Genes within 1Mb (chr1:46287067:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 795904 eQTL 1.88e-02 -0.0499 0.0212 0.0 0.0 0.149
ENSG00000079277 MKNK1 -329776 eQTL 4.54e-02 -0.0356 0.0178 0.0 0.0 0.149
ENSG00000085998 POMGNT1 66762 eQTL 4.97e-05 -0.0606 0.0149 0.0 0.0 0.149
ENSG00000085999 RAD54L 39379 eQTL 4.75e-02 0.0557 0.028 0.0 0.0 0.149
ENSG00000086015 MAST2 500080 eQTL 2.31e-02 0.0637 0.028 0.0 0.0 0.149
ENSG00000117450 PRDX1 764020 pQTL 3.99e-02 0.0484 0.0235 0.00116 0.0 0.154
ENSG00000117481 NSUN4 -53110 eQTL 7.97e-03 -0.0919 0.0346 0.0 0.0 0.149
ENSG00000123472 ATPAF1 -386800 eQTL 5.24e-04 -0.0957 0.0275 0.0 0.0 0.149
ENSG00000132773 TOE1 947015 eQTL 3.15e-02 0.0406 0.0188 0.0 0.0 0.149
ENSG00000142961 MOB3C -329824 eQTL 2.44e-02 -0.0604 0.0268 0.0 0.0 0.149


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000085998 POMGNT1 66762 1.63e-05 2.41e-05 3.07e-06 1.22e-05 2.54e-06 8.94e-06 2.26e-05 2.93e-06 1.87e-05 8.91e-06 2.42e-05 9.08e-06 3.24e-05 8.5e-06 5.06e-06 1.03e-05 9.2e-06 1.54e-05 4.98e-06 3.86e-06 8.31e-06 1.7e-05 1.59e-05 4.73e-06 2.89e-05 5.33e-06 8.09e-06 7.77e-06 1.61e-05 1.42e-05 1.35e-05 1.23e-06 1.38e-06 4.69e-06 8.5e-06 3.9e-06 2.24e-06 2.72e-06 2.66e-06 2.38e-06 1.2e-06 2.49e-05 2.66e-06 2.36e-07 1.07e-06 2.59e-06 3.24e-06 7.33e-07 4.42e-07
ENSG00000086015 MAST2 500080 1.25e-06 9.44e-07 3.28e-07 6.94e-07 1.64e-07 5.26e-07 1.07e-06 3.45e-07 1.14e-06 3.82e-07 1.22e-06 6.02e-07 1.49e-06 2.55e-07 5.58e-07 6.57e-07 7.76e-07 5.57e-07 4.95e-07 4.52e-07 4.57e-07 9.92e-07 6.18e-07 4.44e-07 1.85e-06 3.17e-07 7.55e-07 6.51e-07 7.07e-07 8.48e-07 5.66e-07 2.06e-07 1.98e-07 6.38e-07 5.32e-07 4.62e-07 5.02e-07 2.24e-07 3.93e-07 3.12e-07 2.57e-07 1.59e-06 1.08e-07 1.81e-08 1.89e-07 1.14e-07 1.93e-07 3.7e-08 6.51e-08
ENSG00000123472 ATPAF1 -386800 1.31e-06 1.55e-06 2.51e-07 1.43e-06 3.91e-07 8.22e-07 1.37e-06 4.23e-07 1.73e-06 6.69e-07 2e-06 1.28e-06 2.6e-06 5.06e-07 4.61e-07 9.77e-07 1.02e-06 1.16e-06 5.81e-07 4.42e-07 6.24e-07 1.98e-06 1.14e-06 6.1e-07 2.39e-06 8.55e-07 1.12e-06 1.05e-06 1.5e-06 1.23e-06 7.6e-07 2.49e-07 3.85e-07 7.02e-07 9.25e-07 8.86e-07 7.5e-07 4.49e-07 7.23e-07 3.46e-07 3.31e-07 2.39e-06 4.16e-07 1.28e-08 2.5e-07 3.28e-07 2.74e-07 2.64e-07 1.68e-07
ENSG00000142961 MOB3C -329824 1.97e-06 2.44e-06 5.96e-07 1.99e-06 4.85e-07 7.79e-07 1.61e-06 6.05e-07 1.8e-06 8.34e-07 1.93e-06 1.44e-06 3.31e-06 1.44e-06 9.62e-07 1.54e-06 9.82e-07 2.12e-06 7.66e-07 9.54e-07 1.21e-06 2.76e-06 1.75e-06 9.37e-07 3.08e-06 1.33e-06 1.49e-06 1.79e-06 1.63e-06 1.47e-06 1.81e-06 4.17e-07 5.66e-07 1.2e-06 1.6e-06 9.86e-07 8.05e-07 4.49e-07 1.33e-06 3.46e-07 1.52e-07 3.36e-06 5.42e-07 5.68e-08 3.55e-07 3.38e-07 5.64e-07 1.98e-07 2.61e-07