Genes within 1Mb (chr1:45936499:A:G):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 445336 eQTL 1.20e-19 -0.135 0.0146 0.0 0.0 0.368
ENSG00000079277 MKNK1 -680344 eQTL 1.13e-02 -0.0322 0.0127 0.0 0.0 0.368
ENSG00000086015 MAST2 149512 eQTL 7.85e-08 0.107 0.0197 0.0 0.0 0.368
ENSG00000117461 PIK3R3 -196537 eQTL 2.87e-33 0.238 0.0191 0.00105 0.0019 0.368
ENSG00000117481 NSUN4 -403678 eQTL 5.07e-03 -0.0693 0.0247 0.0 0.0 0.368
ENSG00000123472 ATPAF1 -737368 eQTL 7.65e-04 -0.0663 0.0197 0.0 0.0 0.368
ENSG00000142961 MOB3C -680392 eQTL 2.30e-03 -0.0584 0.0191 0.0 0.0 0.368
ENSG00000159588 CCDC17 312442 eQTL 9.70e-15 0.11 0.014 0.0 0.0 0.368
ENSG00000159592 GPBP1L1 248386 eQTL 1.00e-02 0.028 0.0109 0.0 0.0 0.368
ENSG00000159596 TMEM69 248318 eQTL 5.73e-10 0.137 0.0219 0.0 0.0 0.368
ENSG00000159658 EFCAB14 -782615 pQTL 9.67e-04 -0.0534 0.0162 0.00135 0.0 0.361
ENSG00000162415 ZSWIM5 630290 eQTL 3.56e-02 0.0449 0.0213 0.0 0.0 0.368
ENSG00000197429 IPP 185849 eQTL 1.24e-04 0.0791 0.0205 0.00418 0.00357 0.368
ENSG00000225447 RPS15AP10 290302 eQTL 1.86e-08 -0.19 0.0335 0.0 0.0 0.368
ENSG00000230896 AL604028.1 239424 eQTL 3.27e-02 0.0822 0.0384 0.0 0.0 0.368
ENSG00000234329 AL604028.2 284673 eQTL 2.78e-25 -0.255 0.0239 0.0 0.0 0.368
ENSG00000280670 CCDC163 436420 eQTL 1.24e-05 -0.164 0.0374 0.0 0.0 0.368


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 445336 1.19e-06 9.79e-07 3.06e-07 6.45e-07 1.38e-07 5.26e-07 1.32e-06 2.65e-07 1.12e-06 3.46e-07 1.38e-06 5.86e-07 1.65e-06 2.57e-07 4.35e-07 5.81e-07 7.88e-07 5.66e-07 4e-07 4.36e-07 2.93e-07 9.58e-07 7.96e-07 5.53e-07 1.94e-06 2.47e-07 7.12e-07 4.96e-07 9.4e-07 1.06e-06 5.1e-07 1.52e-07 6.78e-08 3.78e-07 5.41e-07 2.04e-07 2.94e-07 1.39e-07 1.71e-07 4.28e-08 1.39e-07 1.54e-06 9.6e-08 5.71e-08 1.89e-07 9.85e-08 1.6e-07 8.88e-08 5.26e-08
ENSG00000079277 MKNK1 -680344 8.63e-07 5.67e-07 7.97e-08 3.58e-07 1.11e-07 2.09e-07 5.01e-07 7.52e-08 2.6e-07 1.5e-07 3.97e-07 2.49e-07 5.39e-07 1.07e-07 1.5e-07 1.39e-07 1.62e-07 2.9e-07 9.71e-08 8.1e-08 1.52e-07 2.51e-07 2.77e-07 1.04e-07 5.75e-07 1.9e-07 2.22e-07 1.67e-07 2.19e-07 3.15e-07 1.78e-07 7.33e-08 4.86e-08 1.27e-07 3e-07 4.68e-08 7.74e-08 6.46e-08 5.28e-08 5.64e-08 3.24e-08 3.85e-07 4.41e-08 1.04e-08 7.93e-08 1.88e-08 1.03e-07 3.09e-09 4.61e-08
ENSG00000086015 MAST2 149512 5.79e-06 7.73e-06 8.15e-07 3.4e-06 1e-06 1.81e-06 7.23e-06 9.79e-07 4.91e-06 2.5e-06 6.99e-06 3.32e-06 7.66e-06 1.72e-06 1.31e-06 3.85e-06 2.36e-06 3.71e-06 1.44e-06 1e-06 2.9e-06 4.81e-06 4.52e-06 1.39e-06 8.97e-06 1.81e-06 2.33e-06 1.65e-06 4.45e-06 4.26e-06 2.83e-06 5.4e-07 6.09e-07 1.52e-06 2.1e-06 9.23e-07 9.38e-07 4.74e-07 1.06e-06 3.57e-07 1.96e-07 7.37e-06 4.73e-07 1.61e-07 4.14e-07 8.63e-07 9.92e-07 2.41e-07 2.56e-07
ENSG00000117461 PIK3R3 -196537 4.54e-06 4.99e-06 6.05e-07 2.52e-06 5.62e-07 1.69e-06 3.59e-06 9.03e-07 3.19e-06 1.63e-06 4.32e-06 2.85e-06 6.49e-06 2.04e-06 1.06e-06 2.21e-06 2.06e-06 2.3e-06 1.6e-06 1.21e-06 1.62e-06 3.96e-06 3.45e-06 1.8e-06 5.3e-06 1.23e-06 2.43e-06 1.69e-06 3.88e-06 3.11e-06 1.96e-06 4.91e-07 6.41e-07 1.51e-06 2.19e-06 9.48e-07 8.12e-07 4.46e-07 1.23e-06 3.46e-07 2.74e-07 5.26e-06 3.98e-07 1.68e-07 3.27e-07 3.54e-07 7.69e-07 2.33e-07 2.01e-07
ENSG00000123472 ATPAF1 -737368 7.57e-07 3.77e-07 6.99e-08 2.58e-07 1.06e-07 1.57e-07 4.09e-07 6.2e-08 2.04e-07 1.21e-07 2.84e-07 1.96e-07 4.05e-07 8.85e-08 1.24e-07 1.13e-07 8.74e-08 2.56e-07 7.76e-08 8.31e-08 1.39e-07 2.15e-07 2.2e-07 5.11e-08 4.11e-07 1.65e-07 1.74e-07 1.52e-07 1.6e-07 2.01e-07 1.43e-07 8.14e-08 4.37e-08 1.03e-07 1.95e-07 3.24e-08 6.2e-08 5.25e-08 5.25e-08 8.16e-08 4.68e-08 2.8e-07 2.8e-08 1.9e-08 4.99e-08 1.3e-08 9.12e-08 2.71e-09 4.67e-08
ENSG00000132780 \N 352653 1.73e-06 2.14e-06 2.14e-07 1.27e-06 3.2e-07 6.44e-07 1.35e-06 3.69e-07 1.51e-06 5.9e-07 2e-06 8.44e-07 2.55e-06 3.39e-07 4.81e-07 9.54e-07 1e-06 8.27e-07 8.35e-07 6.56e-07 7.68e-07 1.81e-06 1.12e-06 5.17e-07 2.35e-06 5.53e-07 1.03e-06 7.51e-07 1.59e-06 1.2e-06 7.69e-07 2.7e-07 2.31e-07 6.68e-07 7.35e-07 4.32e-07 5.02e-07 2.38e-07 4.8e-07 2.64e-07 2.83e-07 1.91e-06 3.37e-07 1.25e-07 1.52e-07 2.15e-07 2.6e-07 3.66e-08 9.59e-08
ENSG00000142961 MOB3C -680392 8.63e-07 5.67e-07 7.97e-08 3.58e-07 1.11e-07 2.09e-07 5.01e-07 7.52e-08 2.6e-07 1.5e-07 3.97e-07 2.49e-07 5.39e-07 1.07e-07 1.5e-07 1.39e-07 1.62e-07 2.9e-07 9.69e-08 8.1e-08 1.52e-07 2.51e-07 2.77e-07 1.04e-07 5.75e-07 1.9e-07 2.22e-07 1.67e-07 2.19e-07 3.15e-07 1.78e-07 7.33e-08 4.86e-08 1.27e-07 3e-07 4.68e-08 7.74e-08 6.46e-08 5.28e-08 5.64e-08 3.24e-08 3.85e-07 4.41e-08 1.04e-08 7.93e-08 1.88e-08 1.03e-07 3.09e-09 4.61e-08
ENSG00000159588 CCDC17 312442 2.38e-06 2.6e-06 2.17e-07 1.42e-06 3.71e-07 8.1e-07 1.3e-06 4.18e-07 1.7e-06 7.11e-07 1.89e-06 1.29e-06 2.63e-06 7.13e-07 3.31e-07 9.77e-07 1.05e-06 1.13e-06 6.56e-07 4.58e-07 7.61e-07 1.88e-06 1.58e-06 6.61e-07 2.58e-06 7.6e-07 1.13e-06 8.31e-07 1.75e-06 1.36e-06 8.07e-07 2.65e-07 2.42e-07 5.72e-07 9.39e-07 4.54e-07 7.4e-07 2.92e-07 4.8e-07 2.31e-07 2.77e-07 2.62e-06 3.86e-07 1.75e-07 2.98e-07 3.22e-07 3.02e-07 8.15e-08 1.68e-07
ENSG00000159596 TMEM69 248318 4e-06 3.92e-06 3.32e-07 1.93e-06 4.65e-07 8.44e-07 2.37e-06 5.98e-07 1.89e-06 9.51e-07 2.61e-06 1.44e-06 3.49e-06 1.4e-06 9.26e-07 1.51e-06 1.58e-06 2.26e-06 6.68e-07 1.09e-06 9.06e-07 3.01e-06 2.42e-06 1.02e-06 4.06e-06 1.23e-06 1.45e-06 1.4e-06 2.1e-06 1.82e-06 1.8e-06 3.41e-07 3.35e-07 1.22e-06 1.74e-06 6.2e-07 6.46e-07 3.36e-07 9.25e-07 3.32e-07 3.18e-07 3.96e-06 5.79e-07 1.96e-07 3.75e-07 3.37e-07 6.75e-07 2.43e-07 2.61e-07
ENSG00000159658 EFCAB14 -782615 6.09e-07 3.12e-07 6.57e-08 2.54e-07 1.07e-07 1.44e-07 3.44e-07 5.78e-08 1.94e-07 1.05e-07 2.18e-07 1.62e-07 3.18e-07 8.42e-08 9.12e-08 9.35e-08 6.81e-08 2.15e-07 7.42e-08 7.05e-08 1.27e-07 1.9e-07 1.89e-07 3.83e-08 3.27e-07 1.43e-07 1.39e-07 1.47e-07 1.44e-07 1.8e-07 1.26e-07 5.46e-08 3.46e-08 9.9e-08 1.31e-07 2.68e-08 5.96e-08 6.78e-08 4.99e-08 8.06e-08 5.04e-08 2.43e-07 1.67e-08 1.78e-08 3.71e-08 8.59e-09 7.8e-08 0.0 4.91e-08
ENSG00000162415 ZSWIM5 630290 1.01e-06 6.65e-07 1.03e-07 3.77e-07 1.08e-07 2.63e-07 5.76e-07 8.37e-08 3.32e-07 2.01e-07 5.58e-07 3.36e-07 6.77e-07 1.23e-07 2.26e-07 1.76e-07 2.53e-07 3.39e-07 1.51e-07 1.17e-07 1.76e-07 3.1e-07 3.08e-07 1.29e-07 7.71e-07 2.2e-07 2.62e-07 2.01e-07 3e-07 4.51e-07 2e-07 6.56e-08 4.96e-08 1.37e-07 3.35e-07 5.05e-08 1.01e-07 7.86e-08 4.55e-08 5.32e-08 4.32e-08 5.29e-07 5.09e-08 5.68e-09 9.15e-08 1.33e-08 7.36e-08 1.13e-08 4.66e-08
ENSG00000197429 IPP 185849 4.9e-06 5.09e-06 6.93e-07 2.73e-06 6.12e-07 1.66e-06 4.23e-06 9.93e-07 3.82e-06 1.92e-06 4.91e-06 3.37e-06 7.2e-06 2.3e-06 1.3e-06 2.43e-06 1.98e-06 2.79e-06 1.53e-06 1.07e-06 1.97e-06 4.19e-06 3.4e-06 1.72e-06 6.16e-06 1.24e-06 2.66e-06 1.56e-06 4.15e-06 3.39e-06 1.96e-06 5.76e-07 5.04e-07 1.68e-06 2.05e-06 9.68e-07 8.05e-07 4.21e-07 1.3e-06 3.28e-07 3.05e-07 5.76e-06 4.18e-07 1.79e-07 3.04e-07 3.23e-07 6.48e-07 1.98e-07 1.53e-07
ENSG00000225447 RPS15AP10 290302 2.78e-06 2.63e-06 2.93e-07 1.7e-06 3.73e-07 8.48e-07 1.56e-06 3.77e-07 1.76e-06 6.73e-07 1.92e-06 1.45e-06 3.08e-06 1.01e-06 4.8e-07 1.07e-06 9.67e-07 1.34e-06 5.93e-07 5.67e-07 6.34e-07 1.96e-06 1.79e-06 8.71e-07 3.15e-06 9.19e-07 1.18e-06 1.01e-06 1.65e-06 1.66e-06 7.49e-07 2.6e-07 2.89e-07 6.11e-07 1.02e-06 4.89e-07 7.19e-07 3.37e-07 4.94e-07 2.27e-07 2.87e-07 2.84e-06 4.24e-07 2.07e-07 2.87e-07 3.16e-07 4.27e-07 1.41e-07 1.93e-07
ENSG00000234329 AL604028.2 284673 3.06e-06 2.75e-06 2.98e-07 1.7e-06 3.68e-07 8.09e-07 1.71e-06 3.99e-07 1.78e-06 7.61e-07 2.05e-06 1.43e-06 3.25e-06 1.14e-06 5.05e-07 1.1e-06 1.06e-06 1.34e-06 5.56e-07 6.08e-07 6.39e-07 1.92e-06 1.79e-06 9.69e-07 3.45e-06 9.6e-07 1.21e-06 1.05e-06 1.68e-06 1.58e-06 8.55e-07 2.78e-07 2.67e-07 6.84e-07 1.27e-06 4.86e-07 7.71e-07 3.43e-07 4.85e-07 2.29e-07 2.88e-07 2.98e-06 4.93e-07 1.99e-07 3.14e-07 2.93e-07 3.93e-07 1.43e-07 1.97e-07
ENSG00000269956 \N -602197 1.17e-06 7.56e-07 9.89e-08 4.08e-07 1.13e-07 3.08e-07 6.08e-07 9.69e-08 3.94e-07 2.16e-07 6.88e-07 3.65e-07 7.71e-07 1.48e-07 2.81e-07 2.08e-07 3.63e-07 3.67e-07 1.69e-07 1.41e-07 1.86e-07 3.76e-07 3.69e-07 1.61e-07 9.15e-07 2.33e-07 3.16e-07 2.44e-07 3.58e-07 5.56e-07 2.55e-07 5.71e-08 5.53e-08 1.4e-07 3.44e-07 5.2e-08 1.1e-07 7.53e-08 6.72e-08 2.59e-08 4.63e-08 6.11e-07 6.18e-08 5.93e-09 1.1e-07 1.44e-08 1.1e-07 1.22e-08 5.58e-08
ENSG00000280670 CCDC163 436420 1.24e-06 9.74e-07 2.88e-07 6.97e-07 1.56e-07 5.96e-07 1.41e-06 2.84e-07 1.11e-06 3.85e-07 1.35e-06 5.97e-07 1.73e-06 2.78e-07 4.77e-07 6.36e-07 7.93e-07 5.71e-07 3.66e-07 4.68e-07 3.24e-07 1.04e-06 7.76e-07 5.4e-07 2.01e-06 2.7e-07 7.61e-07 5.27e-07 9.81e-07 1.1e-06 5.42e-07 1.55e-07 9.36e-08 4.29e-07 5.8e-07 2.25e-07 3.12e-07 1.59e-07 1.96e-07 8.82e-08 1.22e-07 1.62e-06 1.09e-07 6.48e-08 1.82e-07 1.02e-07 1.9e-07 8.43e-08 5.47e-08