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Genes within 1Mb (chr1:46136688:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000070759 TESK2 645525 sc-eQTL 9.62e-01 0.00973 0.206 0.05 CD8_TEM L2
ENSG00000079277 MKNK1 -480155 sc-eQTL 9.30e-01 0.0191 0.216 0.05 CD8_TEM L2
ENSG00000085998 POMGNT1 -83617 sc-eQTL 7.81e-03 0.557 0.207 0.05 CD8_TEM L2
ENSG00000086015 MAST2 349701 sc-eQTL 3.24e-01 0.204 0.206 0.05 CD8_TEM L2
ENSG00000117448 AKR1A1 586145 sc-eQTL 1.48e-01 -0.299 0.206 0.05 CD8_TEM L2
ENSG00000117450 PRDX1 613641 sc-eQTL 6.16e-01 0.0919 0.183 0.05 CD8_TEM L2
ENSG00000117461 PIK3R3 3652 sc-eQTL 6.94e-01 0.0755 0.192 0.05 CD8_TEM L2
ENSG00000117481 NSUN4 -203489 sc-eQTL 3.20e-03 0.614 0.206 0.05 CD8_TEM L2
ENSG00000123472 ATPAF1 -537179 sc-eQTL 8.13e-01 0.0468 0.198 0.05 CD8_TEM L2
ENSG00000132128 LRRC41 -166920 sc-eQTL 2.58e-01 0.228 0.201 0.05 CD8_TEM L2
ENSG00000132773 TOE1 796636 sc-eQTL 3.31e-01 -0.199 0.204 0.05 CD8_TEM L2
ENSG00000132780 NASP 552842 sc-eQTL 3.20e-01 0.152 0.153 0.05 CD8_TEM L2
ENSG00000132781 MUTYH 795795 sc-eQTL 2.41e-01 0.248 0.211 0.05 CD8_TEM L2
ENSG00000142961 MOB3C -480203 sc-eQTL 1.44e-01 0.288 0.196 0.05 CD8_TEM L2
ENSG00000159592 GPBP1L1 448575 sc-eQTL 8.84e-01 0.0319 0.219 0.05 CD8_TEM L2
ENSG00000159596 TMEM69 448507 sc-eQTL 9.53e-01 0.0107 0.182 0.05 CD8_TEM L2
ENSG00000159658 EFCAB14 -582426 sc-eQTL 1.30e-01 0.297 0.195 0.05 CD8_TEM L2
ENSG00000162415 ZSWIM5 830479 sc-eQTL 1.07e-02 -0.532 0.206 0.05 CD8_TEM L2
ENSG00000173660 UQCRH -167010 sc-eQTL 4.80e-01 -0.13 0.184 0.05 CD8_TEM L2
ENSG00000197429 IPP 386035 sc-eQTL 1.65e-01 -0.297 0.213 0.05 CD8_TEM L2
ENSG00000070759 TESK2 645525 sc-eQTL 2.93e-02 0.449 0.204 0.051 cDC L2
ENSG00000079277 MKNK1 -480155 sc-eQTL 4.60e-01 0.14 0.19 0.051 cDC L2
ENSG00000085998 POMGNT1 -83617 sc-eQTL 6.50e-01 0.0954 0.21 0.051 cDC L2
ENSG00000086015 MAST2 349701 sc-eQTL 8.35e-01 0.0389 0.186 0.051 cDC L2
ENSG00000117448 AKR1A1 586145 sc-eQTL 7.05e-01 -0.0754 0.199 0.051 cDC L2
ENSG00000117450 PRDX1 613641 sc-eQTL 2.20e-01 0.181 0.147 0.051 cDC L2
ENSG00000117480 FAAH -257629 sc-eQTL 3.69e-01 -0.185 0.206 0.051 cDC L2
ENSG00000117481 NSUN4 -203489 sc-eQTL 4.62e-02 -0.425 0.212 0.051 cDC L2
ENSG00000123472 ATPAF1 -537179 sc-eQTL 5.48e-01 0.126 0.209 0.051 cDC L2
ENSG00000132128 LRRC41 -166920 sc-eQTL 7.57e-01 -0.0648 0.209 0.051 cDC L2
ENSG00000132773 TOE1 796636 sc-eQTL 5.66e-01 0.13 0.226 0.051 cDC L2
ENSG00000132780 NASP 552842 sc-eQTL 1.48e-01 0.297 0.204 0.051 cDC L2
ENSG00000132781 MUTYH 795795 sc-eQTL 4.02e-01 -0.177 0.21 0.051 cDC L2
ENSG00000142961 MOB3C -480203 sc-eQTL 4.22e-01 0.149 0.185 0.051 cDC L2
ENSG00000159592 GPBP1L1 448575 sc-eQTL 8.59e-01 -0.0377 0.211 0.051 cDC L2
ENSG00000159596 TMEM69 448507 sc-eQTL 4.82e-01 -0.15 0.212 0.051 cDC L2
ENSG00000159658 EFCAB14 -582426 sc-eQTL 4.14e-01 -0.171 0.209 0.051 cDC L2
ENSG00000173660 UQCRH -167010 sc-eQTL 8.72e-01 -0.0214 0.132 0.051 cDC L2
ENSG00000197429 IPP 386035 sc-eQTL 3.89e-01 -0.153 0.177 0.051 cDC L2
ENSG00000070759 TESK2 645525 sc-eQTL 6.59e-02 0.415 0.224 0.051 pDC L2
ENSG00000079277 MKNK1 -480155 sc-eQTL 3.29e-02 -0.481 0.224 0.051 pDC L2
ENSG00000085998 POMGNT1 -83617 sc-eQTL 3.02e-01 -0.192 0.186 0.051 pDC L2
ENSG00000086015 MAST2 349701 sc-eQTL 7.97e-02 -0.322 0.183 0.051 pDC L2
ENSG00000117448 AKR1A1 586145 sc-eQTL 3.16e-01 -0.198 0.197 0.051 pDC L2
ENSG00000117450 PRDX1 613641 sc-eQTL 5.56e-01 0.105 0.177 0.051 pDC L2
ENSG00000117480 FAAH -257629 sc-eQTL 2.20e-01 -0.221 0.179 0.051 pDC L2
ENSG00000117481 NSUN4 -203489 sc-eQTL 8.41e-01 0.0435 0.217 0.051 pDC L2
ENSG00000123472 ATPAF1 -537179 sc-eQTL 2.77e-01 0.254 0.232 0.051 pDC L2
ENSG00000132128 LRRC41 -166920 sc-eQTL 8.74e-01 0.0364 0.23 0.051 pDC L2
ENSG00000132773 TOE1 796636 sc-eQTL 8.09e-01 0.0563 0.232 0.051 pDC L2
ENSG00000132780 NASP 552842 sc-eQTL 4.75e-01 0.133 0.186 0.051 pDC L2
ENSG00000132781 MUTYH 795795 sc-eQTL 4.90e-01 0.14 0.202 0.051 pDC L2
ENSG00000142961 MOB3C -480203 sc-eQTL 9.75e-01 0.0069 0.22 0.051 pDC L2
ENSG00000159592 GPBP1L1 448575 sc-eQTL 1.16e-01 0.349 0.221 0.051 pDC L2
ENSG00000159596 TMEM69 448507 sc-eQTL 2.74e-02 -0.46 0.207 0.051 pDC L2
ENSG00000159658 EFCAB14 -582426 sc-eQTL 7.07e-01 -0.0742 0.197 0.051 pDC L2
ENSG00000173660 UQCRH -167010 sc-eQTL 1.65e-01 -0.246 0.177 0.051 pDC L2
ENSG00000197429 IPP 386035 sc-eQTL 5.18e-01 -0.136 0.21 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000086015 MAST2 349701 eQTL 2.23e-16 0.385 0.0461 0.0 0.0 0.0417
ENSG00000132780 NASP 552842 eQTL 5.25e-09 -0.226 0.0384 0.0 0.0 0.0417
ENSG00000159588 CCDC17 512631 eQTL 4.81e-17 -0.284 0.0332 0.0 0.0 0.0417
ENSG00000159592 GPBP1L1 448575 eQTL 0.0207 0.0599 0.0259 0.0 0.0 0.0417
ENSG00000162415 ZSWIM5 830479 eQTL 0.0389 -0.105 0.0508 0.0 0.0 0.0417
ENSG00000197429 IPP 386038 eQTL 0.0368 -0.103 0.0491 0.0 0.0 0.0417
ENSG00000232022 FAAHP1 -295441 eQTL 0.00282 -0.216 0.0722 0.00144 0.00105 0.0417
ENSG00000234329 AL604028.2 484862 eQTL 0.0215 -0.138 0.06 0.0 0.0 0.0417
ENSG00000281912 LINC01144 832778 eQTL 0.000255 0.297 0.081 0.0 0.0 0.0417

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000086015 MAST2 349701 3.53e-07 4.93e-07 5.35e-08 3.56e-07 9.87e-08 8.85e-08 2.24e-07 5.66e-08 1.86e-07 7.6e-08 1.66e-07 1.2e-07 5.39e-07 8.85e-08 5.69e-08 9.01e-08 6.63e-08 1.8e-07 7.36e-08 8.69e-08 1.22e-07 1.42e-07 1.75e-07 3.51e-08 2.86e-07 1.31e-07 1.17e-07 1.48e-07 1.31e-07 1.05e-07 1.59e-07 3.68e-08 4.16e-08 1.16e-07 1.16e-07 3.22e-08 1.84e-07 8.17e-08 4.17e-08 6.07e-08 6.14e-08 2.65e-07 3.14e-08 5.83e-09 4.67e-08 1.71e-08 1.21e-07 1.9e-09 4.82e-08
ENSG00000117448 \N 586145 2.64e-07 1.27e-07 3.69e-08 1.82e-07 9.65e-08 9.57e-08 1.38e-07 5.35e-08 1.41e-07 4.38e-08 1.6e-07 7.88e-08 1.45e-07 6.38e-08 5.44e-08 7.5e-08 3.88e-08 1.14e-07 5.19e-08 4.07e-08 1.05e-07 1.3e-07 1.26e-07 4.54e-08 1.33e-07 1.19e-07 1.1e-07 9.32e-08 9.88e-08 1.09e-07 9.91e-08 3.71e-08 3.26e-08 8e-08 8.96e-08 3.9e-08 3.91e-08 9.55e-08 6.59e-08 3.77e-08 4.41e-08 1.33e-07 4.14e-08 7.3e-09 8.79e-08 1.69e-08 1.27e-07 4.26e-09 5.04e-08
ENSG00000132780 NASP 552842 2.64e-07 1.35e-07 3.65e-08 1.81e-07 9.02e-08 9.87e-08 1.38e-07 5.35e-08 1.4e-07 4.38e-08 1.59e-07 7.88e-08 1.52e-07 6.56e-08 5.4e-08 7.26e-08 3.9e-08 1.14e-07 5.21e-08 4.45e-08 1.04e-07 1.28e-07 1.32e-07 4.13e-08 1.32e-07 1.19e-07 1.12e-07 9.36e-08 1.02e-07 1.1e-07 9.64e-08 4.07e-08 3.28e-08 8.56e-08 8.76e-08 3.87e-08 5.1e-08 9.65e-08 6.57e-08 3.71e-08 3.95e-08 1.36e-07 4.7e-08 1.54e-08 8.16e-08 1.68e-08 1.26e-07 4.2e-09 4.79e-08
ENSG00000159588 CCDC17 512631 2.69e-07 1.42e-07 3.59e-08 1.89e-07 8.92e-08 9.65e-08 1.44e-07 5.49e-08 1.44e-07 4.4e-08 1.62e-07 7.78e-08 1.69e-07 6.76e-08 5.53e-08 7.17e-08 3.98e-08 1.18e-07 5.39e-08 4.1e-08 1.04e-07 1.27e-07 1.34e-07 4.05e-08 1.4e-07 1.14e-07 1.12e-07 9.65e-08 1.03e-07 1.12e-07 9.92e-08 3.96e-08 3.35e-08 8.89e-08 7.51e-08 3.97e-08 5.45e-08 9.22e-08 6.76e-08 4.19e-08 4.39e-08 1.4e-07 5.22e-08 2.06e-08 7.91e-08 1.66e-08 1.25e-07 4.09e-09 5.09e-08
ENSG00000159592 GPBP1L1 448575 2.67e-07 1.76e-07 3.71e-08 2.26e-07 9.01e-08 9.9e-08 1.61e-07 5.19e-08 1.45e-07 4.74e-08 1.57e-07 8.59e-08 2.24e-07 7.95e-08 6.17e-08 7.53e-08 4.01e-08 1.26e-07 5.97e-08 4.8e-08 1.08e-07 1.27e-07 1.45e-07 3.23e-08 1.63e-07 1.14e-07 1.08e-07 9.92e-08 1.08e-07 1.07e-07 1.07e-07 3.64e-08 4.02e-08 9.52e-08 3.52e-08 3.93e-08 8.87e-08 9.23e-08 6.45e-08 5.13e-08 5.45e-08 1.5e-07 5.12e-08 1.87e-08 6.92e-08 1.83e-08 1.24e-07 3.89e-09 4.94e-08
ENSG00000173660 \N -167010 1.49e-06 2.47e-06 3.05e-07 1.88e-06 2.43e-07 6.68e-07 1.55e-06 3.54e-07 1.75e-06 4.44e-07 1.84e-06 7.04e-07 3.49e-06 8.78e-07 4.95e-07 9.19e-07 1.07e-06 7.94e-07 8.34e-07 5.11e-07 6.51e-07 1.63e-06 9.35e-07 5.61e-07 2.34e-06 5.15e-07 9.15e-07 1.05e-06 1.38e-06 1.2e-06 7.56e-07 3e-07 2.67e-07 8.98e-07 8.76e-07 4.75e-07 7.7e-07 2.38e-07 7.83e-07 4.35e-07 2.8e-07 2.12e-06 3.74e-07 1.38e-07 1.8e-07 1.11e-07 1.9e-07 8.96e-08 5.39e-08
ENSG00000234329 AL604028.2 484862 2.74e-07 1.51e-07 3.56e-08 2.05e-07 8.83e-08 1e-07 1.49e-07 5.33e-08 1.44e-07 4.57e-08 1.6e-07 8.14e-08 1.79e-07 7.37e-08 6e-08 7.37e-08 3.93e-08 1.21e-07 5.82e-08 4.31e-08 1.05e-07 1.26e-07 1.39e-07 3.68e-08 1.46e-07 1.16e-07 1.11e-07 9.61e-08 1.05e-07 1.12e-07 1.02e-07 3.7e-08 3.61e-08 9.78e-08 5.99e-08 3.77e-08 6.57e-08 9.25e-08 6.39e-08 3.67e-08 5.14e-08 1.46e-07 5.2e-08 1.74e-08 7.79e-08 1.83e-08 1.23e-07 3.99e-09 4.85e-08
ENSG00000281912 LINC01144 832778 2.66e-07 1.1e-07 3.28e-08 1.78e-07 1.02e-07 9.13e-08 1.39e-07 5.24e-08 1.37e-07 4.23e-08 1.63e-07 7.6e-08 1.26e-07 6.07e-08 4.89e-08 7.87e-08 5.1e-08 1.06e-07 5.22e-08 3.59e-08 1.03e-07 1.31e-07 1.29e-07 4.99e-08 1.32e-07 1.09e-07 1.11e-07 8.45e-08 1.03e-07 1.1e-07 9.75e-08 3.95e-08 2.74e-08 8.21e-08 9.27e-08 4.19e-08 5.05e-08 9.26e-08 7.92e-08 3.09e-08 3.27e-08 1.36e-07 3.91e-08 1.3e-08 1.09e-07 1.78e-08 1.37e-07 4.6e-09 4.74e-08