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Genes within 1Mb (chr1:46748281:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079277 MKNK1 131438 sc-eQTL 3.84e-01 0.18 0.206 0.05 NK_HLA L2
ENSG00000085998 POMGNT1 527976 sc-eQTL 2.11e-01 -0.23 0.184 0.05 NK_HLA L2
ENSG00000086015 MAST2 961294 sc-eQTL 5.56e-01 -0.122 0.206 0.05 NK_HLA L2
ENSG00000117461 PIK3R3 615245 sc-eQTL 2.76e-01 -0.215 0.196 0.05 NK_HLA L2
ENSG00000117481 NSUN4 408104 sc-eQTL 2.52e-01 0.235 0.204 0.05 NK_HLA L2
ENSG00000123472 ATPAF1 74414 sc-eQTL 3.47e-01 0.191 0.203 0.05 NK_HLA L2
ENSG00000132128 LRRC41 444673 sc-eQTL 5.78e-01 -0.114 0.204 0.05 NK_HLA L2
ENSG00000142961 MOB3C 131390 sc-eQTL 8.85e-01 0.0272 0.188 0.05 NK_HLA L2
ENSG00000159658 EFCAB14 29167 sc-eQTL 7.49e-01 0.0546 0.17 0.05 NK_HLA L2
ENSG00000162368 CMPK1 -585516 sc-eQTL 2.55e-01 -0.214 0.188 0.05 NK_HLA L2
ENSG00000173660 UQCRH 444583 sc-eQTL 5.92e-01 -0.0986 0.183 0.05 NK_HLA L2
ENSG00000197429 IPP 997628 sc-eQTL 9.00e-01 -0.0255 0.202 0.05 NK_HLA L2
ENSG00000079277 MKNK1 131438 sc-eQTL 2.94e-01 0.225 0.213 0.05 Pro_T L2
ENSG00000085998 POMGNT1 527976 sc-eQTL 1.50e-01 -0.283 0.196 0.05 Pro_T L2
ENSG00000085999 RAD54L 501820 sc-eQTL 2.76e-01 0.159 0.146 0.05 Pro_T L2
ENSG00000086015 MAST2 961294 sc-eQTL 8.91e-01 0.0267 0.194 0.05 Pro_T L2
ENSG00000117461 PIK3R3 615245 sc-eQTL 9.49e-01 -0.012 0.189 0.05 Pro_T L2
ENSG00000117481 NSUN4 408104 sc-eQTL 1.82e-01 -0.278 0.208 0.05 Pro_T L2
ENSG00000123472 ATPAF1 74414 sc-eQTL 3.94e-01 0.143 0.168 0.05 Pro_T L2
ENSG00000123473 STIL -565866 sc-eQTL 7.51e-01 0.0414 0.13 0.05 Pro_T L2
ENSG00000132128 LRRC41 444673 sc-eQTL 1.76e-01 0.257 0.189 0.05 Pro_T L2
ENSG00000142961 MOB3C 131390 sc-eQTL 3.33e-01 0.187 0.193 0.05 Pro_T L2
ENSG00000159658 EFCAB14 29167 sc-eQTL 4.47e-01 -0.131 0.172 0.05 Pro_T L2
ENSG00000162368 CMPK1 -585516 sc-eQTL 8.78e-01 -0.0293 0.191 0.05 Pro_T L2
ENSG00000173660 UQCRH 444583 sc-eQTL 3.06e-01 0.128 0.124 0.05 Pro_T L2
ENSG00000197429 IPP 997628 sc-eQTL 2.13e-01 0.266 0.213 0.05 Pro_T L2
ENSG00000079277 MKNK1 131438 sc-eQTL 7.70e-01 -0.0537 0.184 0.051 cDC L2
ENSG00000085998 POMGNT1 527976 sc-eQTL 6.94e-01 -0.0797 0.202 0.051 cDC L2
ENSG00000086015 MAST2 961294 sc-eQTL 8.53e-01 -0.0333 0.18 0.051 cDC L2
ENSG00000117480 FAAH 353964 sc-eQTL 8.09e-01 0.0482 0.199 0.051 cDC L2
ENSG00000117481 NSUN4 408104 sc-eQTL 7.28e-02 -0.37 0.205 0.051 cDC L2
ENSG00000123472 ATPAF1 74414 sc-eQTL 7.00e-01 0.078 0.202 0.051 cDC L2
ENSG00000123473 STIL -565866 sc-eQTL 4.77e-01 -0.125 0.175 0.051 cDC L2
ENSG00000132128 LRRC41 444673 sc-eQTL 5.98e-01 0.107 0.202 0.051 cDC L2
ENSG00000142961 MOB3C 131390 sc-eQTL 5.41e-01 -0.11 0.179 0.051 cDC L2
ENSG00000159658 EFCAB14 29167 sc-eQTL 3.63e-01 0.184 0.202 0.051 cDC L2
ENSG00000162366 PDZK1IP1 -442763 sc-eQTL 3.78e-01 0.149 0.169 0.051 cDC L2
ENSG00000162368 CMPK1 -585516 sc-eQTL 7.16e-01 0.0696 0.191 0.051 cDC L2
ENSG00000173660 UQCRH 444583 sc-eQTL 3.57e-01 0.118 0.127 0.051 cDC L2
ENSG00000197429 IPP 997628 sc-eQTL 4.26e-01 -0.137 0.171 0.051 cDC L2
ENSG00000079277 MKNK1 131438 sc-eQTL 7.33e-01 -0.0518 0.152 0.052 ncMono L2
ENSG00000085998 POMGNT1 527976 sc-eQTL 2.11e-01 0.224 0.179 0.052 ncMono L2
ENSG00000086015 MAST2 961294 sc-eQTL 4.31e-01 0.136 0.173 0.052 ncMono L2
ENSG00000117480 FAAH 353964 sc-eQTL 3.82e-01 -0.169 0.193 0.052 ncMono L2
ENSG00000117481 NSUN4 408104 sc-eQTL 8.33e-01 0.0418 0.198 0.052 ncMono L2
ENSG00000123472 ATPAF1 74414 sc-eQTL 8.59e-02 -0.32 0.185 0.052 ncMono L2
ENSG00000132128 LRRC41 444673 sc-eQTL 3.94e-01 -0.174 0.204 0.052 ncMono L2
ENSG00000142961 MOB3C 131390 sc-eQTL 6.42e-01 -0.0912 0.196 0.052 ncMono L2
ENSG00000159658 EFCAB14 29167 sc-eQTL 3.83e-01 -0.161 0.185 0.052 ncMono L2
ENSG00000162368 CMPK1 -585516 sc-eQTL 5.52e-01 0.108 0.181 0.052 ncMono L2
ENSG00000173660 UQCRH 444583 sc-eQTL 5.05e-01 -0.0823 0.123 0.052 ncMono L2
ENSG00000079277 MKNK1 131438 sc-eQTL 6.15e-01 -0.108 0.215 0.054 pDC L2
ENSG00000085998 POMGNT1 527976 sc-eQTL 2.26e-03 0.533 0.172 0.054 pDC L2
ENSG00000086015 MAST2 961294 sc-eQTL 7.56e-02 0.31 0.173 0.054 pDC L2
ENSG00000117480 FAAH 353964 sc-eQTL 5.97e-01 0.0906 0.171 0.054 pDC L2
ENSG00000117481 NSUN4 408104 sc-eQTL 7.64e-01 0.0619 0.206 0.054 pDC L2
ENSG00000123472 ATPAF1 74414 sc-eQTL 5.17e-02 -0.429 0.219 0.054 pDC L2
ENSG00000123473 STIL -565866 sc-eQTL 5.81e-02 -0.343 0.18 0.054 pDC L2
ENSG00000132128 LRRC41 444673 sc-eQTL 5.45e-01 0.132 0.218 0.054 pDC L2
ENSG00000142961 MOB3C 131390 sc-eQTL 8.38e-01 0.0427 0.209 0.054 pDC L2
ENSG00000159658 EFCAB14 29167 sc-eQTL 1.60e-01 -0.263 0.186 0.054 pDC L2
ENSG00000162366 PDZK1IP1 -442763 sc-eQTL 6.68e-01 -0.072 0.167 0.054 pDC L2
ENSG00000162368 CMPK1 -585516 sc-eQTL 8.41e-02 0.344 0.198 0.054 pDC L2
ENSG00000173660 UQCRH 444583 sc-eQTL 5.51e-01 0.101 0.168 0.054 pDC L2
ENSG00000197429 IPP 997628 sc-eQTL 2.19e-01 -0.245 0.199 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079277 MKNK1 131438 eQTL 0.836 -0.00633 0.0305 0.00672 0.0 0.0486
ENSG00000269956 MKNK1-AS1 209585 eQTL 0.0494 0.111 0.0562 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117481 \N 408104 3.21e-07 1.78e-07 6.28e-08 2.25e-07 1.02e-07 7.75e-08 2.24e-07 5.84e-08 1.71e-07 9.35e-08 1.83e-07 1.31e-07 2.38e-07 8.07e-08 5.97e-08 9.35e-08 4.45e-08 1.91e-07 7.42e-08 5.35e-08 1.27e-07 1.81e-07 1.75e-07 4.27e-08 2.28e-07 1.65e-07 1.23e-07 1.28e-07 1.39e-07 1.17e-07 1.22e-07 3.55e-08 4.23e-08 9.08e-08 4.78e-08 4.6e-08 5.02e-08 8.57e-08 6.28e-08 5.24e-08 5.28e-08 2e-07 3.4e-08 1.56e-08 4e-08 1.19e-08 7.92e-08 2e-09 4.61e-08
ENSG00000123472 \N 74414 5.75e-06 6.92e-06 6.35e-07 3.32e-06 1.5e-06 1.53e-06 8.05e-06 1.19e-06 4.76e-06 3.15e-06 8.15e-06 2.88e-06 1.02e-05 2.19e-06 9.59e-07 4.56e-06 2.24e-06 3.71e-06 1.62e-06 1.54e-06 2.86e-06 6.85e-06 4.93e-06 1.92e-06 8.97e-06 2.29e-06 3.1e-06 1.86e-06 5.61e-06 6.08e-06 3.37e-06 4.59e-07 7.92e-07 2.19e-06 2.03e-06 1.71e-06 1.02e-06 5.42e-07 9.61e-07 5.79e-07 4.53e-07 8.32e-06 7.85e-07 1.61e-07 7.74e-07 1.1e-06 1.16e-06 6.58e-07 5.92e-07