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Genes within 1Mb (chr1:46951703:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079277 MKNK1 334860 sc-eQTL 3.23e-01 -0.203 0.205 0.05 CD8_TEM L2
ENSG00000085998 POMGNT1 731398 sc-eQTL 1.62e-01 0.282 0.201 0.05 CD8_TEM L2
ENSG00000117461 PIK3R3 818667 sc-eQTL 8.24e-02 -0.317 0.182 0.05 CD8_TEM L2
ENSG00000117481 NSUN4 611526 sc-eQTL 1.82e-01 0.268 0.2 0.05 CD8_TEM L2
ENSG00000123472 ATPAF1 277836 sc-eQTL 6.54e-01 -0.0847 0.189 0.05 CD8_TEM L2
ENSG00000132128 LRRC41 648095 sc-eQTL 4.72e-01 0.139 0.193 0.05 CD8_TEM L2
ENSG00000142961 MOB3C 334812 sc-eQTL 7.54e-01 0.0592 0.189 0.05 CD8_TEM L2
ENSG00000159658 EFCAB14 232589 sc-eQTL 2.59e-01 -0.212 0.187 0.05 CD8_TEM L2
ENSG00000162368 CMPK1 -382094 sc-eQTL 8.25e-01 0.0414 0.187 0.05 CD8_TEM L2
ENSG00000173660 UQCRH 648005 sc-eQTL 9.18e-01 0.0181 0.176 0.05 CD8_TEM L2
ENSG00000079277 MKNK1 334860 sc-eQTL 7.07e-01 -0.0788 0.209 0.059 PB L2
ENSG00000085998 POMGNT1 731398 sc-eQTL 7.71e-01 -0.0574 0.197 0.059 PB L2
ENSG00000117481 NSUN4 611526 sc-eQTL 5.23e-01 0.144 0.225 0.059 PB L2
ENSG00000123472 ATPAF1 277836 sc-eQTL 3.86e-01 -0.122 0.14 0.059 PB L2
ENSG00000132128 LRRC41 648095 sc-eQTL 8.21e-01 0.0409 0.18 0.059 PB L2
ENSG00000142961 MOB3C 334812 sc-eQTL 2.35e-01 0.224 0.188 0.059 PB L2
ENSG00000159658 EFCAB14 232589 sc-eQTL 7.43e-01 0.0597 0.182 0.059 PB L2
ENSG00000162368 CMPK1 -382094 sc-eQTL 4.65e-01 -0.137 0.187 0.059 PB L2
ENSG00000173660 UQCRH 648005 sc-eQTL 8.79e-01 0.0169 0.111 0.059 PB L2
ENSG00000079277 MKNK1 334860 sc-eQTL 2.48e-03 0.62 0.201 0.058 gdT L2
ENSG00000085998 POMGNT1 731398 sc-eQTL 1.44e-01 0.291 0.198 0.058 gdT L2
ENSG00000085999 RAD54L 705242 sc-eQTL 1.99e-01 -0.178 0.138 0.058 gdT L2
ENSG00000117461 PIK3R3 818667 sc-eQTL 4.38e-01 0.14 0.18 0.058 gdT L2
ENSG00000117481 NSUN4 611526 sc-eQTL 4.65e-01 -0.151 0.206 0.058 gdT L2
ENSG00000123472 ATPAF1 277836 sc-eQTL 2.35e-01 0.215 0.181 0.058 gdT L2
ENSG00000123473 STIL -362444 sc-eQTL 9.42e-01 -0.0117 0.161 0.058 gdT L2
ENSG00000132128 LRRC41 648095 sc-eQTL 4.55e-01 -0.15 0.201 0.058 gdT L2
ENSG00000142961 MOB3C 334812 sc-eQTL 7.66e-01 0.057 0.191 0.058 gdT L2
ENSG00000159658 EFCAB14 232589 sc-eQTL 3.96e-01 0.15 0.175 0.058 gdT L2
ENSG00000162368 CMPK1 -382094 sc-eQTL 9.63e-01 -0.00863 0.187 0.058 gdT L2
ENSG00000173660 UQCRH 648005 sc-eQTL 7.30e-01 0.0628 0.182 0.058 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079277 MKNK1 334860 eQTL 0.00189 0.0899 0.0288 0.0 0.0 0.0491
ENSG00000085998 POMGNT1 731398 eQTL 0.0494 0.0479 0.0243 0.0 0.0 0.0491
ENSG00000162366 PDZK1IP1 -239341 eQTL 0.00512 -0.183 0.0652 0.0 0.0 0.0491

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162366 PDZK1IP1 -239341 1.29e-06 1.01e-06 2.75e-07 1.16e-06 3.89e-07 6.36e-07 1.55e-06 3.97e-07 1.38e-06 6.29e-07 1.84e-06 7.63e-07 2.34e-06 2.81e-07 5.37e-07 9.78e-07 8.85e-07 8e-07 8.59e-07 5.97e-07 7.96e-07 1.69e-06 9.35e-07 5.48e-07 2.23e-06 6.68e-07 9.55e-07 8.53e-07 1.44e-06 1.24e-06 6.78e-07 2.98e-07 3.01e-07 6.29e-07 5.23e-07 4.89e-07 7.14e-07 2.71e-07 5.01e-07 2.88e-07 2.72e-07 1.64e-06 1.14e-07 8.08e-08 3.17e-07 1.35e-07 2.56e-07 6.05e-08 1.83e-07