Genes within 1Mb (chr1:45819789:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 328626 eQTL 5.50e-21 -0.139 0.0144 0.0 0.0 0.372
ENSG00000079277 MKNK1 -797054 eQTL 8.03e-03 -0.0335 0.0126 0.0 0.0 0.372
ENSG00000086015 MAST2 32802 eQTL 1.94e-08 0.111 0.0196 0.0 0.0 0.372
ENSG00000117461 PIK3R3 -313247 eQTL 6.58e-32 0.232 0.019 0.0 0.0 0.372
ENSG00000117481 NSUN4 -520388 eQTL 3.79e-03 -0.0712 0.0245 0.0 0.0 0.372
ENSG00000123472 ATPAF1 -854078 eQTL 7.92e-04 -0.0658 0.0195 0.0 0.0 0.372
ENSG00000142961 MOB3C -797102 eQTL 8.31e-04 -0.0637 0.019 0.0 0.0 0.372
ENSG00000159588 CCDC17 195732 eQTL 5.21e-15 0.111 0.0139 0.0 0.0 0.372
ENSG00000159592 GPBP1L1 131676 eQTL 1.83e-02 0.0255 0.0108 0.0 0.0 0.372
ENSG00000159596 TMEM69 131608 eQTL 2.57e-10 0.139 0.0218 0.0 0.0 0.372
ENSG00000159658 EFCAB14 -899325 pQTL 6.45e-04 -0.0551 0.0161 0.00156 0.00121 0.366
ENSG00000162415 ZSWIM5 513580 eQTL 3.51e-02 0.0447 0.0212 0.0 0.0 0.372
ENSG00000197429 IPP 69139 eQTL 1.53e-04 0.0776 0.0204 0.0034 0.00299 0.372
ENSG00000225447 RPS15AP10 173592 eQTL 2.75e-09 -0.199 0.0332 0.0 0.0 0.372
ENSG00000230896 AL604028.1 122714 eQTL 2.59e-02 0.0853 0.0382 0.0 0.0 0.372
ENSG00000234329 AL604028.2 167963 eQTL 1.93e-26 -0.26 0.0237 0.0 0.0 0.372
ENSG00000280670 CCDC163 319710 eQTL 1.46e-05 -0.162 0.0372 0.0 0.0 0.372


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 328626 1.21e-06 8.97e-07 1.58e-07 3.71e-07 1.38e-07 3.22e-07 7.32e-07 2.64e-07 8.7e-07 2.69e-07 1.07e-06 5.55e-07 1.23e-06 2.14e-07 4.12e-07 4.84e-07 6.29e-07 5.12e-07 3.26e-07 3.31e-07 2.62e-07 6.91e-07 5.67e-07 3.24e-07 1.47e-06 2.4e-07 4.97e-07 5.31e-07 6.85e-07 7.79e-07 4.61e-07 4.5e-08 9.89e-08 2.31e-07 3.23e-07 3.02e-07 2.34e-07 1.17e-07 1.11e-07 9.44e-09 2.38e-07 1.13e-06 6.11e-08 5.64e-09 1.89e-07 4.57e-08 1.67e-07 5.79e-08 6.12e-08
ENSG00000079277 MKNK1 -797054 2.67e-07 1.3e-07 4.48e-08 1.81e-07 9.24e-08 9.76e-08 1.61e-07 5.43e-08 1.45e-07 5.42e-08 1.55e-07 9.19e-08 1.52e-07 7.13e-08 6.12e-08 7.49e-08 4.17e-08 1.33e-07 5.82e-08 4.23e-08 1.19e-07 1.24e-07 1.45e-07 2.95e-08 1.5e-07 1.21e-07 1.07e-07 9.92e-08 1.16e-07 1.02e-07 9.92e-08 3.06e-08 3.66e-08 8.25e-08 7.36e-08 3.53e-08 5.31e-08 9.3e-08 6.37e-08 3.86e-08 5.28e-08 1.46e-07 5.22e-08 1.66e-08 4.67e-08 1.86e-08 1.22e-07 3.78e-09 4.94e-08
ENSG00000086015 MAST2 32802 1.5e-05 1.6e-05 3.06e-06 9.98e-06 3.26e-06 7.76e-06 2.17e-05 3.4e-06 1.7e-05 8.7e-06 2.09e-05 8.18e-06 2.93e-05 6.43e-06 5.14e-06 1.02e-05 8.19e-06 1.47e-05 4.95e-06 4.81e-06 8.59e-06 1.7e-05 1.71e-05 5.93e-06 2.64e-05 5.6e-06 8.01e-06 7.86e-06 1.77e-05 1.57e-05 1.14e-05 1.44e-06 1.91e-06 5.15e-06 7.21e-06 4.43e-06 2.37e-06 2.74e-06 3.56e-06 2.67e-06 1.7e-06 2.01e-05 2.52e-06 4.21e-07 2e-06 2.68e-06 3.24e-06 1.52e-06 1.32e-06
ENSG00000117461 PIK3R3 -313247 1.26e-06 9.27e-07 2.1e-07 3.4e-07 1.77e-07 3.36e-07 8.7e-07 2.88e-07 1.08e-06 3.24e-07 1.16e-06 5.62e-07 1.49e-06 2.19e-07 4.34e-07 5.81e-07 7.47e-07 5.33e-07 3.64e-07 4.06e-07 2.8e-07 8.58e-07 6.26e-07 4.09e-07 1.59e-06 2.54e-07 5.56e-07 5.67e-07 8.16e-07 8.5e-07 4.59e-07 3.82e-08 1.35e-07 2.84e-07 3.22e-07 3.35e-07 2.98e-07 1.42e-07 1.55e-07 4.07e-08 2.97e-07 1.3e-06 7.37e-08 5.96e-09 1.81e-07 7.16e-08 1.97e-07 8.25e-08 5.25e-08
ENSG00000123472 ATPAF1 -854078 2.74e-07 1.3e-07 3.88e-08 1.84e-07 9.16e-08 1e-07 1.53e-07 5.4e-08 1.45e-07 4.94e-08 1.57e-07 8.68e-08 1.45e-07 6.76e-08 6.04e-08 7.53e-08 3.87e-08 1.26e-07 5.39e-08 4.04e-08 1.13e-07 1.27e-07 1.39e-07 3.49e-08 1.4e-07 1.14e-07 1.07e-07 9.74e-08 1.12e-07 1.1e-07 9.7e-08 3.65e-08 3.56e-08 8.44e-08 8.21e-08 3.62e-08 5.11e-08 9.23e-08 6.54e-08 3.71e-08 5.03e-08 1.4e-07 5.08e-08 3.23e-08 5.15e-08 1.83e-08 1.21e-07 3.81e-09 4.79e-08
ENSG00000132128 \N -483819 5.74e-07 2.89e-07 7.45e-08 2.53e-07 1.09e-07 1.26e-07 3.7e-07 7.79e-08 2.56e-07 1.5e-07 3.25e-07 2.22e-07 4.27e-07 8.85e-08 1.12e-07 1.49e-07 8.74e-08 2.9e-07 8.93e-08 7.4e-08 1.52e-07 2.45e-07 2.48e-07 5.6e-08 3.7e-07 2e-07 1.72e-07 1.88e-07 2.03e-07 1.89e-07 1.86e-07 6.68e-08 5.07e-08 1.02e-07 1.27e-07 5.32e-08 6.77e-08 5.25e-08 4.72e-08 7.77e-08 5.19e-08 3.27e-07 3.26e-08 7.23e-09 7.26e-08 9.12e-09 9.38e-08 0.0 4.54e-08
ENSG00000132780 \N 235943 1.28e-06 1.08e-06 2.54e-07 1.16e-06 3.75e-07 6.06e-07 1.5e-06 3.9e-07 1.57e-06 6.24e-07 1.85e-06 8.59e-07 2.46e-06 2.83e-07 5.39e-07 9.51e-07 9e-07 9.05e-07 8.61e-07 5.11e-07 8.02e-07 1.89e-06 1.03e-06 5.54e-07 2.16e-06 6.95e-07 9.28e-07 8.48e-07 1.48e-06 1.34e-06 7.84e-07 2.89e-07 3.01e-07 6.64e-07 5.23e-07 4.8e-07 7.49e-07 2.47e-07 4.74e-07 3.15e-07 2.59e-07 1.71e-06 1.22e-07 6.51e-08 3.24e-07 1.98e-07 2.29e-07 4.82e-08 1.7e-07
ENSG00000142961 MOB3C -797102 2.67e-07 1.3e-07 4.48e-08 1.81e-07 9.24e-08 9.76e-08 1.61e-07 5.43e-08 1.45e-07 5.42e-08 1.55e-07 9.19e-08 1.52e-07 7.13e-08 6.12e-08 7.49e-08 4.17e-08 1.33e-07 5.82e-08 4.23e-08 1.19e-07 1.24e-07 1.45e-07 2.95e-08 1.5e-07 1.21e-07 1.07e-07 9.92e-08 1.16e-07 1.02e-07 9.92e-08 3.06e-08 3.66e-08 8.25e-08 7.36e-08 3.53e-08 5.31e-08 9.3e-08 6.37e-08 3.86e-08 5.28e-08 1.46e-07 5.22e-08 1.66e-08 4.67e-08 1.86e-08 1.22e-07 3.78e-09 4.94e-08
ENSG00000159588 CCDC17 195732 1.93e-06 2.14e-06 2.86e-07 1.36e-06 4.39e-07 6.22e-07 1.31e-06 4.22e-07 1.75e-06 7.72e-07 1.89e-06 1.32e-06 2.72e-06 6.19e-07 3.66e-07 1.15e-06 1.07e-06 1.34e-06 5.57e-07 7.26e-07 6.19e-07 1.95e-06 1.61e-06 8.39e-07 2.37e-06 1.01e-06 1.04e-06 1.35e-06 1.69e-06 1.32e-06 7.39e-07 2.73e-07 3.7e-07 7.05e-07 8.23e-07 6.23e-07 6.46e-07 3.27e-07 6.01e-07 2.18e-07 3.05e-07 2.69e-06 3.37e-07 1.41e-07 3.57e-07 3.29e-07 3.78e-07 2.49e-07 2.87e-07
ENSG00000159596 TMEM69 131608 4.35e-06 4.13e-06 6.93e-07 1.77e-06 1.1e-06 9.7e-07 2.69e-06 9.31e-07 3.47e-06 1.94e-06 3.8e-06 2.65e-06 6.2e-06 1.34e-06 1.18e-06 2.54e-06 1.74e-06 2.66e-06 1.42e-06 9.72e-07 2.16e-06 4.2e-06 3.51e-06 1.81e-06 4.68e-06 1.31e-06 1.88e-06 1.79e-06 3.87e-06 2.87e-06 2.05e-06 5.76e-07 7.94e-07 1.74e-06 1.76e-06 9.61e-07 9.31e-07 4.91e-07 1.3e-06 3.8e-07 4.48e-07 4.63e-06 4.6e-07 1.69e-07 3.58e-07 3.93e-07 7.28e-07 2.72e-07 3.21e-07
ENSG00000159658 EFCAB14 -899325 2.74e-07 1.25e-07 3.69e-08 1.82e-07 9.16e-08 9.65e-08 1.49e-07 5.37e-08 1.44e-07 4.74e-08 1.62e-07 8.55e-08 1.41e-07 6.56e-08 6.17e-08 7.3e-08 3.98e-08 1.26e-07 5.36e-08 4.45e-08 1.08e-07 1.28e-07 1.39e-07 3.68e-08 1.37e-07 1.14e-07 1.06e-07 9.61e-08 1.08e-07 1.1e-07 9.64e-08 3.87e-08 3.16e-08 8.55e-08 8.76e-08 3.95e-08 5.03e-08 9.22e-08 6.56e-08 3.98e-08 5.43e-08 1.36e-07 4.52e-08 2.63e-08 5.43e-08 1.99e-08 1.19e-07 3.86e-09 4.85e-08
ENSG00000162415 ZSWIM5 513580 4.89e-07 2.5e-07 6.72e-08 2.41e-07 1.02e-07 1.19e-07 3.33e-07 7.56e-08 2.12e-07 1.37e-07 2.62e-07 1.91e-07 3.6e-07 8.42e-08 9.2e-08 1.17e-07 7.3e-08 2.75e-07 7.53e-08 8.52e-08 1.33e-07 2.24e-07 2.11e-07 4.25e-08 3.14e-07 1.86e-07 1.37e-07 1.69e-07 1.58e-07 1.58e-07 1.59e-07 4.75e-08 4.76e-08 9.81e-08 7.55e-08 5.14e-08 5.62e-08 6.78e-08 4.83e-08 8.09e-08 2.87e-08 2.72e-07 3.53e-08 1.43e-08 4.99e-08 8.07e-09 9.1e-08 0.0 4.68e-08
ENSG00000197429 IPP 69139 7.78e-06 9.39e-06 1.36e-06 4.32e-06 2.4e-06 3.82e-06 9.38e-06 1.81e-06 7.72e-06 4.74e-06 1.05e-05 4.84e-06 1.17e-05 3.8e-06 2.12e-06 6.29e-06 3.65e-06 5.77e-06 2.65e-06 2.78e-06 4.72e-06 8.11e-06 6.94e-06 3.21e-06 1.16e-05 3.33e-06 4.49e-06 3.69e-06 8.02e-06 7.75e-06 4.49e-06 9.71e-07 1.27e-06 2.96e-06 3.31e-06 2.31e-06 1.71e-06 1.9e-06 1.76e-06 9.75e-07 9.34e-07 1.01e-05 1.26e-06 2.03e-07 7.98e-07 1.67e-06 1.31e-06 7.8e-07 4.65e-07
ENSG00000225447 RPS15AP10 173592 2.61e-06 2.66e-06 2.71e-07 1.7e-06 4.71e-07 7.82e-07 1.61e-06 6.05e-07 1.79e-06 9.02e-07 2.1e-06 1.26e-06 3.49e-06 1.11e-06 6.94e-07 1.52e-06 1.06e-06 2.03e-06 7.09e-07 1.13e-06 1.04e-06 2.91e-06 2.11e-06 9.81e-07 2.87e-06 1.28e-06 1.22e-06 1.8e-06 1.89e-06 1.65e-06 1.49e-06 3.22e-07 5.85e-07 1.25e-06 9.46e-07 8.92e-07 8.32e-07 4.38e-07 9.58e-07 3.57e-07 1.96e-07 3.29e-06 3.92e-07 2.07e-07 3.22e-07 3.32e-07 6.75e-07 2.23e-07 2.21e-07
ENSG00000234329 AL604028.2 167963 2.65e-06 2.34e-06 3.31e-07 1.71e-06 5.62e-07 8.21e-07 1.83e-06 6.87e-07 1.92e-06 9.63e-07 2.43e-06 1.35e-06 3.51e-06 1.34e-06 8.32e-07 1.7e-06 9.79e-07 2.23e-06 7.93e-07 1.31e-06 1.16e-06 3.06e-06 2.32e-06 1.05e-06 3.36e-06 1.33e-06 1.33e-06 1.84e-06 1.96e-06 1.66e-06 1.72e-06 3.1e-07 5.19e-07 1.2e-06 1.01e-06 9.6e-07 7.76e-07 3.86e-07 1.11e-06 3.97e-07 2.1e-07 3.31e-06 4.81e-07 1.99e-07 2.99e-07 2.94e-07 7.75e-07 2.42e-07 2e-07
ENSG00000269956 \N -718907 2.77e-07 1.35e-07 4.98e-08 1.9e-07 9.87e-08 9.05e-08 1.73e-07 5.43e-08 1.47e-07 6.4e-08 1.73e-07 1.11e-07 1.69e-07 7.37e-08 5.72e-08 7.74e-08 4.12e-08 1.44e-07 6.07e-08 4.78e-08 1.26e-07 1.26e-07 1.5e-07 2.91e-08 1.65e-07 1.26e-07 1.13e-07 1.06e-07 1.22e-07 1.05e-07 1.08e-07 3.03e-08 3.73e-08 8.72e-08 4.84e-08 3.05e-08 5.61e-08 8.71e-08 6.57e-08 3.67e-08 5.53e-08 1.5e-07 5.21e-08 1.18e-08 3.42e-08 1.77e-08 1.21e-07 1.89e-09 5.02e-08
ENSG00000280670 CCDC163 319710 1.26e-06 8.81e-07 1.87e-07 3.1e-07 1.64e-07 3.12e-07 7.99e-07 2.68e-07 9.02e-07 3.11e-07 1.1e-06 5.95e-07 1.35e-06 2.05e-07 4.17e-07 5.49e-07 6.83e-07 5.27e-07 3.5e-07 3.93e-07 2.82e-07 7.58e-07 6.18e-07 3.59e-07 1.54e-06 2.55e-07 5.24e-07 5.44e-07 7.61e-07 8.51e-07 4.48e-07 3.72e-08 1.21e-07 2.74e-07 3.29e-07 2.99e-07 2.9e-07 1.15e-07 1.41e-07 9.81e-09 2.44e-07 1.22e-06 6.37e-08 5.8e-09 1.8e-07 6.87e-08 1.82e-07 7.35e-08 5.47e-08