0679 0.722 NK_CD56dim L2
ENSG00000162368 CMPK1 283259 sc-eQTL 7.11e-02 0.125 0.069 0.722 NK_CD56dim L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 9.62e-01 -0.00468 0.0987 0.721 NK_HLA L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 4.70e-01 -0.0597 0.0825 0.721 NK_HLA L2
ENSG00000162368 CMPK1 283259 sc-eQTL 2.59e-01 -0.103 0.0912 0.721 NK_HLA L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 4.66e-01 0.0594 0.0813 0.722 NK_cytokine L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 1.16e-02 -0.193 0.0758 0.722 NK_cytokine L2
ENSG00000162368 CMPK1 283259 sc-eQTL 2.23e-01 0.102 0.0838 0.722 NK_cytokine L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 1.41e-01 -0.122 0.0823 0.733 PB L2
ENSG00000132122 SPATA6 -855152 sc-eQTL 4.12e-02 0.17 0.0821 0.733 PB L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 3.08e-01 0.11 0.108 0.733 PB L2
ENSG00000162368 CMPK1 283259 sc-eQTL 6.52e-01 0.0503 0.111 0.733 PB L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 2.63e-01 -0.0899 0.08 0.72 Pro_T L2
ENSG00000123473 STIL 302909 sc-eQTL 3.17e-01 0.0624 0.0621 0.72 Pro_T L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 2.79e-01 0.0892 0.0821 0.72 Pro_T L2
ENSG00000162368 CMPK1 283259 sc-eQTL 7.58e-01 -0.0281 0.0913 0.72 Pro_T L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 1.63e-01 0.113 0.081 0.722 Treg L2
ENSG00000132122 SPATA6 -855152 sc-eQTL 9.46e-01 -0.00554 0.081 0.722 Treg L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 6.13e-01 -0.0407 0.0803 0.722 Treg L2
ENSG00000162368 CMPK1 283259 sc-eQTL 9.67e-01 0.00302 0.0737 0.722 Treg L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 3.74e-01 -0.0892 0.1 0.729 cDC L2
ENSG00000123473 STIL 302909 sc-eQTL 9.37e-01 0.00691 0.0869 0.729 cDC L2
ENSG00000132122 SPATA6 -855152 sc-eQTL 1.39e-01 -0.152 0.102 0.729 cDC L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 9.52e-01 -0.00604 0.1 0.729 cDC L2
ENSG00000162366 PDZK1IP1 426012 sc-eQTL 3.68e-01 0.0757 0.0838 0.729 cDC L2
ENSG00000162368 CMPK1 283259 sc-eQTL 7.86e-01 0.0258 0.0946 0.729 cDC L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 3.06e-01 0.0831 0.081 0.722 cMono_IL1B L2
ENSG00000132122 SPATA6 -855152 sc-eQTL 5.46e-01 0.0506 0.0838 0.722 cMono_IL1B L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 6.56e-01 -0.0311 0.0698 0.722 cMono_IL1B L2
ENSG00000162368 CMPK1 283259 sc-eQTL 3.56e-01 0.0702 0.0759 0.722 cMono_IL1B L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 8.77e-01 -0.0139 0.0895 0.722 cMono_S100A L2
ENSG00000132122 SPATA6 -855152 sc-eQTL 7.10e-01 -0.0338 0.0905 0.722 cMono_S100A L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 5.85e-01 -0.0411 0.0751 0.722 cMono_S100A L2
ENSG00000162368 CMPK1 283259 sc-eQTL 5.46e-01 0.0525 0.0869 0.722 cMono_S100A L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 9.22e-01 -0.0103 0.105 0.721 gdT L2
ENSG00000123473 STIL 302909 sc-eQTL 1.04e-01 -0.15 0.0919 0.721 gdT L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 1.63e-02 0.241 0.0993 0.721 gdT L2
ENSG00000162368 CMPK1 283259 sc-eQTL 8.97e-01 0.014 0.108 0.721 gdT L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 3.34e-01 0.0964 0.0995 0.718 intMono L2
ENSG00000132122 SPATA6 -855152 sc-eQTL 7.71e-02 0.169 0.095 0.718 intMono L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 9.72e-01 0.00284 0.0821 0.718 intMono L2
ENSG00000162368 CMPK1 283259 sc-eQTL 4.48e-01 -0.0717 0.0943 0.718 intMono L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 1.19e-01 -0.142 0.0905 0.719 ncMono L2
ENSG00000132122 SPATA6 -855152 sc-eQTL 9.87e-01 0.00121 0.0758 0.719 ncMono L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 5.70e-01 0.0513 0.0902 0.719 ncMono L2
ENSG00000162368 CMPK1 283259 sc-eQTL 2.43e-01 0.103 0.088 0.719 ncMono L2
ENSG00000123472 ATPAF1 943189 sc-eQTL 8.04e-01 -0.0274 0.11 0.732 pDC L2
ENSG00000123473 STIL 302909 sc-eQTL 3.32e-01 0.0877 0.0902 0.732 pDC L2
ENSG00000132122 SPATA6 -855152 sc-eQTL 9.39e-01 0.00783 0.103 0.732 pDC L2
ENSG00000159658 EFCAB14 897942 sc-eQTL 2.31e-01 0.111 0.0928 0.732 pDC L2
ENSG00000162366 PDZK1IP1 426012 sc-eQTL 8.37e-01 -0.0171 0.0832 0.732 pDC L2
ENSG00000162368 CMPK1 283259 sc-eQTL 5.27e-01 -0.0629 0.0992 0.732 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123472 ATPAF1 943189 sc-eQTL 9.92e-01 -0.000791 0.0755 0.722 B_Memory LOneK1K
ENSG00000132122 SPATA6 -855152 sc-eQTL 1.56e-01 -0.135 0.0951 0.722 B_Memory LOneK1K
ENSG00000159658 EFCAB14 897942 sc-eQTL 2.12e-01 -0.0937 0.0749 0.722 B_Memory LOneK1K
ENSG00000162368 CMPK1 283259 sc-eQTL 7.62e-01 -0.0232 0.0764 0.722 B_Memory LOneK1K
ENSG00000123472 ATPAF1 943189 sc-eQTL 5.82e-01 0.0441 0.08 0.722 B_Naive LOneK1K
ENSG00000132122 SPATA6 -855152 sc-eQTL 3.74e-01 -0.087 0.0978 0.722 B_Naive LOneK1K
ENSG00000159658 EFCAB14 897942 sc-eQTL 9.90e-01 -0.000784 0.0626 0.722 B_Naive LOneK1K
ENSG00000162368 CMPK1 283259 sc-eQTL 2.14e-01 -0.0951 0.0762 0.722 B_Naive LOneK1K
ENSG00000123472 ATPAF1 943189 sc-eQTL 4.65e-01 0.0571 0.0779 0.722 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -855152 sc-eQTL 8.95e-01 -0.0107 0.0806 0.722 CD14_Mono LOneK1K
ENSG00000159658 EFCAB14 897942 sc-eQTL 7.16e-01 -0.0234 0.0643 0.722 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 283259 sc-eQTL 4.17e-01 0.0566 0.0697 0.722 CD14_Mono LOneK1K
ENSG00000123472 ATPAF1 943189 sc-eQTL 8.47e-01 -0.0168 0.0866 0.722 CD16_Mono LOneK1K
ENSG00000132122 SPATA6 -855152 sc-eQTL 2.23e-01 0.0851 0.0696 0.722 CD16_Mono LOneK1K
ENSG00000159658 EFCAB14 897942 sc-eQTL 5.92e-01 0.0436 0.0814 0.722 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 283259 sc-eQTL 7.90e-01 0.0218 0.0815 0.722 CD16_Mono LOneK1K
ENSG00000123472 ATPAF1 943189 sc-eQTL 5.31e-01 0.0469 0.0747 0.722 NK_CD56dim LOneK1K
ENSG00000159658 EFCAB14 897942 sc-eQTL 2.99e-01 -0.0646 0.062 0.722 NK_CD56dim LOneK1K
ENSG00000162368 CMPK1 283259 sc-eQTL 1.14e-01 0.0925 0.0583 0.722 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000272491 AL109659.2 -612505 eQTL 0.00417 -0.0923 0.0322 0.00101 0.0 0.345

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina