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Genes within 1Mb (chr1:46807789:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079277 MKNK1 190946 sc-eQTL 4.29e-01 0.182 0.229 0.05 CD4_CTL L2
ENSG00000085998 POMGNT1 587484 sc-eQTL 4.62e-01 0.158 0.215 0.05 CD4_CTL L2
ENSG00000117481 NSUN4 467612 sc-eQTL 3.74e-01 -0.189 0.212 0.05 CD4_CTL L2
ENSG00000123472 ATPAF1 133922 sc-eQTL 6.18e-01 -0.106 0.212 0.05 CD4_CTL L2
ENSG00000132128 LRRC41 504181 sc-eQTL 2.70e-01 -0.245 0.221 0.05 CD4_CTL L2
ENSG00000142961 MOB3C 190898 sc-eQTL 6.24e-01 -0.102 0.207 0.05 CD4_CTL L2
ENSG00000159658 EFCAB14 88675 sc-eQTL 4.43e-01 -0.159 0.207 0.05 CD4_CTL L2
ENSG00000162368 CMPK1 -526008 sc-eQTL 1.88e-01 0.282 0.213 0.05 CD4_CTL L2
ENSG00000173660 UQCRH 504091 sc-eQTL 9.73e-01 0.00654 0.196 0.05 CD4_CTL L2
ENSG00000079277 MKNK1 190946 sc-eQTL 2.42e-01 -0.259 0.221 0.051 CD8_TCM L2
ENSG00000085998 POMGNT1 587484 sc-eQTL 5.81e-01 0.116 0.21 0.051 CD8_TCM L2
ENSG00000117461 PIK3R3 674753 sc-eQTL 8.98e-01 -0.0228 0.178 0.051 CD8_TCM L2
ENSG00000117481 NSUN4 467612 sc-eQTL 4.41e-01 -0.168 0.218 0.051 CD8_TCM L2
ENSG00000123472 ATPAF1 133922 sc-eQTL 6.70e-01 -0.0816 0.191 0.051 CD8_TCM L2
ENSG00000132128 LRRC41 504181 sc-eQTL 3.64e-01 0.194 0.213 0.051 CD8_TCM L2
ENSG00000142961 MOB3C 190898 sc-eQTL 6.59e-01 -0.0908 0.206 0.051 CD8_TCM L2
ENSG00000159658 EFCAB14 88675 sc-eQTL 2.83e-01 -0.208 0.193 0.051 CD8_TCM L2
ENSG00000162368 CMPK1 -526008 sc-eQTL 3.72e-01 -0.163 0.182 0.051 CD8_TCM L2
ENSG00000173660 UQCRH 504091 sc-eQTL 4.80e-01 -0.137 0.193 0.051 CD8_TCM L2
ENSG00000079277 MKNK1 190946 sc-eQTL 2.39e-01 0.26 0.22 0.051 NK_CD56bright L2
ENSG00000085998 POMGNT1 587484 sc-eQTL 3.27e-01 0.214 0.218 0.051 NK_CD56bright L2
ENSG00000117461 PIK3R3 674753 sc-eQTL 6.50e-01 -0.0917 0.202 0.051 NK_CD56bright L2
ENSG00000117481 NSUN4 467612 sc-eQTL 1.68e-01 0.276 0.2 0.051 NK_CD56bright L2
ENSG00000123472 ATPAF1 133922 sc-eQTL 5.23e-01 -0.128 0.2 0.051 NK_CD56bright L2
ENSG00000132128 LRRC41 504181 sc-eQTL 9.37e-02 -0.351 0.208 0.051 NK_CD56bright L2
ENSG00000142961 MOB3C 190898 sc-eQTL 5.51e-01 -0.123 0.206 0.051 NK_CD56bright L2
ENSG00000159658 EFCAB14 88675 sc-eQTL 8.68e-01 -0.0341 0.204 0.051 NK_CD56bright L2
ENSG00000162368 CMPK1 -526008 sc-eQTL 8.50e-02 -0.352 0.203 0.051 NK_CD56bright L2
ENSG00000173660 UQCRH 504091 sc-eQTL 5.16e-01 0.115 0.177 0.051 NK_CD56bright L2
ENSG00000079277 MKNK1 190946 sc-eQTL 9.85e-01 -0.00421 0.226 0.05 Pro_T L2
ENSG00000085998 POMGNT1 587484 sc-eQTL 5.11e-01 -0.137 0.207 0.05 Pro_T L2
ENSG00000085999 RAD54L 561328 sc-eQTL 7.74e-01 -0.0443 0.154 0.05 Pro_T L2
ENSG00000117461 PIK3R3 674753 sc-eQTL 4.27e-01 0.159 0.199 0.05 Pro_T L2
ENSG00000117481 NSUN4 467612 sc-eQTL 7.42e-01 -0.0726 0.22 0.05 Pro_T L2
ENSG00000123472 ATPAF1 133922 sc-eQTL 9.16e-01 0.0187 0.177 0.05 Pro_T L2
ENSG00000123473 STIL -506358 sc-eQTL 7.61e-01 0.0419 0.137 0.05 Pro_T L2
ENSG00000132128 LRRC41 504181 sc-eQTL 3.02e-01 -0.207 0.2 0.05 Pro_T L2
ENSG00000142961 MOB3C 190898 sc-eQTL 4.80e-01 0.144 0.203 0.05 Pro_T L2
ENSG00000159658 EFCAB14 88675 sc-eQTL 5.88e-03 -0.497 0.178 0.05 Pro_T L2
ENSG00000162368 CMPK1 -526008 sc-eQTL 6.06e-01 -0.104 0.201 0.05 Pro_T L2
ENSG00000173660 UQCRH 504091 sc-eQTL 6.18e-01 -0.0657 0.131 0.05 Pro_T L2
ENSG00000079277 MKNK1 190946 sc-eQTL 2.43e-01 0.301 0.257 0.052 gdT L2
ENSG00000085998 POMGNT1 587484 sc-eQTL 3.25e-01 0.243 0.246 0.052 gdT L2
ENSG00000085999 RAD54L 561328 sc-eQTL 2.23e-01 -0.209 0.171 0.052 gdT L2
ENSG00000117461 PIK3R3 674753 sc-eQTL 7.31e-01 -0.077 0.224 0.052 gdT L2
ENSG00000117481 NSUN4 467612 sc-eQTL 3.54e-01 -0.237 0.255 0.052 gdT L2
ENSG00000123472 ATPAF1 133922 sc-eQTL 1.25e-01 0.344 0.223 0.052 gdT L2
ENSG00000123473 STIL -506358 sc-eQTL 4.96e-01 0.136 0.199 0.052 gdT L2
ENSG00000132128 LRRC41 504181 sc-eQTL 4.73e-01 -0.179 0.249 0.052 gdT L2
ENSG00000142961 MOB3C 190898 sc-eQTL 4.17e-01 -0.193 0.237 0.052 gdT L2
ENSG00000159658 EFCAB14 88675 sc-eQTL 1.61e-01 -0.306 0.217 0.052 gdT L2
ENSG00000162368 CMPK1 -526008 sc-eQTL 1.56e-01 0.329 0.231 0.052 gdT L2
ENSG00000173660 UQCRH 504091 sc-eQTL 4.34e-01 -0.177 0.225 0.052 gdT L2
ENSG00000079277 MKNK1 190946 sc-eQTL 2.76e-01 0.202 0.185 0.051 intMono L2
ENSG00000085998 POMGNT1 587484 sc-eQTL 9.04e-01 -0.0249 0.206 0.051 intMono L2
ENSG00000117480 FAAH 413472 sc-eQTL 5.23e-01 -0.133 0.208 0.051 intMono L2
ENSG00000117481 NSUN4 467612 sc-eQTL 2.96e-01 0.226 0.215 0.051 intMono L2
ENSG00000123472 ATPAF1 133922 sc-eQTL 9.32e-01 0.019 0.22 0.051 intMono L2
ENSG00000132128 LRRC41 504181 sc-eQTL 7.66e-01 -0.0677 0.227 0.051 intMono L2
ENSG00000142961 MOB3C 190898 sc-eQTL 6.49e-01 0.0991 0.217 0.051 intMono L2
ENSG00000159658 EFCAB14 88675 sc-eQTL 3.45e-01 -0.171 0.181 0.051 intMono L2
ENSG00000162368 CMPK1 -526008 sc-eQTL 2.56e-01 -0.237 0.208 0.051 intMono L2
ENSG00000173660 UQCRH 504091 sc-eQTL 4.86e-02 0.305 0.154 0.051 intMono L2
ENSG00000079277 MKNK1 190946 sc-eQTL 4.06e-01 0.133 0.16 0.052 ncMono L2
ENSG00000085998 POMGNT1 587484 sc-eQTL 1.29e-01 -0.288 0.188 0.052 ncMono L2
ENSG00000117480 FAAH 413472 sc-eQTL 4.30e-01 -0.162 0.204 0.052 ncMono L2
ENSG00000117481 NSUN4 467612 sc-eQTL 1.36e-01 0.311 0.208 0.052 ncMono L2
ENSG00000123472 ATPAF1 133922 sc-eQTL 7.46e-01 -0.0639 0.197 0.052 ncMono L2
ENSG00000132128 LRRC41 504181 sc-eQTL 6.63e-01 0.0942 0.216 0.052 ncMono L2
ENSG00000142961 MOB3C 190898 sc-eQTL 3.78e-01 -0.182 0.206 0.052 ncMono L2
ENSG00000159658 EFCAB14 88675 sc-eQTL 5.37e-02 -0.375 0.193 0.052 ncMono L2
ENSG00000162368 CMPK1 -526008 sc-eQTL 8.32e-01 0.0405 0.191 0.052 ncMono L2
ENSG00000173660 UQCRH 504091 sc-eQTL 3.65e-01 -0.118 0.13 0.052 ncMono L2
ENSG00000079277 MKNK1 190946 sc-eQTL 8.33e-01 -0.0485 0.229 0.051 pDC L2
ENSG00000085998 POMGNT1 587484 sc-eQTL 8.01e-01 -0.0475 0.188 0.051 pDC L2
ENSG00000117480 FAAH 413472 sc-eQTL 2.01e-01 0.232 0.181 0.051 pDC L2
ENSG00000117481 NSUN4 467612 sc-eQTL 5.99e-01 -0.115 0.219 0.051 pDC L2
ENSG00000123472 ATPAF1 133922 sc-eQTL 6.69e-01 -0.101 0.235 0.051 pDC L2
ENSG00000123473 STIL -506358 sc-eQTL 1.02e-01 -0.315 0.192 0.051 pDC L2
ENSG00000132128 LRRC41 504181 sc-eQTL 5.66e-01 -0.133 0.232 0.051 pDC L2
ENSG00000142961 MOB3C 190898 sc-eQTL 9.54e-01 0.0127 0.222 0.051 pDC L2
ENSG00000159658 EFCAB14 88675 sc-eQTL 5.23e-01 0.127 0.199 0.051 pDC L2
ENSG00000162366 PDZK1IP1 -383255 sc-eQTL 5.24e-01 0.113 0.178 0.051 pDC L2
ENSG00000162368 CMPK1 -526008 sc-eQTL 1.68e-01 0.292 0.211 0.051 pDC L2
ENSG00000173660 UQCRH 504091 sc-eQTL 8.23e-01 0.0402 0.179 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079277 MKNK1 190946 eQTL 0.000919 0.137 0.0411 0.0 0.0 0.025
ENSG00000132128 LRRC41 504181 eQTL 0.0139 -0.139 0.0565 0.00148 0.0 0.025
ENSG00000159658 EFCAB14 88675 eQTL 0.0335 0.134 0.0631 0.0 0.0 0.025
ENSG00000162366 PDZK1IP1 -383255 eQTL 0.045 0.187 0.0932 0.0 0.0 0.025
ENSG00000237424 FOXD2-AS1 -626852 eQTL 0.015 0.198 0.0811 0.0 0.0 0.025

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079277 MKNK1 190946 2.75e-06 3.66e-06 5.15e-07 1.99e-06 5.79e-07 7.53e-07 2.47e-06 6.98e-07 2.28e-06 1.17e-06 2.78e-06 1.39e-06 5.05e-06 1.2e-06 8.98e-07 1.73e-06 1.58e-06 2.15e-06 1.42e-06 1.27e-06 1.32e-06 3.12e-06 2.88e-06 9.71e-07 4.55e-06 1.33e-06 1.34e-06 1.81e-06 2.85e-06 2.52e-06 2.01e-06 4.17e-07 5.36e-07 1.49e-06 1.31e-06 1.01e-06 9.22e-07 4.03e-07 1.22e-06 3.76e-07 3.45e-07 4.1e-06 6.19e-07 1.79e-07 3.73e-07 4.01e-07 8.08e-07 2.32e-07 2.76e-07
ENSG00000237424 FOXD2-AS1 -626852 3.07e-07 1.78e-07 7.92e-08 2.27e-07 1.07e-07 8.75e-08 2.74e-07 5.82e-08 1.89e-07 1.05e-07 1.96e-07 1.23e-07 3.48e-07 8.42e-08 6.12e-08 9.6e-08 6.63e-08 2.15e-07 7.53e-08 6.29e-08 1.33e-07 1.65e-07 1.86e-07 4.15e-08 2.99e-07 1.31e-07 1.22e-07 1.44e-07 1.34e-07 1.85e-07 1.27e-07 8.48e-08 3.74e-08 1.02e-07 4.78e-08 3.94e-08 6.2e-08 7.92e-08 5.27e-08 6.07e-08 5.05e-08 2.19e-07 3.37e-08 1.11e-08 3.29e-08 1.01e-08 7e-08 0.0 4.85e-08