Genes within 1Mb (chr1:46008130:A:G):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 516967 eQTL 2.57e-17 0.133 0.0154 0.0 0.0 0.305
ENSG00000079277 MKNK1 -608713 eQTL 4.48e-02 0.0268 0.0133 0.0 0.0 0.305
ENSG00000086015 MAST2 221143 eQTL 7.69e-25 -0.211 0.0199 0.0 0.0 0.305
ENSG00000117448 AKR1A1 457587 eQTL 3.07e-02 0.026 0.012 0.0 0.0 0.305
ENSG00000117461 PIK3R3 -124906 eQTL 2.94e-28 -0.231 0.0203 0.0 0.0 0.305
ENSG00000117480 FAAH -386187 eQTL 4.40e-02 -0.0457 0.0226 0.0 0.0 0.305
ENSG00000123472 ATPAF1 -665737 eQTL 9.52e-03 0.0537 0.0207 0.0 0.0 0.305
ENSG00000132763 MMACHC 507830 eQTL 4.75e-02 0.0647 0.0326 0.0 0.0 0.305
ENSG00000142961 MOB3C -608761 eQTL 2.74e-04 0.0731 0.02 0.00118 0.0 0.305
ENSG00000159588 CCDC17 384073 eQTL 4.11e-02 -0.031 0.0151 0.0 0.0 0.305
ENSG00000159592 GPBP1L1 320017 eQTL 2.69e-05 -0.0478 0.0113 0.00307 0.00257 0.305
ENSG00000159596 TMEM69 319949 eQTL 1.41e-12 -0.164 0.0229 0.0 0.0 0.305
ENSG00000159658 EFCAB14 -710984 pQTL 5.28e-03 0.0476 0.0171 0.0 0.0 0.3
ENSG00000159658 EFCAB14 -710984 eQTL 3.16e-02 0.0438 0.0204 0.0 0.0 0.305
ENSG00000197429 IPP 257480 eQTL 3.66e-03 -0.063 0.0216 0.0 0.0 0.305
ENSG00000225447 RPS15AP10 361933 eQTL 5.73e-14 0.265 0.0347 0.0 0.0 0.305
ENSG00000234329 AL604028.2 356304 eQTL 1.27e-32 0.304 0.0246 0.0 0.0 0.305
ENSG00000280670 CCDC163 508051 eQTL 7.78e-06 0.177 0.0393 0.0 0.0 0.305
ENSG00000281912 LINC01144 704220 eQTL 4.58e-02 -0.0718 0.0359 0.0 0.0 0.305


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 516967 8.43e-07 4.93e-07 1.05e-07 3.58e-07 9.72e-08 1.74e-07 5.13e-07 9.91e-08 3.66e-07 2.16e-07 5.58e-07 3.48e-07 7.02e-07 1.1e-07 1.9e-07 2.05e-07 2.25e-07 3.79e-07 1.69e-07 1.17e-07 1.91e-07 3.15e-07 3.03e-07 1.23e-07 6.87e-07 2.4e-07 2.58e-07 2.44e-07 3.27e-07 3.8e-07 2.73e-07 7.33e-08 4.74e-08 1.23e-07 2.84e-07 6.83e-08 1.05e-07 7.98e-08 4.04e-08 5.32e-08 8.81e-08 3.85e-07 1.65e-08 2e-08 1.15e-07 1.95e-08 8.75e-08 3.2e-09 5.43e-08
ENSG00000086015 MAST2 221143 2.11e-06 2.42e-06 2.31e-07 1.43e-06 4.58e-07 7.68e-07 1.32e-06 4.44e-07 1.78e-06 7.38e-07 1.93e-06 1.45e-06 3.28e-06 8.7e-07 5.05e-07 1.22e-06 1.03e-06 1.51e-06 6.25e-07 7.55e-07 6.36e-07 2.06e-06 1.68e-06 9.76e-07 2.69e-06 1.26e-06 1.17e-06 1.26e-06 1.69e-06 1.67e-06 1.07e-06 2.83e-07 4.76e-07 9.6e-07 9.62e-07 6.2e-07 7.01e-07 3.82e-07 6.42e-07 1.71e-07 1.83e-07 2.7e-06 4.15e-07 2.15e-07 3.87e-07 2.95e-07 4.03e-07 2.6e-07 2.4e-07
ENSG00000117448 AKR1A1 457587 1.05e-06 6.56e-07 1.22e-07 4.04e-07 1.12e-07 2.64e-07 6.02e-07 1.55e-07 5.74e-07 2.81e-07 9.07e-07 4.43e-07 9.77e-07 1.6e-07 3.1e-07 2.89e-07 4.3e-07 4.16e-07 2.6e-07 1.76e-07 2.17e-07 4.38e-07 3.84e-07 1.91e-07 1.13e-06 2.49e-07 3.93e-07 3.18e-07 4.63e-07 6.27e-07 3.66e-07 6.92e-08 4.77e-08 1.73e-07 3.52e-07 1.21e-07 1.09e-07 1.06e-07 6.41e-08 2.24e-08 1.14e-07 5.96e-07 4.18e-08 5.77e-09 1.67e-07 1.48e-08 1.21e-07 1.28e-08 6.17e-08
ENSG00000117461 PIK3R3 -124906 4.48e-06 4.89e-06 7.32e-07 2.65e-06 1.64e-06 1.63e-06 4.36e-06 9.78e-07 4.98e-06 2.39e-06 5.32e-06 3.37e-06 7.25e-06 2.31e-06 1.33e-06 3.64e-06 2.05e-06 3.49e-06 1.55e-06 1.09e-06 2.96e-06 4.87e-06 4e-06 1.34e-06 6.47e-06 1.93e-06 2.49e-06 1.78e-06 4.44e-06 4.28e-06 2.83e-06 5.08e-07 5.04e-07 1.54e-06 2.19e-06 9.71e-07 1.07e-06 4.58e-07 9.46e-07 4.73e-07 6.55e-07 5.55e-06 3.83e-07 1.59e-07 6.1e-07 9.32e-07 1.01e-06 5.36e-07 4.54e-07
ENSG00000142961 MOB3C -608761 5.59e-07 2.56e-07 7.92e-08 2.44e-07 1.05e-07 1.25e-07 3.44e-07 7.56e-08 2.38e-07 1.46e-07 2.98e-07 2.09e-07 4.27e-07 8.55e-08 1.01e-07 1.33e-07 8.53e-08 2.87e-07 8.93e-08 8.31e-08 1.33e-07 2.24e-07 2.04e-07 4.91e-08 3.98e-07 2.07e-07 1.74e-07 1.7e-07 1.87e-07 1.89e-07 1.86e-07 5.38e-08 4.93e-08 1.01e-07 1.22e-07 4.95e-08 6.29e-08 5.8e-08 4.9e-08 8.3e-08 2.95e-08 2.41e-07 3.65e-08 2.07e-08 7.93e-08 8.59e-09 9.1e-08 0.0 4.66e-08
ENSG00000159592 GPBP1L1 320017 1.24e-06 9.47e-07 3.43e-07 6.97e-07 3.17e-07 4.81e-07 1.41e-06 3.34e-07 1.38e-06 4.31e-07 1.57e-06 6.31e-07 2.02e-06 2.67e-07 5.5e-07 8.48e-07 8.13e-07 6.5e-07 7.02e-07 6.99e-07 4.57e-07 1.28e-06 9.22e-07 6.42e-07 2.25e-06 4.17e-07 8.68e-07 7.14e-07 1.28e-06 1.22e-06 6.76e-07 1.55e-07 2.19e-07 6.53e-07 5.2e-07 4.74e-07 5.17e-07 1.65e-07 3.2e-07 2.49e-07 2.82e-07 1.53e-06 5.73e-08 8.04e-08 1.66e-07 1.28e-07 2.45e-07 8.93e-08 1.16e-07
ENSG00000159596 TMEM69 319949 1.24e-06 9.47e-07 3.43e-07 6.97e-07 3.17e-07 4.81e-07 1.41e-06 3.34e-07 1.38e-06 4.31e-07 1.57e-06 6.31e-07 2.02e-06 2.67e-07 5.5e-07 8.48e-07 8.13e-07 6.5e-07 7.02e-07 6.99e-07 4.57e-07 1.28e-06 9.22e-07 6.42e-07 2.25e-06 4.17e-07 8.68e-07 7.14e-07 1.28e-06 1.22e-06 6.76e-07 1.55e-07 2.19e-07 6.53e-07 5.2e-07 4.74e-07 5.17e-07 1.65e-07 3.2e-07 2.5e-07 2.82e-07 1.53e-06 5.77e-08 8.04e-08 1.66e-07 1.28e-07 2.45e-07 8.93e-08 1.16e-07
ENSG00000159658 EFCAB14 -710984 3.62e-07 1.67e-07 6.57e-08 2.24e-07 1.05e-07 7.75e-08 2.5e-07 5.78e-08 1.86e-07 1.05e-07 1.86e-07 1.48e-07 2.55e-07 8.15e-08 6.2e-08 9.48e-08 5.27e-08 2.15e-07 7.29e-08 6.16e-08 1.18e-07 1.76e-07 1.68e-07 3.59e-08 2.48e-07 1.65e-07 1.25e-07 1.36e-07 1.37e-07 1.24e-07 1.27e-07 4.77e-08 4.16e-08 9.3e-08 5.16e-08 3.05e-08 4.47e-08 7.63e-08 6.35e-08 6.55e-08 5.39e-08 1.59e-07 4.17e-08 7.23e-09 3.61e-08 6.68e-09 7.83e-08 2.02e-09 4.72e-08
ENSG00000225447 RPS15AP10 361933 1.25e-06 9.35e-07 2.95e-07 3.63e-07 2.28e-07 4.23e-07 1.02e-06 3.2e-07 1.12e-06 3.89e-07 1.36e-06 5.57e-07 1.63e-06 2.57e-07 4.28e-07 6.57e-07 7.7e-07 5.54e-07 4.49e-07 4.48e-07 3.07e-07 9.64e-07 6.63e-07 4.87e-07 1.92e-06 3.28e-07 6.18e-07 5.63e-07 9.32e-07 9.93e-07 5.3e-07 3.87e-08 1.95e-07 3.78e-07 3.52e-07 3.35e-07 3.62e-07 1.56e-07 1.34e-07 4.28e-08 2.84e-07 1.22e-06 5.6e-08 4.12e-08 1.92e-07 7.57e-08 1.9e-07 8.74e-08 9.42e-08
ENSG00000234329 AL604028.2 356304 1.34e-06 9.37e-07 2.93e-07 4.19e-07 2.43e-07 4.35e-07 1.08e-06 3.45e-07 1.13e-06 3.76e-07 1.35e-06 5.81e-07 1.67e-06 2.61e-07 4.4e-07 6.7e-07 7.73e-07 5.8e-07 4.65e-07 4.68e-07 3.35e-07 9.67e-07 7.08e-07 5.53e-07 1.94e-06 3.66e-07 6.75e-07 5.67e-07 9.65e-07 1.02e-06 5.47e-07 4.87e-08 2.31e-07 4.29e-07 4.08e-07 3.16e-07 4e-07 1.5e-07 1.38e-07 8.76e-08 3e-07 1.29e-06 6.53e-08 4.15e-08 1.81e-07 7.77e-08 1.71e-07 8.97e-08 8.28e-08
ENSG00000280670 CCDC163 508051 8.35e-07 4.97e-07 9.89e-08 3.48e-07 9.26e-08 1.85e-07 5.2e-07 1.03e-07 3.94e-07 2.28e-07 5.93e-07 3.61e-07 7.36e-07 1.1e-07 2.15e-07 2.18e-07 2.48e-07 3.82e-07 1.77e-07 1.28e-07 1.89e-07 3.34e-07 3.04e-07 1.29e-07 7.42e-07 2.55e-07 2.56e-07 2.54e-07 3.58e-07 4.27e-07 2.93e-07 7.5e-08 4.42e-08 1.37e-07 3e-07 7.92e-08 1.15e-07 8.21e-08 4.17e-08 3.05e-08 9.84e-08 4.04e-07 1.7e-08 1.53e-08 1.23e-07 1.61e-08 7.25e-08 3.3e-09 4.97e-08