logo

Genes within 1Mb (chr1:47436297:G:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079277 MKNK1 819454 sc-eQTL 7.69e-01 0.0762 0.259 0.051 B_Activated L2
ENSG00000123472 ATPAF1 762430 sc-eQTL 1.91e-01 -0.322 0.246 0.051 B_Activated L2
ENSG00000142961 MOB3C 819406 sc-eQTL 2.12e-01 -0.26 0.208 0.051 B_Activated L2
ENSG00000159658 EFCAB14 717183 sc-eQTL 2.56e-01 0.289 0.254 0.051 B_Activated L2
ENSG00000162368 CMPK1 102500 sc-eQTL 6.87e-01 0.0974 0.241 0.051 B_Activated L2
ENSG00000079277 MKNK1 819454 sc-eQTL 6.58e-01 -0.102 0.23 0.05 CD4_CTL L2
ENSG00000123472 ATPAF1 762430 sc-eQTL 2.91e-01 -0.225 0.212 0.05 CD4_CTL L2
ENSG00000142961 MOB3C 819406 sc-eQTL 9.40e-01 0.0156 0.208 0.05 CD4_CTL L2
ENSG00000159658 EFCAB14 717183 sc-eQTL 4.04e-01 0.174 0.208 0.05 CD4_CTL L2
ENSG00000162368 CMPK1 102500 sc-eQTL 1.00e+00 -5.67e-05 0.215 0.05 CD4_CTL L2
ENSG00000079277 MKNK1 819454 sc-eQTL 5.71e-01 0.128 0.226 0.05 NK_HLA L2
ENSG00000123472 ATPAF1 762430 sc-eQTL 4.60e-01 -0.165 0.222 0.05 NK_HLA L2
ENSG00000142961 MOB3C 819406 sc-eQTL 3.74e-01 0.183 0.205 0.05 NK_HLA L2
ENSG00000159658 EFCAB14 717183 sc-eQTL 9.00e-01 -0.0233 0.186 0.05 NK_HLA L2
ENSG00000162368 CMPK1 102500 sc-eQTL 7.26e-01 0.0723 0.206 0.05 NK_HLA L2
ENSG00000079277 MKNK1 819454 sc-eQTL 2.90e-01 0.282 0.266 0.052 gdT L2
ENSG00000123472 ATPAF1 762430 sc-eQTL 2.14e-01 0.289 0.232 0.052 gdT L2
ENSG00000123473 STIL 122150 sc-eQTL 8.50e-01 -0.0392 0.207 0.052 gdT L2
ENSG00000142961 MOB3C 819406 sc-eQTL 3.97e-01 -0.208 0.245 0.052 gdT L2
ENSG00000159658 EFCAB14 717183 sc-eQTL 4.19e-01 -0.183 0.225 0.052 gdT L2
ENSG00000162368 CMPK1 102500 sc-eQTL 1.90e-01 0.315 0.239 0.052 gdT L2
ENSG00000079277 MKNK1 819454 sc-eQTL 3.34e-01 -0.217 0.224 0.051 pDC L2
ENSG00000123472 ATPAF1 762430 sc-eQTL 5.60e-01 -0.135 0.231 0.051 pDC L2
ENSG00000123473 STIL 122150 sc-eQTL 3.09e-01 -0.193 0.189 0.051 pDC L2
ENSG00000142961 MOB3C 819406 sc-eQTL 8.84e-01 0.0319 0.218 0.051 pDC L2
ENSG00000159658 EFCAB14 717183 sc-eQTL 1.88e-01 0.257 0.195 0.051 pDC L2
ENSG00000162366 PDZK1IP1 245253 sc-eQTL 7.58e-01 -0.0538 0.175 0.051 pDC L2
ENSG00000162368 CMPK1 102500 sc-eQTL 1.27e-01 0.318 0.207 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000159658 EFCAB14 717183 eQTL 0.0321 0.123 0.0575 0.0 0.0 0.0299
ENSG00000186564 FOXD2 280 eQTL 4.67e-02 0.147 0.0739 0.0 0.0 0.0299
ENSG00000237424 FOXD2-AS1 1656 eQTL 1.66e-09 0.443 0.0728 0.0367 0.0709 0.0299

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000186564 FOXD2 280 0.000386 0.000498 0.000157 0.000284 0.000328 0.000196 0.000504 0.000292 0.000494 0.000359 0.000551 0.000274 0.000641 0.000245 0.000152 0.000444 0.000239 0.000383 0.000228 0.000212 0.000475 0.00056 0.000385 0.000326 0.000711 0.000291 0.000411 0.000367 0.000462 0.000244 0.000369 0.000138 0.000126 0.000233 0.000211 0.00017 0.000192 0.000137 0.000162 0.000145 0.000113 0.000497 6.62e-05 2.07e-05 9.92e-05 0.000197 0.000141 0.000158 6.3e-05
ENSG00000237424 FOXD2-AS1 1656 8.27e-05 7.49e-05 1.76e-05 3.17e-05 1.41e-05 3.45e-05 9.94e-05 1.47e-05 8.33e-05 4.63e-05 0.000108 4.24e-05 0.000118 3.72e-05 2.1e-05 5.71e-05 4.64e-05 6.27e-05 1.78e-05 1.93e-05 4.11e-05 8.69e-05 7.84e-05 2.48e-05 0.000104 2.75e-05 3.78e-05 3.68e-05 7.34e-05 6.75e-05 5.58e-05 6.35e-06 9.09e-06 1.87e-05 2.58e-05 1.43e-05 9.12e-06 1.03e-05 1.37e-05 7.57e-06 3.87e-06 7.27e-05 1.05e-05 1.38e-06 8.55e-06 1.29e-05 1.08e-05 6.72e-06 4.26e-06