Genes within 1Mb (chr1:45824960:A:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 333797 eQTL 7.80e-21 -0.138 0.0144 0.0 0.0 0.372
ENSG00000079277 MKNK1 -791883 eQTL 8.24e-03 -0.0334 0.0126 0.0 0.0 0.372
ENSG00000086015 MAST2 37973 eQTL 1.94e-08 0.111 0.0196 0.0 0.0 0.372
ENSG00000117461 PIK3R3 -308076 eQTL 4.12e-32 0.233 0.019 0.0 0.0 0.372
ENSG00000117481 NSUN4 -515217 eQTL 4.06e-03 -0.0707 0.0246 0.0 0.0 0.372
ENSG00000123472 ATPAF1 -848907 eQTL 7.46e-04 -0.0662 0.0196 0.0 0.0 0.372
ENSG00000142961 MOB3C -791931 eQTL 7.89e-04 -0.064 0.019 0.0 0.0 0.372
ENSG00000159588 CCDC17 200903 eQTL 4.09e-15 0.111 0.0139 0.0 0.0 0.372
ENSG00000159592 GPBP1L1 136847 eQTL 1.69e-02 0.0258 0.0108 0.0 0.0 0.372
ENSG00000159596 TMEM69 136779 eQTL 2.56e-10 0.139 0.0218 0.0 0.0 0.372
ENSG00000159658 EFCAB14 -894154 pQTL 6.20e-04 -0.0552 0.0161 0.00159 0.00125 0.366
ENSG00000162415 ZSWIM5 518751 eQTL 4.25e-02 0.0431 0.0212 0.0 0.0 0.372
ENSG00000197429 IPP 74310 eQTL 1.40e-04 0.0781 0.0204 0.0037 0.00322 0.372
ENSG00000225447 RPS15AP10 178763 eQTL 2.96e-09 -0.199 0.0332 0.0 0.0 0.372
ENSG00000230896 AL604028.1 127885 eQTL 2.71e-02 0.0846 0.0382 0.0 0.0 0.372
ENSG00000234329 AL604028.2 173134 eQTL 1.77e-26 -0.26 0.0237 0.0 0.0 0.372
ENSG00000280670 CCDC163 324881 eQTL 1.55e-05 -0.162 0.0373 0.0 0.0 0.372


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 333797 8.7e-07 8.16e-07 1.27e-07 3.16e-07 9.26e-08 3.11e-07 6.19e-07 1.48e-07 4.43e-07 2.37e-07 8.28e-07 4.03e-07 9.65e-07 1.56e-07 2.44e-07 2.14e-07 3.52e-07 3.95e-07 2.17e-07 1.91e-07 2.35e-07 3.92e-07 3.99e-07 2.39e-07 1.02e-06 2.55e-07 3.04e-07 2.74e-07 4.15e-07 6.35e-07 3.43e-07 4.25e-08 5.55e-08 1.88e-07 3.41e-07 1.18e-07 1.89e-07 1.12e-07 1.13e-07 8.36e-09 1.85e-07 7.54e-07 4.41e-08 1.94e-08 1.71e-07 1.48e-08 1.17e-07 5.79e-08 6.15e-08
ENSG00000079277 MKNK1 -791883 2.64e-07 1.25e-07 3.54e-08 1.86e-07 8.83e-08 9.65e-08 1.42e-07 5.19e-08 1.4e-07 4.4e-08 1.56e-07 7.78e-08 1.41e-07 6.38e-08 5.84e-08 7.5e-08 3.88e-08 1.14e-07 5.21e-08 4e-08 1.04e-07 1.26e-07 1.34e-07 3.68e-08 1.32e-07 1.14e-07 1.11e-07 9.36e-08 1.05e-07 1.12e-07 9.73e-08 3.06e-08 3.3e-08 8.55e-08 7.66e-08 3.93e-08 5.22e-08 9.23e-08 6.63e-08 3.71e-08 5.41e-08 1.33e-07 4.33e-08 1.2e-08 5.15e-08 1.83e-08 1.24e-07 3.78e-09 4.79e-08
ENSG00000086015 MAST2 37973 1.11e-05 1.48e-05 2.41e-06 8.36e-06 2.37e-06 5.91e-06 1.73e-05 2.16e-06 1.2e-05 6.13e-06 1.67e-05 6.79e-06 2.18e-05 5.16e-06 3.71e-06 7.47e-06 7.09e-06 1.08e-05 3.42e-06 3.16e-06 6.47e-06 1.18e-05 1.29e-05 3.88e-06 2.28e-05 4.61e-06 6.81e-06 5.26e-06 1.41e-05 1.22e-05 7.97e-06 1.04e-06 1.2e-06 3.91e-06 6.09e-06 2.77e-06 1.78e-06 1.95e-06 2.23e-06 1.1e-06 1.05e-06 1.68e-05 1.61e-06 1.96e-07 9.58e-07 1.96e-06 1.84e-06 6.27e-07 4.7e-07
ENSG00000117461 PIK3R3 -308076 1.07e-06 9e-07 1.45e-07 4.03e-07 1.1e-07 3.2e-07 7.1e-07 2e-07 6.53e-07 2.98e-07 1.08e-06 5.22e-07 1.16e-06 2.12e-07 3.13e-07 2.89e-07 5.34e-07 4.39e-07 2.79e-07 3.31e-07 2.55e-07 5.2e-07 5.63e-07 3.24e-07 1.39e-06 2.57e-07 4.34e-07 3.95e-07 5.56e-07 7.92e-07 3.93e-07 3.77e-08 5.82e-08 2.35e-07 3.6e-07 1.52e-07 2.96e-07 1.5e-07 1.38e-07 9.5e-09 2.84e-07 1.01e-06 5.84e-08 2.71e-08 1.95e-07 3.5e-08 1.19e-07 8.57e-08 6.32e-08
ENSG00000123472 ATPAF1 -848907 2.61e-07 1.16e-07 3.59e-08 1.8e-07 8.92e-08 9.87e-08 1.38e-07 5.33e-08 1.41e-07 4.4e-08 1.59e-07 7.75e-08 1.33e-07 6.38e-08 5.53e-08 7.89e-08 4.48e-08 1.14e-07 5.19e-08 4.42e-08 1.05e-07 1.27e-07 1.32e-07 4.05e-08 1.33e-07 1.19e-07 1.12e-07 9.15e-08 1.03e-07 1.12e-07 9.58e-08 3.64e-08 3.26e-08 8.49e-08 8.76e-08 3.77e-08 4.99e-08 9.26e-08 6.54e-08 3.98e-08 5.45e-08 1.33e-07 4.19e-08 1.86e-08 5.43e-08 1.66e-08 1.22e-07 3.81e-09 4.85e-08
ENSG00000132128 \N -478648 3.27e-07 2.4e-07 6.55e-08 2.62e-07 1.02e-07 1.08e-07 2.86e-07 5.89e-08 1.71e-07 1.03e-07 1.96e-07 1.46e-07 2.94e-07 8.66e-08 6.27e-08 8.08e-08 4.63e-08 1.91e-07 7.36e-08 8.69e-08 1.33e-07 1.7e-07 1.89e-07 3.83e-08 2.48e-07 1.39e-07 1.29e-07 1.42e-07 1.34e-07 1.38e-07 1.22e-07 6.68e-08 4.16e-08 9.81e-08 1.31e-07 3.3e-08 7.52e-08 6.1e-08 5.89e-08 7.9e-08 4.4e-08 2.19e-07 3.08e-08 1.84e-08 5.32e-08 9.65e-09 7.26e-08 2.75e-09 4.55e-08
ENSG00000132780 \N 241114 1.25e-06 1.07e-06 3.2e-07 1.26e-06 2.28e-07 5.4e-07 1.58e-06 3.46e-07 1.24e-06 3.83e-07 1.5e-06 6.16e-07 2.02e-06 2.96e-07 4.48e-07 6.94e-07 8.01e-07 5.47e-07 5.54e-07 6.97e-07 4.57e-07 1.2e-06 8.59e-07 6.51e-07 2.25e-06 3.91e-07 7.31e-07 7.2e-07 1.24e-06 1.23e-06 5.91e-07 2.08e-07 2.24e-07 6.95e-07 5.42e-07 4.41e-07 5.53e-07 2.4e-07 4.82e-07 3.23e-07 2.8e-07 1.56e-06 5.77e-08 9e-08 1.52e-07 1.34e-07 2.33e-07 2.77e-08 8.61e-08
ENSG00000142961 MOB3C -791931 2.64e-07 1.25e-07 3.54e-08 1.86e-07 8.83e-08 9.65e-08 1.42e-07 5.19e-08 1.4e-07 4.4e-08 1.56e-07 7.78e-08 1.41e-07 6.38e-08 5.84e-08 7.5e-08 3.88e-08 1.14e-07 5.21e-08 4e-08 1.04e-07 1.26e-07 1.34e-07 3.68e-08 1.32e-07 1.14e-07 1.11e-07 9.36e-08 1.05e-07 1.12e-07 9.73e-08 3.06e-08 3.3e-08 8.55e-08 7.66e-08 3.93e-08 5.22e-08 9.23e-08 6.63e-08 3.71e-08 5.41e-08 1.33e-07 4.33e-08 1.2e-08 5.15e-08 1.83e-08 1.24e-07 3.78e-09 4.79e-08
ENSG00000159588 CCDC17 200903 1.28e-06 2.15e-06 2.95e-07 1.43e-06 3.45e-07 6.58e-07 1.32e-06 4.08e-07 1.66e-06 5.93e-07 2.05e-06 9.26e-07 2.72e-06 4.82e-07 4.98e-07 9.37e-07 9.75e-07 9.65e-07 8.04e-07 4.61e-07 7.55e-07 1.82e-06 1.35e-06 5.79e-07 2.35e-06 7.64e-07 1.02e-06 8.87e-07 1.6e-06 1.34e-06 7.8e-07 2.56e-07 2.67e-07 5.61e-07 8.94e-07 4.6e-07 7.34e-07 3.66e-07 4.83e-07 2.44e-07 3.16e-07 2.09e-06 1.94e-07 1.74e-07 3e-07 2.17e-07 2.42e-07 1.45e-07 1.68e-07
ENSG00000159596 TMEM69 136779 3.16e-06 4.16e-06 4.51e-07 2e-06 4.79e-07 8e-07 2.52e-06 8.51e-07 2.28e-06 1.2e-06 3.13e-06 1.77e-06 4.84e-06 1.3e-06 9.25e-07 1.72e-06 1.54e-06 2.15e-06 1.42e-06 1.28e-06 1.4e-06 3.09e-06 3.35e-06 1.54e-06 4.51e-06 1.19e-06 1.48e-06 1.81e-06 2.76e-06 2.55e-06 2.02e-06 4.17e-07 5.66e-07 1.32e-06 1.9e-06 1.01e-06 8.9e-07 3.79e-07 1.39e-06 3.99e-07 2.66e-07 3.92e-06 5.88e-07 1.86e-07 3.5e-07 4e-07 8.29e-07 2.32e-07 2.01e-07
ENSG00000159658 EFCAB14 -894154 2.61e-07 1.11e-07 3.62e-08 1.82e-07 9.02e-08 9.71e-08 1.38e-07 5.33e-08 1.41e-07 4.38e-08 1.6e-07 7.88e-08 1.3e-07 6.21e-08 5.55e-08 7.89e-08 4.63e-08 1.14e-07 5.19e-08 4.21e-08 1.04e-07 1.28e-07 1.26e-07 4.16e-08 1.31e-07 1.15e-07 1.12e-07 9.15e-08 1.02e-07 1.12e-07 9.58e-08 3.87e-08 3.09e-08 8.65e-08 8.96e-08 3.97e-08 5.08e-08 9.23e-08 6.55e-08 3.37e-08 5.13e-08 1.31e-07 4.04e-08 1.07e-08 5.75e-08 1.67e-08 1.23e-07 3.86e-09 5.09e-08
ENSG00000162415 ZSWIM5 518751 3.07e-07 1.76e-07 6.04e-08 2.41e-07 1.03e-07 7.75e-08 2.24e-07 5.56e-08 1.44e-07 7.6e-08 1.66e-07 1.22e-07 2.29e-07 8.15e-08 5.36e-08 7.97e-08 4.18e-08 1.64e-07 7.09e-08 6.16e-08 1.18e-07 1.42e-07 1.69e-07 4.07e-08 2.09e-07 1.26e-07 1.19e-07 1.12e-07 1.32e-07 1.1e-07 1.14e-07 5.4e-08 3.56e-08 9.72e-08 6.98e-08 2.85e-08 5.71e-08 5.92e-08 4.99e-08 7.17e-08 3.24e-08 1.62e-07 3.99e-08 2.1e-08 3.66e-08 6.53e-09 8.98e-08 0.0 4.83e-08
ENSG00000197429 IPP 74310 5.68e-06 9.31e-06 7.35e-07 4.16e-06 1.66e-06 2.6e-06 9.41e-06 1.25e-06 5.17e-06 3.4e-06 8.88e-06 3.66e-06 1.12e-05 3.85e-06 9.41e-07 4.58e-06 3.71e-06 3.79e-06 1.72e-06 1.69e-06 3.15e-06 6.84e-06 5.83e-06 1.93e-06 1.06e-05 2.37e-06 3.39e-06 1.86e-06 6.6e-06 7.59e-06 3.57e-06 4.96e-07 7.57e-07 2.74e-06 3.01e-06 1.53e-06 1.2e-06 6.94e-07 1.34e-06 7.28e-07 8.36e-07 8.07e-06 7.18e-07 1.6e-07 7.99e-07 9.54e-07 1.03e-06 7.08e-07 4.98e-07
ENSG00000225447 RPS15AP10 178763 1.6e-06 2.66e-06 2.74e-07 1.71e-06 3.86e-07 7.18e-07 1.31e-06 3.83e-07 1.71e-06 7.04e-07 1.76e-06 1.32e-06 2.9e-06 9.33e-07 3.63e-07 1.01e-06 1.11e-06 1.21e-06 5.36e-07 7.4e-07 6.18e-07 1.83e-06 1.78e-06 9.69e-07 2.59e-06 9.6e-07 1.05e-06 1.07e-06 1.74e-06 1.61e-06 7.53e-07 2.74e-07 3.35e-07 8.91e-07 1.07e-06 5.62e-07 7.26e-07 3.86e-07 8.73e-07 2.32e-07 2.44e-07 2.79e-06 3.68e-07 2.07e-07 3.97e-07 3.26e-07 2.94e-07 2.6e-07 2.46e-07
ENSG00000234329 AL604028.2 173134 1.73e-06 2.34e-06 2.98e-07 1.71e-06 4.27e-07 7.75e-07 1.31e-06 4.25e-07 1.8e-06 6.94e-07 1.99e-06 1.46e-06 3.24e-06 1.13e-06 3.18e-07 1e-06 1.12e-06 1.35e-06 5.46e-07 7.6e-07 6.57e-07 1.96e-06 1.88e-06 9.37e-07 2.84e-06 9.87e-07 1.13e-06 1.05e-06 1.63e-06 1.67e-06 7.71e-07 2.48e-07 3.78e-07 9.49e-07 1.13e-06 6.39e-07 7.55e-07 4.1e-07 9.58e-07 2.03e-07 1.52e-07 2.78e-06 4.07e-07 2.07e-07 3.56e-07 3.36e-07 3.68e-07 2.41e-07 2.75e-07
ENSG00000269956 \N -713736 2.69e-07 1.3e-07 3.69e-08 1.9e-07 9.21e-08 9.8e-08 1.49e-07 5.37e-08 1.41e-07 4.74e-08 1.62e-07 8.59e-08 1.41e-07 6.76e-08 6.17e-08 7.17e-08 3.98e-08 1.21e-07 5.39e-08 4.31e-08 1.13e-07 1.27e-07 1.44e-07 2.95e-08 1.4e-07 1.16e-07 1.06e-07 9.65e-08 1.08e-07 1.07e-07 9.64e-08 3.03e-08 3.56e-08 8e-08 5.99e-08 3.6e-08 5.65e-08 8.63e-08 6.58e-08 4.47e-08 5.33e-08 1.33e-07 5.27e-08 1.11e-08 3.84e-08 1.84e-08 1.21e-07 1.89e-09 4.88e-08
ENSG00000280670 CCDC163 324881 9.36e-07 8.33e-07 1.23e-07 3.43e-07 9.29e-08 3.28e-07 6.33e-07 1.56e-07 5.06e-07 2.62e-07 9.46e-07 4.31e-07 9.97e-07 1.76e-07 2.81e-07 2.23e-07 3.93e-07 4.07e-07 2.51e-07 2.63e-07 2.38e-07 4.14e-07 4.66e-07 2.68e-07 1.16e-06 2.7e-07 3.37e-07 3.18e-07 4.63e-07 6.98e-07 3.67e-07 4.4e-08 5.86e-08 2.06e-07 3.22e-07 1.36e-07 2.14e-07 1.24e-07 1.6e-07 8.72e-09 2.12e-07 7.45e-07 4.65e-08 2.62e-08 1.94e-07 2.07e-08 1.3e-07 7.28e-08 6.46e-08