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Genes within 1Mb (chr1:45972044:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000070759 TESK2 480881 sc-eQTL 3.13e-01 0.218 0.215 0.059 PB L2
ENSG00000070785 EIF2B3 985322 sc-eQTL 6.36e-01 -0.0872 0.184 0.059 PB L2
ENSG00000079277 MKNK1 -644799 sc-eQTL 7.69e-01 0.0689 0.235 0.059 PB L2
ENSG00000085998 POMGNT1 -248261 sc-eQTL 2.09e-01 0.278 0.22 0.059 PB L2
ENSG00000086015 MAST2 185057 sc-eQTL 1.14e-01 0.363 0.228 0.059 PB L2
ENSG00000117448 AKR1A1 421501 sc-eQTL 4.62e-01 -0.0878 0.119 0.059 PB L2
ENSG00000117450 PRDX1 448997 sc-eQTL 1.88e-01 -0.141 0.107 0.059 PB L2
ENSG00000117481 NSUN4 -368133 sc-eQTL 5.88e-01 -0.137 0.253 0.059 PB L2
ENSG00000123472 ATPAF1 -701823 sc-eQTL 6.43e-01 0.0731 0.157 0.059 PB L2
ENSG00000126088 UROD 961094 sc-eQTL 2.99e-01 -0.167 0.16 0.059 PB L2
ENSG00000126107 HECTD3 960720 sc-eQTL 7.99e-01 -0.0455 0.178 0.059 PB L2
ENSG00000132128 LRRC41 -331564 sc-eQTL 2.26e-01 0.245 0.201 0.059 PB L2
ENSG00000132773 TOE1 631992 sc-eQTL 8.61e-01 0.0401 0.229 0.059 PB L2
ENSG00000132780 NASP 388198 sc-eQTL 9.19e-01 -0.0244 0.239 0.059 PB L2
ENSG00000132781 MUTYH 631151 sc-eQTL 8.19e-01 0.0574 0.25 0.059 PB L2
ENSG00000142961 MOB3C -644847 sc-eQTL 9.47e-01 0.0141 0.212 0.059 PB L2
ENSG00000159592 GPBP1L1 283931 sc-eQTL 5.46e-01 0.149 0.247 0.059 PB L2
ENSG00000159596 TMEM69 283863 sc-eQTL 5.12e-01 0.136 0.206 0.059 PB L2
ENSG00000159658 EFCAB14 -747070 sc-eQTL 2.45e-01 0.237 0.203 0.059 PB L2
ENSG00000173660 UQCRH -331654 sc-eQTL 7.96e-01 0.0324 0.125 0.059 PB L2
ENSG00000197429 IPP 221391 sc-eQTL 9.19e-01 0.024 0.234 0.059 PB L2
ENSG00000280670 CCDC163 471965 sc-eQTL 5.67e-01 -0.106 0.185 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 480881 eQTL 0.0385 -0.0777 0.0375 0.0 0.0 0.0437
ENSG00000079277 MKNK1 -644799 eQTL 0.000981 0.103 0.0313 0.0 0.0 0.0437
ENSG00000085998 POMGNT1 -248261 eQTL 0.0133 -0.0655 0.0264 0.0 0.0 0.0437
ENSG00000117472 TSPAN1 -203029 pQTL 0.0193 0.151 0.0646 0.0 0.0 0.0444
ENSG00000142961 MOB3C -644847 eQTL 0.00627 0.13 0.0473 0.0 0.0 0.0437
ENSG00000159588 CCDC17 347987 eQTL 0.000981 0.118 0.0355 0.00113 0.0 0.0437
ENSG00000280670 CCDC163 471965 eQTL 0.469 0.0678 0.0935 0.00107 0.0 0.0437

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 480881 1.17e-06 9.45e-07 1.85e-07 3.55e-07 1.07e-07 3.22e-07 7.32e-07 2.47e-07 7.15e-07 3.16e-07 1.13e-06 5.53e-07 1.23e-06 2.05e-07 3.31e-07 3.68e-07 6.15e-07 4.52e-07 3.43e-07 3.31e-07 2.42e-07 5.5e-07 4.77e-07 3.27e-07 1.64e-06 2.56e-07 5.04e-07 3.51e-07 5.9e-07 9.21e-07 4.48e-07 3.75e-08 4.62e-08 2.29e-07 3.35e-07 1.94e-07 1.89e-07 1.36e-07 1.01e-07 8.85e-09 1.17e-07 9.14e-07 6.04e-08 1.93e-08 1.45e-07 3.41e-08 1.37e-07 5.73e-08 5.13e-08
ENSG00000117448 \N 421501 1.26e-06 9.52e-07 2.88e-07 7.35e-07 2.19e-07 4.39e-07 1.13e-06 3.33e-07 1.12e-06 3.46e-07 1.4e-06 6.06e-07 1.67e-06 2.57e-07 4.55e-07 5.81e-07 7.73e-07 5.72e-07 4.95e-07 6.07e-07 2.83e-07 8.19e-07 7.15e-07 5.1e-07 1.94e-06 2.48e-07 6.75e-07 4.92e-07 8.56e-07 1.13e-06 5.47e-07 1.52e-07 8.37e-08 4.54e-07 4.63e-07 3.22e-07 3.81e-07 1.36e-07 1.71e-07 6.46e-08 1.45e-07 1.36e-06 6.64e-08 4.19e-08 1.91e-07 7.22e-08 1.7e-07 8.51e-08 6.32e-08
ENSG00000159658 \N -747070 3.62e-07 2.56e-07 6.41e-08 2.53e-07 1.03e-07 1.08e-07 3.11e-07 6.57e-08 1.98e-07 1.11e-07 2.38e-07 1.72e-07 3.4e-07 8.26e-08 6.6e-08 9.35e-08 5.73e-08 2.33e-07 8.68e-08 8.69e-08 1.27e-07 1.81e-07 1.81e-07 4.25e-08 3.27e-07 1.43e-07 1.37e-07 1.36e-07 1.36e-07 2.01e-07 1.43e-07 6.68e-08 3.46e-08 9.98e-08 1.16e-07 3.94e-08 5.45e-08 5.8e-08 4.9e-08 8.06e-08 4.78e-08 1.79e-07 3.18e-08 2.05e-08 3.48e-08 9.44e-09 7.66e-08 0.0 4.91e-08