Genes within 1Mb (chr1:46416446:A:G):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 925283 eQTL 4.16e-03 -0.0417 0.0145 0.0 0.0 0.493
ENSG00000085998 POMGNT1 196141 eQTL 3.88e-03 -0.0296 0.0102 0.0 0.0 0.493
ENSG00000085999 RAD54L 168758 eQTL 7.90e-03 0.0511 0.0192 0.0 0.0 0.493
ENSG00000086015 MAST2 629459 eQTL 9.72e-10 0.116 0.0189 0.00119 0.0 0.493
ENSG00000117461 PIK3R3 283410 eQTL 1.88e-02 0.0463 0.0197 0.0 0.0 0.493
ENSG00000117480 FAAH 22129 eQTL 1.27e-08 0.117 0.0204 0.0268 0.0519 0.493
ENSG00000117481 NSUN4 76269 eQTL 4.64e-04 -0.0829 0.0236 0.00253 0.0 0.493
ENSG00000132780 NASP 832600 eQTL 2.41e-02 -0.0355 0.0157 0.0 0.0 0.493
ENSG00000142961 MOB3C -200445 eQTL 3.00e-02 -0.0399 0.0184 0.0 0.0 0.493
ENSG00000159592 GPBP1L1 728333 eQTL 3.05e-02 0.0226 0.0104 0.0 0.0 0.493
ENSG00000159658 EFCAB14 -302668 eQTL 4.65e-02 -0.0371 0.0186 0.0 0.0 0.493
ENSG00000225447 RPS15AP10 770249 eQTL 8.23e-05 -0.128 0.0324 0.0 0.0 0.493
ENSG00000226252 AL135960.1 -809351 eQTL 2.09e-02 -0.0616 0.0266 0.0 0.0 0.493
ENSG00000232022 FAAHP1 -15683 eQTL 2.16e-02 -0.067 0.0291 0.00949 0.00315 0.493
ENSG00000234329 AL604028.2 764620 eQTL 2.56e-06 -0.113 0.024 0.0 0.0 0.493


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 925283 2.77e-07 1.59e-07 6.57e-08 2.53e-07 9.87e-08 8.75e-08 1.99e-07 5.85e-08 1.59e-07 9.35e-08 1.69e-07 1.57e-07 1.79e-07 7.95e-08 5.69e-08 8.71e-08 4.31e-08 1.77e-07 7.39e-08 6.29e-08 1.18e-07 1.56e-07 1.58e-07 4.17e-08 2.02e-07 1.51e-07 1.22e-07 1.12e-07 1.26e-07 1.06e-07 1.21e-07 8.32e-08 3.8e-08 9.8e-08 6.87e-08 2.74e-08 5.76e-08 7.98e-08 4.83e-08 2.74e-08 8.48e-08 1.48e-07 3.46e-08 1.92e-08 5.4e-08 9.44e-09 7.26e-08 3.09e-09 4.61e-08
ENSG00000085998 POMGNT1 196141 5.11e-06 7.52e-06 1.82e-06 5.82e-06 1.82e-06 3.28e-06 8.17e-06 2.18e-06 7.4e-06 5.09e-06 9.71e-06 5.16e-06 1.02e-05 2.9e-06 2.13e-06 6.45e-06 3.71e-06 5e-06 2.18e-06 2.86e-06 4.64e-06 7.92e-06 5.56e-06 3.35e-06 9.38e-06 3.1e-06 4.8e-06 3.74e-06 6.6e-06 5.55e-06 4.1e-06 1.61e-06 1.13e-06 2.93e-06 4.77e-06 2.36e-06 1.82e-06 2.15e-06 2.18e-06 2.69e-06 1.81e-06 7.99e-06 1.57e-06 5.28e-07 9.34e-07 1.76e-06 2.03e-06 1.51e-06 9.57e-07
ENSG00000085999 RAD54L 168758 6.57e-06 9.44e-06 2.53e-06 7.65e-06 2.31e-06 4.22e-06 9.57e-06 2.92e-06 1.03e-05 5.9e-06 1.24e-05 6.46e-06 1.29e-05 3.88e-06 3.21e-06 6.93e-06 4.62e-06 7.92e-06 2.64e-06 3.83e-06 6.39e-06 1.04e-05 7.23e-06 3.78e-06 1.28e-05 4.39e-06 6.94e-06 5.24e-06 9.05e-06 7.77e-06 5.69e-06 1.64e-06 1.4e-06 3.54e-06 6.2e-06 2.84e-06 1.76e-06 2.73e-06 2.22e-06 3.3e-06 1.85e-06 9.84e-06 2.23e-06 5.9e-07 1.7e-06 2.15e-06 3.24e-06 1.57e-06 1.38e-06
ENSG00000086015 MAST2 629459 6.97e-07 6.07e-07 2.06e-07 3.15e-07 1.07e-07 2.63e-07 5.28e-07 1.37e-07 4.74e-07 2.62e-07 8.15e-07 5.28e-07 6.08e-07 1.1e-07 2.77e-07 2.83e-07 2.77e-07 4.07e-07 2.51e-07 2.68e-07 2.52e-07 4.31e-07 3.7e-07 2.65e-07 7.72e-07 2.49e-07 3.37e-07 2.74e-07 2.98e-07 5.17e-07 3.43e-07 2.08e-07 6.78e-08 1.54e-07 3.23e-07 1.49e-07 2.83e-07 2.03e-07 1.24e-07 3.32e-07 2.96e-07 4.04e-07 6.58e-08 1.99e-07 1.82e-07 3.41e-08 1.43e-07 6.95e-08 5.84e-08
ENSG00000117480 FAAH 22129 7.5e-05 6.95e-05 1.91e-05 3.62e-05 2.07e-05 3.8e-05 0.000104 2.35e-05 9.08e-05 6.58e-05 0.000116 5.08e-05 0.000133 3.87e-05 2.24e-05 7.01e-05 4.89e-05 8.22e-05 2.54e-05 2.4e-05 5.08e-05 0.000102 7.84e-05 3.15e-05 0.000127 3.31e-05 5.26e-05 4.5e-05 8.81e-05 5.25e-05 6.53e-05 7.31e-06 1.17e-05 2.53e-05 3.24e-05 1.79e-05 1.1e-05 1.35e-05 1.55e-05 1.17e-05 7.59e-06 7.99e-05 1.07e-05 2.26e-06 9.78e-06 1.56e-05 1.72e-05 9.7e-06 6.82e-06
ENSG00000159658 EFCAB14 -302668 2.08e-06 2.81e-06 7.11e-07 2.63e-06 4.79e-07 7.43e-07 1.82e-06 1.03e-06 2.53e-06 1.66e-06 3.13e-06 3.04e-06 3.43e-06 1.39e-06 1e-06 2.01e-06 1.58e-06 2.12e-06 1.51e-06 1e-06 1.99e-06 3.4e-06 2.64e-06 1.71e-06 3.8e-06 1.22e-06 1.86e-06 1.44e-06 2.07e-06 1.83e-06 2.07e-06 9.62e-07 7.51e-07 1.42e-06 2.03e-06 8.88e-07 9.63e-07 5.58e-07 1.06e-06 9.79e-07 1.05e-06 3.26e-06 4.55e-07 2.81e-07 6.11e-07 3.41e-07 1.13e-06 6.95e-07 5.83e-07
ENSG00000225447 RPS15AP10 770249 3.53e-07 2.67e-07 1.03e-07 3.62e-07 1.07e-07 1.44e-07 3.11e-07 7.12e-08 2.35e-07 1.39e-07 3.21e-07 3.11e-07 2.94e-07 8.54e-08 1.01e-07 1.26e-07 6.63e-08 2.87e-07 9.71e-08 9.17e-08 1.52e-07 2.3e-07 2.04e-07 1.03e-07 3.27e-07 2.2e-07 1.74e-07 1.7e-07 1.4e-07 1.85e-07 1.76e-07 4.21e-08 6.08e-08 1.03e-07 2.61e-07 5.14e-08 1.1e-07 1.17e-07 4e-08 4.12e-08 1.98e-07 1.79e-07 2.99e-08 8.08e-08 1.16e-07 1.75e-08 9.73e-08 3.79e-08 5.43e-08
ENSG00000232022 FAAHP1 -15683 8.53e-05 7.78e-05 2.1e-05 3.94e-05 2.2e-05 4.16e-05 0.000113 2.54e-05 9.62e-05 7.21e-05 0.000124 5.41e-05 0.000142 4.43e-05 2.53e-05 7.72e-05 5.35e-05 8.86e-05 2.83e-05 2.55e-05 5.58e-05 0.000108 8.56e-05 3.47e-05 0.00014 3.52e-05 5.8e-05 4.86e-05 9.51e-05 5.99e-05 6.99e-05 7.6e-06 1.3e-05 2.84e-05 3.41e-05 2e-05 1.23e-05 1.42e-05 1.71e-05 1.27e-05 8.55e-06 8.78e-05 1.2e-05 2.47e-06 1.13e-05 1.74e-05 1.78e-05 9.95e-06 7.5e-06
ENSG00000234329 AL604028.2 764620 3.53e-07 2.89e-07 1.05e-07 3.57e-07 1.1e-07 1.44e-07 3.25e-07 7.12e-08 2.35e-07 1.46e-07 3.25e-07 3.21e-07 3.04e-07 8.54e-08 1.07e-07 1.26e-07 6.81e-08 2.87e-07 9.71e-08 1.08e-07 1.59e-07 2.3e-07 2.11e-07 1.04e-07 3.41e-07 2.2e-07 1.74e-07 1.7e-07 1.44e-07 1.89e-07 1.78e-07 4.28e-08 5.73e-08 1.02e-07 2.7e-07 5.23e-08 1.13e-07 1.12e-07 4.55e-08 4.2e-08 2.12e-07 1.79e-07 3.55e-08 9.61e-08 1.14e-07 1.78e-08 9.46e-08 3.84e-08 5.19e-08