Genes within 1Mb (chr1:46402558:G:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 911395 eQTL 4.81e-03 0.0928 0.0329 0.0 0.0 0.055
ENSG00000079277 MKNK1 -214285 eQTL 1.75e-09 0.165 0.0271 0.0 0.0 0.055
ENSG00000086015 MAST2 615571 eQTL 6.73e-06 -0.195 0.0431 0.0 0.0 0.055
ENSG00000117461 PIK3R3 269522 eQTL 4.31e-03 -0.127 0.0445 0.0 0.0 0.055
ENSG00000123472 ATPAF1 -271309 eQTL 4.97e-02 0.0842 0.0428 0.0 0.0 0.055
ENSG00000142961 MOB3C -214333 eQTL 1.02e-04 0.161 0.0414 0.0 0.0 0.055
ENSG00000159658 EFCAB14 -316556 pQTL 1.95e-02 0.0838 0.0358 0.0 0.0 0.0531
ENSG00000159658 EFCAB14 -316556 eQTL 1.18e-03 0.137 0.042 0.0 0.0 0.055
ENSG00000162366 PDZK1IP1 -788486 eQTL 2.95e-02 -0.136 0.0622 0.0 0.0 0.055
ENSG00000225447 RPS15AP10 756361 eQTL 3.34e-06 0.342 0.073 0.0 0.0 0.055
ENSG00000234329 AL604028.2 750732 eQTL 3.56e-08 0.3 0.054 0.0 0.0 0.055
ENSG00000269956 MKNK1-AS1 -136138 eQTL 1.28e-02 0.127 0.0509 0.0 0.0 0.055


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 911395 8.15e-07 1.42e-07 5.49e-08 2.44e-07 9.8e-08 1.03e-07 2.4e-07 5.2e-08 1.45e-07 6.08e-08 1.73e-07 9.19e-08 2.05e-07 8e-08 5.97e-08 7.49e-08 4.18e-08 1.91e-07 7.36e-08 4.8e-08 1.26e-07 1.25e-07 1.64e-07 2.91e-08 1.85e-07 1.14e-07 1.17e-07 9.74e-08 1.32e-07 1.06e-07 1.09e-07 3.06e-08 3.16e-08 9.52e-08 2.97e-08 2.95e-08 5.3e-08 9.22e-08 6.76e-08 3.67e-08 4.69e-08 1.55e-07 3.25e-08 0.0 2.64e-08 1.83e-08 1.24e-07 3.99e-09 4.85e-08
ENSG00000079277 MKNK1 -214285 1.24e-05 4.3e-06 4.43e-07 2.04e-06 4.53e-07 1.56e-06 3.02e-06 4.28e-07 2.07e-06 1.18e-06 2.45e-06 1.45e-06 5.72e-06 1.37e-06 1.26e-06 2e-06 1.56e-06 3.05e-06 1.44e-06 1.19e-06 1.14e-06 3.49e-06 3.37e-06 1.22e-06 4.32e-06 1.29e-06 1.6e-06 1.44e-06 3.9e-06 2.88e-06 1.97e-06 3.41e-07 4.31e-07 1.59e-06 1.27e-06 6.84e-07 7.5e-07 3.66e-07 1.24e-06 3.27e-07 2.88e-07 4.54e-06 3.99e-07 5.87e-09 2.87e-07 2.93e-07 4.63e-07 1.15e-07 2.89e-07
ENSG00000086015 MAST2 615571 1.32e-06 4.63e-07 7.87e-08 4.43e-07 1.08e-07 3.28e-07 5.76e-07 5.89e-08 2.53e-07 1.6e-07 3.92e-07 2.04e-07 6.98e-07 1.23e-07 2.44e-07 1.39e-07 1.62e-07 4.07e-07 2.51e-07 8.1e-08 1.59e-07 2.7e-07 3.3e-07 7.22e-08 5.75e-07 1.65e-07 2.24e-07 1.52e-07 3.58e-07 4.61e-07 2.43e-07 5.38e-08 4.37e-08 1.5e-07 2.15e-07 5.7e-08 6.67e-08 7.61e-08 4.11e-08 6.05e-08 4.84e-08 5.29e-07 4.59e-08 3.06e-08 8.68e-08 9.44e-09 7.92e-08 1.92e-09 4.83e-08
ENSG00000117461 PIK3R3 269522 7.6e-06 2.57e-06 2.75e-07 1.96e-06 4.51e-07 9.33e-07 2.03e-06 3.9e-07 1.72e-06 6.73e-07 1.89e-06 1.28e-06 3.53e-06 1.31e-06 9.73e-07 1.22e-06 9.97e-07 2.19e-06 1.13e-06 5.62e-07 6.12e-07 2.34e-06 2.16e-06 8.52e-07 2.82e-06 7.43e-07 1.2e-06 8.14e-07 1.98e-06 1.67e-06 1.18e-06 2.31e-07 2.75e-07 1.28e-06 8.07e-07 5.26e-07 6.89e-07 2.31e-07 7.85e-07 3.33e-07 2.81e-07 3.28e-06 5.88e-07 1.81e-08 3.55e-07 1.98e-07 2.38e-07 8.67e-08 1.14e-07
ENSG00000123472 ATPAF1 -271309 7.81e-06 2.49e-06 2.72e-07 1.85e-06 4.48e-07 9.87e-07 1.98e-06 3.97e-07 1.71e-06 6.94e-07 1.87e-06 1.27e-06 3.53e-06 1.21e-06 9.5e-07 1.24e-06 1.04e-06 2.21e-06 1.08e-06 5.11e-07 6.34e-07 2.31e-06 2.13e-06 8.48e-07 2.69e-06 7.38e-07 1.17e-06 8.46e-07 1.91e-06 1.65e-06 1.16e-06 2.45e-07 2.86e-07 1.24e-06 7.57e-07 5.24e-07 6.86e-07 2.38e-07 7.83e-07 3.32e-07 2.8e-07 3.36e-06 6.19e-07 1.8e-08 3.76e-07 1.97e-07 2.7e-07 7.81e-08 1.13e-07
ENSG00000142961 MOB3C -214333 1.24e-05 4.3e-06 4.43e-07 2.04e-06 4.53e-07 1.56e-06 3.02e-06 4.28e-07 2.07e-06 1.18e-06 2.45e-06 1.45e-06 5.72e-06 1.37e-06 1.26e-06 2e-06 1.56e-06 3.05e-06 1.44e-06 1.19e-06 1.14e-06 3.49e-06 3.37e-06 1.22e-06 4.32e-06 1.29e-06 1.6e-06 1.44e-06 3.9e-06 2.88e-06 1.97e-06 3.41e-07 4.31e-07 1.59e-06 1.27e-06 6.84e-07 7.5e-07 3.66e-07 1.24e-06 3.28e-07 2.88e-07 4.54e-06 3.99e-07 5.87e-09 2.87e-07 2.93e-07 4.63e-07 1.15e-07 2.89e-07
ENSG00000159658 EFCAB14 -316556 4.85e-06 2.12e-06 2.14e-07 1.53e-06 3.71e-07 7.73e-07 1.31e-06 3.26e-07 1.42e-06 6.07e-07 2.01e-06 8.67e-07 2.64e-06 5.76e-07 4.19e-07 9.54e-07 9.57e-07 1.54e-06 5.75e-07 6.16e-07 7.54e-07 1.97e-06 1.64e-06 5.65e-07 2.33e-06 4.28e-07 1.01e-06 6.93e-07 1.66e-06 1.39e-06 8.35e-07 2.52e-07 1.98e-07 6.15e-07 5.49e-07 4.42e-07 5.1e-07 1.61e-07 5.18e-07 2.05e-07 2.56e-07 2.51e-06 3.86e-07 1.13e-08 2.98e-07 1.14e-07 2.09e-07 7.28e-08 6.58e-08
ENSG00000162366 PDZK1IP1 -788486 1.13e-06 1.76e-07 6.26e-08 3.56e-07 1.01e-07 1.57e-07 3.33e-07 5.48e-08 1.54e-07 9.35e-08 1.69e-07 1.2e-07 3.04e-07 8.54e-08 9.2e-08 7.98e-08 4.25e-08 2.75e-07 9.19e-08 5.87e-08 1.18e-07 1.65e-07 1.89e-07 3.49e-08 2.36e-07 1.26e-07 1.31e-07 1.06e-07 1.48e-07 1.59e-07 1.27e-07 3.55e-08 3.96e-08 1.01e-07 5.24e-08 3.11e-08 4.49e-08 8.93e-08 6.29e-08 6.43e-08 5.33e-08 2.19e-07 3.14e-08 3.84e-08 3.34e-08 1.92e-08 1.22e-07 3.83e-09 4.9e-08
ENSG00000225447 RPS15AP10 756361 1.29e-06 1.92e-07 6.41e-08 3.48e-07 1.07e-07 1.64e-07 3.57e-07 5.43e-08 1.71e-07 9.72e-08 1.83e-07 1.23e-07 3.48e-07 8.26e-08 1.01e-07 8.71e-08 5.42e-08 2.9e-07 9.97e-08 5.61e-08 1.26e-07 1.76e-07 2.11e-07 3.51e-08 2.74e-07 1.22e-07 1.33e-07 1.12e-07 1.58e-07 1.85e-07 1.39e-07 3.78e-08 3.73e-08 1.23e-07 6.25e-08 3.36e-08 3.91e-08 8.71e-08 5.59e-08 6.92e-08 5.65e-08 2.6e-07 2.28e-08 3.37e-08 4e-08 1.8e-08 1.18e-07 3.81e-09 4.88e-08
ENSG00000234329 AL604028.2 750732 1.31e-06 1.92e-07 6.55e-08 3.43e-07 1.1e-07 1.71e-07 3.7e-07 5.43e-08 1.71e-07 1.03e-07 1.86e-07 1.23e-07 3.6e-07 8.55e-08 1.07e-07 9.01e-08 5.57e-08 2.93e-07 1.13e-07 5.61e-08 1.26e-07 1.81e-07 2.11e-07 3.59e-08 2.74e-07 1.22e-07 1.33e-07 1.12e-07 1.6e-07 1.89e-07 1.43e-07 3.84e-08 3.73e-08 1.23e-07 6.35e-08 3.36e-08 3.7e-08 8.61e-08 5.69e-08 7.04e-08 5.71e-08 2.6e-07 2.28e-08 3.26e-08 4e-08 1.65e-08 1.21e-07 3.8e-09 5.04e-08
ENSG00000269956 MKNK1-AS1 -136138 4.04e-05 6.92e-06 7.1e-07 3.39e-06 1.33e-06 4.18e-06 8.61e-06 9.96e-07 4.91e-06 2.65e-06 5.69e-06 3.33e-06 9.48e-06 2.07e-06 9.41e-07 3.78e-06 1.87e-06 4.46e-06 1.56e-06 1.02e-06 2.9e-06 5.98e-06 4.69e-06 1.72e-06 8.25e-06 1.74e-06 2.28e-06 1.78e-06 5.34e-06 5.36e-06 2.62e-06 5.42e-07 6.12e-07 2.02e-06 2.24e-06 8.88e-07 9.07e-07 3.97e-07 8.51e-07 5.94e-07 2.79e-07 8.39e-06 9.1e-07 8.1e-08 5.92e-07 3.22e-07 9.64e-07 2.15e-07 2.09e-07