Genes within 1Mb (chr1:46499424:C:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079277 MKNK1 -117419 sc-eQTL 9.03e-01 -0.0332 0.272 0.052 PB L2
ENSG00000085998 POMGNT1 279119 sc-eQTL 6.76e-01 -0.108 0.257 0.052 PB L2
ENSG00000086015 MAST2 712437 sc-eQTL 3.48e-01 0.251 0.266 0.052 PB L2
ENSG00000117448 AKR1A1 948881 sc-eQTL 4.63e-01 0.102 0.138 0.052 PB L2
ENSG00000117450 PRDX1 976377 sc-eQTL 7.40e-01 0.0416 0.125 0.052 PB L2
ENSG00000117481 NSUN4 159247 sc-eQTL 7.44e-01 0.0963 0.294 0.052 PB L2
ENSG00000123472 ATPAF1 -174443 sc-eQTL 3.14e-01 -0.184 0.182 0.052 PB L2
ENSG00000132128 LRRC41 195816 sc-eQTL 7.09e-01 0.0878 0.235 0.052 PB L2
ENSG00000132780 NASP 915578 sc-eQTL 3.73e-01 -0.247 0.277 0.052 PB L2
ENSG00000142961 MOB3C -117467 sc-eQTL 5.35e-01 0.153 0.246 0.052 PB L2
ENSG00000159592 GPBP1L1 811311 sc-eQTL 9.81e-01 -0.00681 0.287 0.052 PB L2
ENSG00000159596 TMEM69 811243 sc-eQTL 7.26e-01 0.0841 0.24 0.052 PB L2
ENSG00000159658 EFCAB14 -219690 sc-eQTL 4.85e-01 -0.166 0.237 0.052 PB L2
ENSG00000162368 CMPK1 -834373 sc-eQTL 5.67e-01 -0.14 0.244 0.052 PB L2
ENSG00000173660 UQCRH 195726 sc-eQTL 3.28e-01 -0.142 0.144 0.052 PB L2
ENSG00000197429 IPP 748771 sc-eQTL 2.28e-01 -0.327 0.27 0.052 PB L2
ENSG00000280670 CCDC163 999345 sc-eQTL 5.06e-01 -0.143 0.214 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000123472 ATPAF1 -174443 eQTL 0.00682 0.121 0.0446 0.0 0.0 0.0515
ENSG00000142961 MOB3C -117467 eQTL 0.00814 0.115 0.0434 0.0 0.0 0.0515
ENSG00000224805 LINC00853 -679826 eQTL 0.00475 -0.13 0.0461 0.0 0.0 0.0515
ENSG00000280670 CCDC163 999345 eQTL 3.25e-05 0.355 0.0849 0.0 0.0 0.0515


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000142961 MOB3C -117467 5.13e-06 5.49e-06 8.35e-07 3.15e-06 1.38e-06 1.56e-06 6.45e-06 9.76e-07 5.13e-06 2.45e-06 5.78e-06 3.52e-06 7.82e-06 1.97e-06 1.31e-06 3.38e-06 1.84e-06 3.61e-06 1.55e-06 1.15e-06 2.9e-06 4.9e-06 4.63e-06 1.34e-06 7.97e-06 1.87e-06 2.62e-06 1.79e-06 4.92e-06 5.51e-06 2.81e-06 6.09e-07 5.9e-07 1.59e-06 2.13e-06 9.86e-07 9.56e-07 3.91e-07 8.69e-07 4.27e-07 2.08e-07 7.31e-06 4.02e-07 1.8e-07 4.19e-07 7.09e-07 8.08e-07 2.72e-07 3.03e-07
ENSG00000224805 LINC00853 -679826 4.21e-07 2.4e-07 7.6e-08 2.54e-07 1.02e-07 8.4e-08 3.11e-07 5.68e-08 1.96e-07 1.11e-07 2.47e-07 1.31e-07 3.6e-07 8.54e-08 6.2e-08 9.48e-08 5.42e-08 2.33e-07 7.76e-08 6.29e-08 1.23e-07 1.98e-07 2.04e-07 4.15e-08 3.27e-07 1.56e-07 1.31e-07 1.52e-07 1.58e-07 1.8e-07 1.59e-07 3.9e-08 3.38e-08 9.9e-08 6.87e-08 3.3e-08 6.14e-08 8.17e-08 5.59e-08 6.19e-08 5.81e-08 2.43e-07 3.35e-08 1.13e-08 3.66e-08 9.86e-09 7.97e-08 2e-09 4.81e-08