Genes within 1Mb (chr1:46130024:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 638861 eQTL 1.03e-17 -0.132 0.0151 0.0 0.0 0.314
ENSG00000079277 MKNK1 -486819 eQTL 8.10e-03 -0.0349 0.0131 0.0 0.0 0.314
ENSG00000086015 MAST2 343037 eQTL 6.91e-27 0.216 0.0196 0.0429 0.0665 0.314
ENSG00000117448 AKR1A1 579481 eQTL 2.15e-02 -0.0273 0.0119 0.0 0.0 0.314
ENSG00000117461 PIK3R3 -3012 eQTL 2.99e-29 0.232 0.0199 0.0 0.0011 0.314
ENSG00000117480 FAAH -264293 eQTL 2.45e-02 0.0503 0.0223 0.0 0.0 0.314
ENSG00000123472 ATPAF1 -543843 eQTL 6.39e-03 -0.0558 0.0204 0.0 0.0 0.314
ENSG00000132780 NASP 546178 eQTL 3.21e-02 -0.0364 0.017 0.0 0.0 0.314
ENSG00000142961 MOB3C -486867 eQTL 4.87e-05 -0.0805 0.0197 0.00158 0.0 0.314
ENSG00000159592 GPBP1L1 441911 eQTL 6.70e-06 0.0506 0.0112 0.0103 0.00982 0.314
ENSG00000159596 TMEM69 441843 eQTL 6.30e-12 0.157 0.0226 0.0 0.0 0.314
ENSG00000159658 EFCAB14 -589090 pQTL 1.16e-02 -0.0429 0.0169 0.0 0.0 0.307
ENSG00000159658 EFCAB14 -589090 eQTL 9.57e-03 -0.0521 0.0201 0.0 0.0 0.314
ENSG00000162415 ZSWIM5 823815 eQTL 8.13e-02 0.0386 0.0221 0.00132 0.0 0.314
ENSG00000197429 IPP 379374 eQTL 1.29e-02 0.0532 0.0214 0.0 0.0 0.314
ENSG00000225447 RPS15AP10 483827 eQTL 1.34e-13 -0.257 0.0343 0.0 0.0 0.314
ENSG00000234329 AL604028.2 478198 eQTL 7.56e-29 -0.283 0.0245 0.0 0.0 0.314
ENSG00000280670 CCDC163 629945 eQTL 2.30e-05 -0.165 0.0388 0.0 0.0 0.314


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 638861 1.26e-06 9.88e-07 3.04e-07 1.25e-06 2.66e-07 4.78e-07 1.15e-06 3.25e-07 1.39e-06 5.15e-07 1.52e-06 5.7e-07 2.19e-06 2.76e-07 5.4e-07 8.25e-07 8.06e-07 5.68e-07 7.76e-07 3.34e-07 3.87e-07 1.17e-06 8.27e-07 5.1e-07 2.26e-06 3.06e-07 9.62e-07 6.46e-07 7.69e-07 1.19e-06 6.73e-07 1.29e-07 5.3e-08 3.66e-07 5.39e-07 4.12e-07 3.12e-07 1.55e-07 2.78e-07 2.65e-07 1.04e-07 1.22e-06 9.66e-08 1.58e-07 2.01e-07 1.11e-07 1.91e-07 6.95e-08 5.25e-08
ENSG00000086015 MAST2 343037 3.62e-06 5e-06 7.29e-07 3.51e-06 1.53e-06 1.55e-06 3.49e-06 9.93e-07 5.08e-06 2.8e-06 5.29e-06 3.21e-06 7.05e-06 2.17e-06 1.35e-06 3.85e-06 1.78e-06 2.89e-06 1.41e-06 1.2e-06 2.62e-06 4.63e-06 3.54e-06 1.65e-06 7.65e-06 1.33e-06 2.28e-06 1.79e-06 3.78e-06 3.62e-06 2.77e-06 4.9e-07 5.29e-07 1.66e-06 2.04e-06 9.23e-07 9.21e-07 4.42e-07 1.08e-06 4.28e-07 1.83e-07 4.71e-06 4.37e-07 4.33e-07 5.01e-07 8.63e-07 7.76e-07 7.5e-07 3.21e-07
ENSG00000117448 AKR1A1 579481 1.28e-06 1.13e-06 2.79e-07 1.62e-06 3.48e-07 5.91e-07 1.63e-06 3.75e-07 1.68e-06 7.1e-07 2.05e-06 6.36e-07 2.61e-06 2.82e-07 4.76e-07 9.51e-07 9.15e-07 6.58e-07 7.2e-07 6.26e-07 6.66e-07 1.72e-06 8.92e-07 6.4e-07 2.41e-06 4.31e-07 1.02e-06 7.19e-07 1.17e-06 1.23e-06 8.27e-07 2.58e-07 1.18e-07 6.38e-07 7.37e-07 4.4e-07 4.75e-07 2.73e-07 4.26e-07 3.02e-07 1.22e-07 1.5e-06 3.01e-07 1.38e-07 2.95e-07 2.14e-07 2.29e-07 1.15e-07 8.44e-08
ENSG00000117461 PIK3R3 -3012 0.000121 9.68e-05 2.1e-05 3.66e-05 2.07e-05 3.8e-05 0.000114 1.67e-05 8.89e-05 5.62e-05 0.000115 4.68e-05 0.00014 4.28e-05 2.49e-05 7.23e-05 5.11e-05 7.78e-05 2.66e-05 2.06e-05 5.08e-05 0.000116 8.56e-05 3.07e-05 0.000133 3.37e-05 5.12e-05 4.25e-05 9.51e-05 5.78e-05 5.97e-05 6.19e-06 9.09e-06 2.25e-05 2.55e-05 1.58e-05 9.07e-06 1.03e-05 1.43e-05 8.86e-06 4.77e-06 9.44e-05 1.2e-05 1.29e-06 7.56e-06 1.36e-05 1.4e-05 6.1e-06 4.26e-06
ENSG00000132128 \N -173584 9.25e-06 1.36e-05 2.23e-06 8.45e-06 2.38e-06 5.07e-06 1.28e-05 2.2e-06 1.15e-05 6.09e-06 1.54e-05 6.06e-06 1.79e-05 4.46e-06 3.46e-06 9e-06 6.38e-06 8.09e-06 2.97e-06 2.91e-06 6.38e-06 1.18e-05 1.02e-05 3.38e-06 2.44e-05 4.62e-06 7.57e-06 4.84e-06 1.1e-05 8.34e-06 7.65e-06 1.03e-06 8.28e-07 2.99e-06 6.01e-06 2.21e-06 1.79e-06 1.96e-06 2.19e-06 9.9e-07 9.82e-07 1.45e-05 1.64e-06 5.28e-07 9.34e-07 1.72e-06 1.75e-06 6.86e-07 4.83e-07
ENSG00000142961 MOB3C -486867 1.28e-06 2.43e-06 3e-07 1.86e-06 4.56e-07 7.87e-07 1.27e-06 3.93e-07 1.7e-06 9.12e-07 1.99e-06 1.2e-06 3.47e-06 1.04e-06 6.94e-07 1.15e-06 9.86e-07 1.16e-06 6.65e-07 5.13e-07 6.39e-07 1.94e-06 1.6e-06 8.04e-07 3.36e-06 9.13e-07 1.26e-06 1.07e-06 1.65e-06 1.59e-06 1.49e-06 3.04e-07 2e-07 5.48e-07 1.27e-06 6.14e-07 7.34e-07 3.71e-07 5.99e-07 2.57e-07 2.8e-07 2.02e-06 4.58e-07 2.52e-07 3.52e-07 2.95e-07 3.2e-07 2.4e-07 2.41e-07
ENSG00000159592 GPBP1L1 441911 1.58e-06 2.75e-06 5.55e-07 2.46e-06 5.12e-07 7.85e-07 1.59e-06 6.11e-07 2.08e-06 1.4e-06 2.55e-06 1.47e-06 3.71e-06 1.42e-06 9.24e-07 1.75e-06 1.34e-06 1.73e-06 1.29e-06 6.46e-07 9.25e-07 2.87e-06 2.13e-06 9.54e-07 4.08e-06 1.21e-06 1.6e-06 1.42e-06 1.63e-06 1.81e-06 1.99e-06 4.71e-07 3.01e-07 8.95e-07 1.84e-06 7.08e-07 7.55e-07 4.38e-07 9.59e-07 3.79e-07 3.03e-07 2.89e-06 6.52e-07 2.91e-07 2.99e-07 4.03e-07 5.13e-07 2.62e-07 2.44e-07
ENSG00000159596 TMEM69 441843 1.58e-06 2.75e-06 5.55e-07 2.46e-06 5.12e-07 7.85e-07 1.61e-06 6.11e-07 2.08e-06 1.4e-06 2.55e-06 1.47e-06 3.71e-06 1.42e-06 9.24e-07 1.73e-06 1.34e-06 1.73e-06 1.29e-06 6.46e-07 9.25e-07 2.87e-06 2.13e-06 9.54e-07 4.08e-06 1.21e-06 1.6e-06 1.42e-06 1.63e-06 1.81e-06 1.99e-06 4.71e-07 3.01e-07 8.95e-07 1.84e-06 7.08e-07 7.55e-07 4.38e-07 9.59e-07 3.79e-07 3.04e-07 2.89e-06 6.52e-07 2.91e-07 2.99e-07 4.03e-07 5.13e-07 2.62e-07 2.44e-07
ENSG00000159658 EFCAB14 -589090 1.26e-06 1.07e-06 2.84e-07 1.57e-06 3.44e-07 6.06e-07 1.6e-06 3.44e-07 1.5e-06 6.61e-07 1.85e-06 6.02e-07 2.49e-06 2.59e-07 4.89e-07 9.78e-07 9.15e-07 6.45e-07 8.04e-07 5.33e-07 6.13e-07 1.59e-06 8.37e-07 6.47e-07 2.47e-06 4.33e-07 1.03e-06 7.03e-07 1.04e-06 1.27e-06 8.1e-07 2.39e-07 1.05e-07 5.64e-07 6.8e-07 4.5e-07 4.61e-07 2.44e-07 4.04e-07 2.96e-07 1.39e-07 1.59e-06 2.33e-07 1.33e-07 2.16e-07 2.32e-07 2.22e-07 6.08e-08 9.42e-08
ENSG00000225447 RPS15AP10 483827 1.3e-06 2.51e-06 3.2e-07 1.88e-06 4.49e-07 8.22e-07 1.3e-06 4.25e-07 1.7e-06 9.51e-07 1.97e-06 1.26e-06 3.49e-06 1.12e-06 6.98e-07 1.18e-06 1.03e-06 1.2e-06 6.58e-07 4.74e-07 6.18e-07 1.94e-06 1.68e-06 8.29e-07 3.42e-06 9.37e-07 1.31e-06 1.05e-06 1.63e-06 1.68e-06 1.55e-06 3.05e-07 2.02e-07 5.53e-07 1.26e-06 6.33e-07 7.4e-07 4.02e-07 6.21e-07 2.58e-07 2.56e-07 2.12e-06 5.1e-07 2.62e-07 3.67e-07 2.98e-07 3.36e-07 2.42e-07 2.44e-07
ENSG00000234329 AL604028.2 478198 1.28e-06 2.61e-06 3.23e-07 2.02e-06 4.43e-07 7.77e-07 1.29e-06 4.17e-07 1.74e-06 1e-06 2.05e-06 1.3e-06 3.53e-06 1.15e-06 8.27e-07 1.31e-06 1.09e-06 1.29e-06 6.96e-07 4.38e-07 6.57e-07 2.06e-06 1.71e-06 8.71e-07 3.4e-06 9.6e-07 1.34e-06 1.07e-06 1.64e-06 1.61e-06 1.71e-06 3.4e-07 2.3e-07 5.91e-07 1.35e-06 6.12e-07 7.02e-07 3.92e-07 6.91e-07 3.46e-07 2.59e-07 2.12e-06 5e-07 2.71e-07 3.98e-07 3.31e-07 3.8e-07 2.45e-07 2.6e-07
ENSG00000280670 CCDC163 629945 1.31e-06 9.28e-07 2.63e-07 1.3e-06 2.76e-07 4.92e-07 1.22e-06 3.46e-07 1.44e-06 6.14e-07 1.67e-06 5.57e-07 2.27e-06 3.07e-07 5.65e-07 8.22e-07 8.54e-07 5.63e-07 8.01e-07 3.72e-07 3.99e-07 1.22e-06 8.96e-07 5.84e-07 2.19e-06 3.47e-07 9.45e-07 7.22e-07 8.24e-07 1.22e-06 7.26e-07 1.55e-07 4.77e-08 4.16e-07 5.64e-07 4.34e-07 3.4e-07 1.68e-07 2.95e-07 3.21e-07 1.16e-07 1.29e-06 1.1e-07 1.61e-07 1.73e-07 1.35e-07 1.88e-07 5.35e-08 4.96e-08