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Genes within 1Mb (chr1:46443551:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000070759 TESK2 952388 sc-eQTL 6.50e-01 0.0954 0.21 0.052 gdT L2
ENSG00000079277 MKNK1 -173292 sc-eQTL 7.81e-01 -0.0631 0.226 0.052 gdT L2
ENSG00000085998 POMGNT1 223246 sc-eQTL 8.68e-01 -0.0362 0.217 0.052 gdT L2
ENSG00000085999 RAD54L 197090 sc-eQTL 6.75e-03 0.405 0.147 0.052 gdT L2
ENSG00000086015 MAST2 656564 sc-eQTL 1.96e-01 -0.263 0.202 0.052 gdT L2
ENSG00000117448 AKR1A1 893008 sc-eQTL 1.94e-01 0.272 0.209 0.052 gdT L2
ENSG00000117450 PRDX1 920504 sc-eQTL 7.69e-01 0.0577 0.196 0.052 gdT L2
ENSG00000117461 PIK3R3 310515 sc-eQTL 4.53e-01 -0.148 0.196 0.052 gdT L2
ENSG00000117481 NSUN4 103374 sc-eQTL 3.02e-01 0.232 0.224 0.052 gdT L2
ENSG00000123472 ATPAF1 -230316 sc-eQTL 7.37e-01 0.0665 0.197 0.052 gdT L2
ENSG00000123473 STIL -870596 sc-eQTL 9.78e-01 0.00476 0.175 0.052 gdT L2
ENSG00000132128 LRRC41 139943 sc-eQTL 2.38e-01 0.258 0.218 0.052 gdT L2
ENSG00000132780 NASP 859705 sc-eQTL 7.96e-01 0.0538 0.208 0.052 gdT L2
ENSG00000142961 MOB3C -173340 sc-eQTL 9.44e-01 -0.0146 0.208 0.052 gdT L2
ENSG00000159592 GPBP1L1 755438 sc-eQTL 5.66e-01 0.131 0.228 0.052 gdT L2
ENSG00000159596 TMEM69 755370 sc-eQTL 6.96e-01 0.0795 0.203 0.052 gdT L2
ENSG00000159658 EFCAB14 -275563 sc-eQTL 8.53e-01 -0.0354 0.192 0.052 gdT L2
ENSG00000162368 CMPK1 -890246 sc-eQTL 8.19e-01 0.0469 0.204 0.052 gdT L2
ENSG00000173660 UQCRH 139853 sc-eQTL 1.71e-01 0.27 0.197 0.052 gdT L2
ENSG00000197429 IPP 692898 sc-eQTL 6.32e-01 -0.107 0.224 0.052 gdT L2
ENSG00000280670 CCDC163 943472 sc-eQTL 4.01e-02 -0.413 0.199 0.052 gdT L2
ENSG00000070759 TESK2 952388 sc-eQTL 1.86e-01 -0.272 0.205 0.054 pDC L2
ENSG00000079277 MKNK1 -173292 sc-eQTL 8.45e-02 -0.355 0.205 0.054 pDC L2
ENSG00000085998 POMGNT1 223246 sc-eQTL 9.67e-01 -0.00708 0.17 0.054 pDC L2
ENSG00000086015 MAST2 656564 sc-eQTL 5.05e-01 0.112 0.168 0.054 pDC L2
ENSG00000117448 AKR1A1 893008 sc-eQTL 5.14e-01 -0.118 0.18 0.054 pDC L2
ENSG00000117450 PRDX1 920504 sc-eQTL 3.19e-01 0.161 0.161 0.054 pDC L2
ENSG00000117480 FAAH 49234 sc-eQTL 9.58e-01 0.00868 0.164 0.054 pDC L2
ENSG00000117481 NSUN4 103374 sc-eQTL 2.41e-01 0.232 0.197 0.054 pDC L2
ENSG00000123472 ATPAF1 -230316 sc-eQTL 6.52e-01 0.0959 0.212 0.054 pDC L2
ENSG00000123473 STIL -870596 sc-eQTL 3.58e-01 0.16 0.174 0.054 pDC L2
ENSG00000132128 LRRC41 139943 sc-eQTL 9.97e-01 0.000831 0.21 0.054 pDC L2
ENSG00000132780 NASP 859705 sc-eQTL 6.49e-01 0.0775 0.17 0.054 pDC L2
ENSG00000142961 MOB3C -173340 sc-eQTL 3.29e-01 -0.196 0.2 0.054 pDC L2
ENSG00000159592 GPBP1L1 755438 sc-eQTL 8.20e-01 -0.0463 0.203 0.054 pDC L2
ENSG00000159596 TMEM69 755370 sc-eQTL 9.38e-01 -0.015 0.191 0.054 pDC L2
ENSG00000159658 EFCAB14 -275563 sc-eQTL 8.58e-01 0.0321 0.18 0.054 pDC L2
ENSG00000162366 PDZK1IP1 -747493 sc-eQTL 7.55e-01 -0.0501 0.16 0.054 pDC L2
ENSG00000162368 CMPK1 -890246 sc-eQTL 8.30e-01 -0.0411 0.192 0.054 pDC L2
ENSG00000173660 UQCRH 139853 sc-eQTL 9.78e-01 -0.00453 0.162 0.054 pDC L2
ENSG00000197429 IPP 692898 sc-eQTL 6.49e-01 -0.0872 0.191 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 952388 eQTL 0.0343 0.0678 0.032 0.0 0.0 0.0554
ENSG00000079277 MKNK1 -173292 eQTL 0.00118 -0.0869 0.0267 0.0 0.0 0.0554
ENSG00000085999 RAD54L 195863 eQTL 0.0242 0.0954 0.0422 0.0 0.0 0.0554
ENSG00000086015 MAST2 656564 eQTL 0.00267 -0.127 0.0421 0.0 0.0 0.0554
ENSG00000117448 AKR1A1 893008 eQTL 0.0197 0.0564 0.0242 0.0 0.0 0.0554
ENSG00000117450 PRDX1 920504 eQTL 0.0188 0.0582 0.0247 0.0 0.0 0.0554
ENSG00000117480 FAAH 49234 eQTL 0.0162 -0.109 0.0454 0.0 0.0 0.0554
ENSG00000123472 ATPAF1 -230316 eQTL 0.00713 -0.112 0.0415 0.0 0.0 0.0554
ENSG00000159658 EFCAB14 -275563 eQTL 0.0318 0.088 0.0409 0.0 0.0 0.0554
ENSG00000197429 IPP 692901 eQTL 0.0101 -0.112 0.0435 0.0 0.0 0.0554
ENSG00000234329 AL604028.2 791725 eQTL 0.0373 0.111 0.0532 0.0 0.0 0.0554

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina