Genes within 1Mb (chr1:46079096:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 587933 eQTL 6.49e-20 -0.136 0.0145 0.0 0.0 0.38
ENSG00000079277 MKNK1 -537747 eQTL 1.80e-03 -0.0396 0.0126 0.0 0.0 0.38
ENSG00000086015 MAST2 292109 eQTL 4.22e-09 0.117 0.0197 0.0 0.0 0.38
ENSG00000117461 PIK3R3 -53940 eQTL 2.12e-34 0.242 0.019 0.0159 0.016 0.38
ENSG00000117481 NSUN4 -261081 eQTL 1.95e-03 -0.0765 0.0246 0.0 0.0 0.38
ENSG00000123472 ATPAF1 -594771 eQTL 8.23e-04 -0.0659 0.0196 0.0 0.0 0.38
ENSG00000142961 MOB3C -537795 eQTL 3.58e-04 -0.0683 0.0191 0.0 0.0 0.38
ENSG00000159588 CCDC17 455039 eQTL 2.28e-14 0.109 0.014 0.0 0.0 0.38
ENSG00000159592 GPBP1L1 390983 eQTL 3.80e-03 0.0314 0.0108 0.0 0.0 0.38
ENSG00000159596 TMEM69 390915 eQTL 1.21e-09 0.135 0.0219 0.0 0.0 0.38
ENSG00000159658 EFCAB14 -640018 pQTL 1.86e-03 -0.0504 0.0162 0.00112 0.0 0.371
ENSG00000162415 ZSWIM5 772887 eQTL 2.42e-02 0.0481 0.0213 0.0011 0.0 0.38
ENSG00000197429 IPP 328446 eQTL 5.19e-04 0.0715 0.0205 0.00127 0.0 0.38
ENSG00000225447 RPS15AP10 432899 eQTL 3.67e-08 -0.186 0.0335 0.0 0.0 0.38
ENSG00000230896 AL604028.1 382021 eQTL 3.89e-02 0.0794 0.0384 0.0 0.0 0.38
ENSG00000234329 AL604028.2 427270 eQTL 1.09e-23 -0.247 0.024 0.0 0.0 0.38
ENSG00000280670 CCDC163 579017 eQTL 1.96e-05 -0.161 0.0374 0.0 0.0 0.38


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 587933 2.95e-07 1.56e-07 5.64e-08 2.26e-07 1.03e-07 8.37e-08 1.81e-07 5.62e-08 1.5e-07 6.75e-08 1.62e-07 1.19e-07 2.13e-07 8.07e-08 5.36e-08 7.97e-08 4.18e-08 1.64e-07 7.09e-08 5.87e-08 1.22e-07 1.39e-07 1.62e-07 3.22e-08 1.85e-07 1.26e-07 1.12e-07 1.12e-07 1.24e-07 1.06e-07 1.09e-07 3.99e-08 3.46e-08 9.08e-08 5.24e-08 2.85e-08 5.45e-08 7.61e-08 5.95e-08 7.04e-08 4.78e-08 1.59e-07 5.27e-08 1.1e-08 3.32e-08 1.19e-08 1.15e-07 2.1e-09 4.81e-08
ENSG00000079277 MKNK1 -537747 3.1e-07 1.78e-07 5.91e-08 2.49e-07 1.01e-07 7.75e-08 2.1e-07 5.78e-08 1.66e-07 8.53e-08 1.76e-07 1.31e-07 2.45e-07 8.55e-08 6.27e-08 8.71e-08 4.63e-08 1.8e-07 7.29e-08 6.29e-08 1.26e-07 1.65e-07 1.68e-07 3.51e-08 2.17e-07 1.43e-07 1.2e-07 1.36e-07 1.31e-07 1.33e-07 1.26e-07 3.9e-08 3.8e-08 1.02e-07 7.44e-08 3.3e-08 6.77e-08 6.98e-08 4.9e-08 8.61e-08 4.07e-08 1.62e-07 3.99e-08 1.43e-08 3.3e-08 6.68e-09 8.74e-08 0.0 4.69e-08
ENSG00000086015 MAST2 292109 1.25e-06 9.01e-07 1.6e-07 4.84e-07 1.18e-07 3.36e-07 7.1e-07 2.7e-07 8.08e-07 3.12e-07 1.12e-06 5.51e-07 1.48e-06 2.29e-07 4.26e-07 4.11e-07 7.22e-07 5.16e-07 3.5e-07 4.12e-07 2.38e-07 5.86e-07 5.67e-07 3.27e-07 1.54e-06 2.37e-07 4.9e-07 4.94e-07 6.19e-07 9.11e-07 4.55e-07 4.06e-08 1.36e-07 3.03e-07 3.84e-07 3.02e-07 4.49e-07 1.41e-07 1.5e-07 6.46e-08 2.44e-07 1.23e-06 6.44e-08 5.89e-09 1.87e-07 4.53e-08 1.21e-07 8.08e-08 5.95e-08
ENSG00000117461 PIK3R3 -53940 7.46e-06 9.3e-06 9.73e-07 3.92e-06 1.94e-06 3.4e-06 9.71e-06 1.44e-06 5.77e-06 4.1e-06 9.93e-06 4.59e-06 1.15e-05 3.8e-06 2.01e-06 5.5e-06 3.69e-06 4.31e-06 2.11e-06 2.15e-06 3.43e-06 7.66e-06 6.68e-06 2.36e-06 1.13e-05 2.57e-06 3.63e-06 2.5e-06 6.99e-06 7.71e-06 4.12e-06 5.11e-07 8.85e-07 2.67e-06 2.82e-06 2.12e-06 1.4e-06 1.03e-06 1.42e-06 8.61e-07 7.83e-07 1.06e-05 8.97e-07 1.46e-07 7.96e-07 1.02e-06 9.45e-07 6.26e-07 5.73e-07
ENSG00000132128 \N -224512 1.26e-06 1.13e-06 3.22e-07 1.26e-06 3.51e-07 5.88e-07 1.58e-06 3.41e-07 1.39e-06 4.19e-07 1.86e-06 7.04e-07 2.34e-06 2.92e-07 5.5e-07 8.62e-07 9.2e-07 6.91e-07 7.4e-07 6.43e-07 6.12e-07 1.56e-06 8.66e-07 6.35e-07 2.27e-06 4.17e-07 8.68e-07 7.51e-07 1.24e-06 1.32e-06 6.68e-07 1.55e-07 2.5e-07 6.76e-07 5.34e-07 4.47e-07 6.86e-07 2.38e-07 4.74e-07 2.96e-07 2.88e-07 1.62e-06 9.42e-08 4.15e-08 1.54e-07 1.25e-07 2.33e-07 7e-08 9.5e-08
ENSG00000142961 MOB3C -537795 3.1e-07 1.78e-07 5.91e-08 2.49e-07 1.01e-07 7.75e-08 2.1e-07 5.78e-08 1.66e-07 8.53e-08 1.76e-07 1.31e-07 2.45e-07 8.55e-08 6.27e-08 8.71e-08 4.63e-08 1.8e-07 7.29e-08 6.29e-08 1.26e-07 1.65e-07 1.68e-07 3.51e-08 2.17e-07 1.43e-07 1.2e-07 1.36e-07 1.31e-07 1.33e-07 1.26e-07 3.9e-08 3.8e-08 1.02e-07 7.44e-08 3.3e-08 6.77e-08 6.98e-08 4.9e-08 8.61e-08 4.07e-08 1.62e-07 3.99e-08 1.43e-08 3.3e-08 6.68e-09 8.74e-08 0.0 4.69e-08
ENSG00000159588 CCDC17 455039 4.37e-07 3.12e-07 6.57e-08 3.19e-07 1.07e-07 1.26e-07 3.11e-07 7.52e-08 2.01e-07 1.15e-07 2.68e-07 1.91e-07 4.11e-07 9.18e-08 1.01e-07 1.14e-07 8.53e-08 2.66e-07 9.19e-08 7.84e-08 1.35e-07 2.15e-07 2.11e-07 4.81e-08 3.27e-07 1.86e-07 1.37e-07 1.69e-07 1.48e-07 2.01e-07 1.71e-07 4.78e-08 5.17e-08 1.21e-07 1.97e-07 5.05e-08 1.15e-07 6.1e-08 5.28e-08 6.05e-08 5.38e-08 2.72e-07 3.46e-08 1.54e-08 6.21e-08 8.59e-09 7.8e-08 2.85e-09 4.55e-08
ENSG00000159596 TMEM69 390915 7.3e-07 5.33e-07 7.97e-08 3.99e-07 1.07e-07 1.74e-07 4.25e-07 9.69e-08 2.78e-07 1.78e-07 4.88e-07 3.11e-07 6.77e-07 1.23e-07 1.71e-07 1.75e-07 2.11e-07 3.39e-07 1.62e-07 1.39e-07 1.91e-07 2.99e-07 3.03e-07 1.17e-07 5.75e-07 2.36e-07 2.08e-07 2.44e-07 2.31e-07 4.1e-07 2.31e-07 8.25e-08 5.6e-08 1.39e-07 3.4e-07 8.17e-08 1.23e-07 7.53e-08 6.41e-08 2.83e-08 1.01e-07 4.55e-07 1.67e-08 1.77e-08 1.1e-07 1.88e-08 1.05e-07 1.15e-08 5.49e-08
ENSG00000159658 EFCAB14 -640018 2.8e-07 1.42e-07 4.98e-08 2.24e-07 9.87e-08 8.33e-08 1.6e-07 5.66e-08 1.45e-07 6.08e-08 1.73e-07 1.08e-07 1.79e-07 7.95e-08 5.82e-08 7.23e-08 4.18e-08 1.44e-07 6.92e-08 5.07e-08 1.25e-07 1.25e-07 1.5e-07 2.87e-08 1.65e-07 1.22e-07 1.13e-07 1.06e-07 1.23e-07 1e-07 1.08e-07 2.96e-08 3.68e-08 9.76e-08 3.57e-08 3.22e-08 5.1e-08 8.51e-08 6.49e-08 6.19e-08 4.92e-08 1.48e-07 5.27e-08 7.66e-09 3.2e-08 1.65e-08 1.21e-07 1.98e-09 5e-08
ENSG00000162415 ZSWIM5 772887 2.74e-07 1.3e-07 3.88e-08 1.89e-07 9.25e-08 9.76e-08 1.44e-07 5.4e-08 1.44e-07 4.74e-08 1.57e-07 8.55e-08 1.47e-07 7.13e-08 6.04e-08 7.3e-08 3.93e-08 1.26e-07 5.75e-08 4.31e-08 1.13e-07 1.28e-07 1.39e-07 3.49e-08 1.4e-07 1.14e-07 1.06e-07 9.74e-08 1.08e-07 1.02e-07 9.7e-08 3.64e-08 3.66e-08 8.23e-08 4.84e-08 3.49e-08 5.51e-08 8.71e-08 6.71e-08 3.6e-08 5.44e-08 1.33e-07 5.27e-08 1.09e-08 4.67e-08 1.84e-08 1.19e-07 1.88e-09 4.94e-08
ENSG00000197429 IPP 328446 1.04e-06 8.47e-07 1.12e-07 3.16e-07 1.05e-07 3.15e-07 6.06e-07 1.65e-07 5.49e-07 2.62e-07 9.47e-07 4.62e-07 1.05e-06 1.84e-07 3.16e-07 2.85e-07 5.27e-07 4.16e-07 2.57e-07 2.27e-07 2.48e-07 4.81e-07 4.08e-07 2.22e-07 1.06e-06 2.57e-07 3.37e-07 3.78e-07 4.15e-07 7.39e-07 3.66e-07 6.7e-08 5.89e-08 1.93e-07 3.26e-07 1.55e-07 2.96e-07 1.13e-07 1.11e-07 1.86e-08 1.45e-07 7.54e-07 4.65e-08 1.05e-08 1.6e-07 2.07e-08 1.01e-07 3.13e-08 4.71e-08
ENSG00000225447 RPS15AP10 432899 5.37e-07 3.55e-07 7.16e-08 3.48e-07 1.09e-07 1.5e-07 3.42e-07 8.11e-08 2.35e-07 1.37e-07 3.32e-07 2.11e-07 4.88e-07 1.01e-07 1.24e-07 1.26e-07 1.01e-07 2.87e-07 9.97e-08 8.11e-08 1.59e-07 2.3e-07 2.33e-07 6.52e-08 3.98e-07 2e-07 1.57e-07 1.86e-07 1.58e-07 2.52e-07 1.86e-07 5.22e-08 5.75e-08 1.21e-07 2.58e-07 5.2e-08 1.11e-07 6.67e-08 3.82e-08 3.58e-08 8.02e-08 3.26e-07 3.09e-08 1.99e-08 7.89e-08 9.31e-09 9.1e-08 3.09e-09 4.61e-08
ENSG00000234329 AL604028.2 427270 5.59e-07 3.77e-07 7.45e-08 3.48e-07 1.07e-07 1.54e-07 3.44e-07 7.79e-08 2.38e-07 1.39e-07 3.47e-07 2.22e-07 5.09e-07 1.01e-07 1.26e-07 1.33e-07 1.18e-07 2.9e-07 1.13e-07 8.86e-08 1.6e-07 2.45e-07 2.48e-07 6.65e-08 4.11e-07 2.01e-07 1.72e-07 1.88e-07 1.6e-07 2.59e-07 1.88e-07 5.38e-08 5.55e-08 1.17e-07 2.7e-07 5.7e-08 1.06e-07 6.89e-08 4.44e-08 3.05e-08 8.15e-08 3.27e-07 3.19e-08 2.03e-08 8.45e-08 9.49e-09 9.26e-08 3.14e-09 4.68e-08
ENSG00000280670 CCDC163 579017 3.02e-07 1.59e-07 5.72e-08 2.28e-07 9.82e-08 8.37e-08 1.81e-07 5.62e-08 1.5e-07 6.75e-08 1.63e-07 1.2e-07 2.24e-07 8.07e-08 5.36e-08 7.89e-08 4.31e-08 1.64e-07 7.09e-08 5.75e-08 1.22e-07 1.42e-07 1.62e-07 3.07e-08 1.98e-07 1.31e-07 1.17e-07 1.17e-07 1.26e-07 1.05e-07 1.09e-07 3.55e-08 3.56e-08 9.3e-08 5.41e-08 2.68e-08 5.62e-08 7.49e-08 5.78e-08 7.65e-08 4.89e-08 1.55e-07 4.87e-08 1.09e-08 3.55e-08 1.01e-08 1.11e-07 2.13e-09 4.81e-08