Genes within 1Mb (chr1:46393076:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 901913 eQTL 1.50e-04 -0.0551 0.0145 0.0 0.0 0.471
ENSG00000085998 POMGNT1 172771 eQTL 7.15e-05 -0.0406 0.0102 0.0 0.0 0.471
ENSG00000085999 RAD54L 145388 eQTL 8.08e-03 0.0509 0.0192 0.0 0.0 0.471
ENSG00000086015 MAST2 606089 eQTL 2.15e-06 0.0906 0.019 0.0 0.0 0.471
ENSG00000117461 PIK3R3 260040 eQTL 9.51e-03 0.0511 0.0197 0.00106 0.0 0.471
ENSG00000117480 FAAH -1241 eQTL 1.05e-05 0.0909 0.0205 0.0611 0.0444 0.471
ENSG00000117481 NSUN4 52899 eQTL 3.55e-11 -0.156 0.0232 0.0115 0.00939 0.471
ENSG00000132128 LRRC41 89468 eQTL 4.34e-02 -0.0338 0.0167 0.0 0.0 0.471
ENSG00000159658 EFCAB14 -326038 pQTL 3.95e-02 -0.0325 0.0158 0.0 0.0 0.484
ENSG00000225447 RPS15AP10 746879 eQTL 2.72e-03 -0.0976 0.0325 0.0 0.0 0.471
ENSG00000232022 FAAHP1 -39053 eQTL 6.00e-02 -0.0549 0.0292 0.00382 0.00109 0.471
ENSG00000234329 AL604028.2 741250 eQTL 6.09e-06 -0.109 0.024 0.0 0.0 0.471


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 901913 2.95e-07 1.34e-07 4.98e-08 2.01e-07 9.16e-08 8.45e-08 1.67e-07 5.2e-08 1.45e-07 5.67e-08 1.54e-07 9.19e-08 1.59e-07 7.64e-08 5.91e-08 7.53e-08 4.17e-08 1.44e-07 6.75e-08 4.8e-08 1.13e-07 1.24e-07 1.44e-07 3.49e-08 1.72e-07 1.26e-07 1.13e-07 1.04e-07 1.16e-07 1.05e-07 1.02e-07 4.32e-08 4.02e-08 8.56e-08 5.64e-08 3.94e-08 5.58e-08 9.25e-08 6.59e-08 7.53e-08 5.44e-08 1.46e-07 4.7e-08 1.05e-08 3.42e-08 1.87e-08 1.21e-07 3.89e-09 4.79e-08
ENSG00000085998 POMGNT1 172771 4.74e-06 5.16e-06 3.66e-07 2.52e-06 8.02e-07 1.21e-06 3.57e-06 1e-06 5.06e-06 1.46e-06 4.71e-06 3.6e-06 7.58e-06 2.17e-06 1.2e-06 1.99e-06 2.06e-06 2.72e-06 1.42e-06 8.96e-07 1.4e-06 4.14e-06 3.46e-06 1.66e-06 5.93e-06 1.25e-06 1.8e-06 1.48e-06 3.81e-06 3.62e-06 2.51e-06 4.72e-07 5.69e-07 1.26e-06 1.99e-06 8.85e-07 8.91e-07 4.25e-07 1.28e-06 3.81e-07 2.89e-07 4.56e-06 4.34e-07 1.38e-07 3.01e-07 3.52e-07 6.27e-07 2.3e-07 2.82e-07
ENSG00000085999 RAD54L 145388 4.85e-06 7.76e-06 6.89e-07 3.47e-06 1.27e-06 1.66e-06 5.66e-06 1.01e-06 4.54e-06 2.11e-06 6.19e-06 2.86e-06 7.67e-06 2.13e-06 1.39e-06 2.68e-06 1.92e-06 3.83e-06 1.45e-06 1.14e-06 2.05e-06 4.91e-06 4.6e-06 1.57e-06 8.28e-06 1.72e-06 2.62e-06 1.87e-06 4.48e-06 4.43e-06 2.68e-06 5.26e-07 6.52e-07 1.68e-06 2.03e-06 9.5e-07 9.42e-07 4.92e-07 1.05e-06 4.28e-07 1.96e-07 5.67e-06 4e-07 1.9e-07 3.34e-07 5.88e-07 8.69e-07 2.07e-07 2.02e-07
ENSG00000086015 MAST2 606089 7.74e-07 3.47e-07 7.76e-08 2.96e-07 1.1e-07 1.57e-07 4.09e-07 6.12e-08 2.66e-07 1.46e-07 2.98e-07 2.28e-07 4.88e-07 1.07e-07 1.01e-07 1.13e-07 9.3e-08 3.04e-07 1.36e-07 8.25e-08 1.33e-07 2.45e-07 2.2e-07 3.67e-08 6.02e-07 2.07e-07 1.83e-07 1.95e-07 1.6e-07 2.39e-07 1.93e-07 7.41e-08 4.96e-08 1.02e-07 1.54e-07 3.05e-08 9.52e-08 7.92e-08 4.9e-08 8.66e-09 3.68e-08 2.74e-07 3.18e-08 5.67e-08 5.49e-08 8.42e-09 7.52e-08 2.05e-09 4.99e-08
ENSG00000117480 FAAH -1241 5.6e-05 4.26e-05 7.19e-06 1.71e-05 7.14e-06 1.82e-05 5.51e-05 6.03e-06 4.11e-05 1.89e-05 5.04e-05 2.18e-05 6.26e-05 1.76e-05 8.74e-06 2.56e-05 2.25e-05 3.18e-05 9.7e-06 7.75e-06 2.02e-05 4.53e-05 3.86e-05 1.07e-05 5.6e-05 1.1e-05 1.83e-05 1.61e-05 3.97e-05 3.04e-05 2.65e-05 1.8e-06 3.06e-06 8.1e-06 1.37e-05 6.81e-06 3.65e-06 3.5e-06 5.77e-06 3.71e-06 1.87e-06 4.87e-05 4.68e-06 4.33e-07 2.95e-06 4.98e-06 4.82e-06 2.1e-06 1.53e-06
ENSG00000117481 NSUN4 52899 1.46e-05 2.03e-05 2.23e-06 9.4e-06 2.32e-06 6.12e-06 1.88e-05 2.22e-06 1.64e-05 5.94e-06 1.79e-05 7.87e-06 2.55e-05 6.03e-06 3.97e-06 6.98e-06 8.2e-06 1.17e-05 3.64e-06 3.59e-06 6.56e-06 1.28e-05 1.37e-05 3.73e-06 2.46e-05 4.5e-06 5.97e-06 5.22e-06 1.44e-05 1.22e-05 1.04e-05 9.97e-07 1.24e-06 3.26e-06 6.09e-06 2.86e-06 1.79e-06 1.93e-06 2.2e-06 9.82e-07 9.79e-07 1.86e-05 2.21e-06 2.66e-07 7.93e-07 1.74e-06 1.48e-06 7.04e-07 4.89e-07
ENSG00000132780 \N 809230 3.21e-07 1.5e-07 5.82e-08 2.22e-07 9.24e-08 8.37e-08 1.99e-07 5.4e-08 1.44e-07 6.75e-08 1.73e-07 1.15e-07 2.05e-07 8.07e-08 5.72e-08 7.5e-08 4.18e-08 1.72e-07 7.09e-08 5.46e-08 1.26e-07 1.31e-07 1.58e-07 2.91e-08 2.17e-07 1.26e-07 1.19e-07 1.12e-07 1.24e-07 1.05e-07 1.06e-07 4.43e-08 3.13e-08 9.3e-08 3.02e-08 3.65e-08 3.7e-08 8.93e-08 6.58e-08 5.96e-08 5.77e-08 1.48e-07 5.2e-08 5.89e-09 2.82e-08 1.65e-08 1.2e-07 3.8e-09 4.85e-08
ENSG00000159588 \N 769019 3.62e-07 1.56e-07 5.91e-08 2.31e-07 1.01e-07 8.75e-08 2.24e-07 5.48e-08 1.59e-07 7.6e-08 1.62e-07 1.22e-07 2.29e-07 8.44e-08 5.69e-08 7.74e-08 4.18e-08 1.8e-07 7.29e-08 5.75e-08 1.25e-07 1.47e-07 1.58e-07 2.87e-08 2.36e-07 1.31e-07 1.22e-07 1.28e-07 1.31e-07 1.05e-07 1.21e-07 5.24e-08 3.38e-08 9.8e-08 3.57e-08 3.2e-08 5.02e-08 8.61e-08 6.42e-08 5.32e-08 6.14e-08 1.59e-07 5.21e-08 1.24e-08 3.29e-08 1.71e-08 1.15e-07 3.78e-09 4.81e-08
ENSG00000159658 EFCAB14 -326038 1.44e-06 1.48e-06 3.2e-07 1.17e-06 2.48e-07 6.02e-07 1.48e-06 3.22e-07 1.66e-06 4.48e-07 1.84e-06 8.26e-07 2.47e-06 3.9e-07 5.5e-07 7.95e-07 9e-07 8.82e-07 8.21e-07 6.46e-07 3.91e-07 1.72e-06 8.61e-07 6.1e-07 2.36e-06 5.53e-07 9.41e-07 9.09e-07 1.29e-06 1.25e-06 8.06e-07 2.38e-07 2.15e-07 5.53e-07 5.49e-07 3.02e-07 5.76e-07 1.46e-07 2.94e-07 1.86e-07 2.38e-07 1.55e-06 9.6e-08 1.67e-07 1.81e-07 1.29e-07 1.71e-07 8.57e-08 5.86e-08
ENSG00000225447 RPS15AP10 746879 3.77e-07 1.7e-07 6.15e-08 2.26e-07 9.87e-08 8.4e-08 2.4e-07 5.53e-08 1.71e-07 9.35e-08 1.63e-07 1.31e-07 2.38e-07 8.55e-08 5.43e-08 7.89e-08 4.31e-08 2.04e-07 7.36e-08 5.61e-08 1.25e-07 1.56e-07 1.58e-07 2.83e-08 2.59e-07 1.43e-07 1.23e-07 1.36e-07 1.31e-07 1.17e-07 1.26e-07 5.08e-08 3.56e-08 9.81e-08 4.04e-08 3.04e-08 5.26e-08 8.63e-08 6.28e-08 3.09e-08 4.92e-08 1.6e-07 5.24e-08 1.27e-08 3.55e-08 1.19e-08 1e-07 1.88e-09 4.79e-08
ENSG00000234329 AL604028.2 741250 3.92e-07 1.67e-07 6.15e-08 2.26e-07 9.87e-08 8.4e-08 2.5e-07 5.53e-08 1.75e-07 9.35e-08 1.61e-07 1.31e-07 2.38e-07 8.55e-08 5.36e-08 7.89e-08 4.45e-08 2.04e-07 7.42e-08 6.02e-08 1.27e-07 1.65e-07 1.58e-07 2.68e-08 2.74e-07 1.43e-07 1.29e-07 1.42e-07 1.31e-07 1.24e-07 1.26e-07 4.75e-08 3.56e-08 9.58e-08 4.04e-08 3.28e-08 6.04e-08 8.63e-08 6.28e-08 3.12e-08 5.36e-08 1.6e-07 5.27e-08 1.27e-08 3.36e-08 1.01e-08 1e-07 1.88e-09 4.79e-08