Genes within 1Mb (chr1:45582817:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 91654 eQTL 8.33e-25 -0.156 0.0147 0.0 0.0 0.348
ENSG00000086015 MAST2 -204170 eQTL 3.19e-07 0.104 0.0203 0.0 0.0 0.348
ENSG00000117450 PRDX1 59770 eQTL 1.21e-01 -0.0187 0.012 0.00159 0.00105 0.348
ENSG00000117461 PIK3R3 -550219 eQTL 1.28e-21 0.197 0.0201 0.0 0.0 0.348
ENSG00000117481 NSUN4 -757360 eQTL 2.38e-03 -0.077 0.0253 0.0 0.0 0.348
ENSG00000126088 UROD 571867 pQTL 6.01e-03 -0.0413 0.015 0.0 0.0 0.342
ENSG00000126088 UROD 571867 eQTL 1.23e-02 -0.0542 0.0216 0.0 0.0 0.348
ENSG00000132128 LRRC41 -720791 eQTL 4.59e-02 -0.0357 0.0178 0.0 0.0 0.348
ENSG00000132781 MUTYH 242347 eQTL 2.92e-02 -0.0299 0.0137 0.0 0.0 0.348
ENSG00000159588 CCDC17 -41240 eQTL 1.85e-17 0.124 0.0143 0.012 0.00989 0.348
ENSG00000159592 GPBP1L1 -105296 eQTL 1.77e-02 0.0264 0.0111 0.0 0.0 0.348
ENSG00000159596 TMEM69 -105364 eQTL 2.39e-15 0.179 0.0222 0.0 0.0 0.348
ENSG00000162415 ZSWIM5 276608 eQTL 3.23e-02 0.0468 0.0218 0.0 0.0 0.348
ENSG00000197429 IPP -167833 eQTL 8.19e-04 0.0707 0.0211 0.0 0.0 0.348
ENSG00000225447 RPS15AP10 -63380 eQTL 1.52e-12 -0.243 0.034 0.0 0.0 0.348
ENSG00000230896 AL604028.1 -114258 eQTL 2.98e-02 0.0857 0.0394 0.0 0.0 0.348
ENSG00000234329 AL604028.2 -69009 eQTL 2.54e-33 -0.3 0.024 0.0 0.0 0.348
ENSG00000269956 MKNK1-AS1 -955879 eQTL 1.34e-02 -0.0595 0.024 0.0 0.0 0.348
ENSG00000280670 CCDC163 82738 eQTL 1.98e-05 -0.165 0.0384 0.0 0.0 0.348


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 91654 6.87e-06 9.3e-06 7.41e-07 4.87e-06 1.74e-06 3.43e-06 9.17e-06 1.28e-06 5.77e-06 3.57e-06 9e-06 3.52e-06 1.14e-05 4.03e-06 9e-07 4.51e-06 3.7e-06 3.77e-06 2.19e-06 1.71e-06 3.57e-06 7.2e-06 4.86e-06 1.81e-06 1.03e-05 2.12e-06 3.61e-06 2.35e-06 6.2e-06 6.17e-06 3.94e-06 9.58e-07 5.74e-07 2.22e-06 3.41e-06 1.49e-06 1.27e-06 5.58e-07 8.67e-07 6.06e-07 7.2e-07 8.73e-06 8.87e-07 1.61e-07 7.87e-07 1.28e-06 1.15e-06 7.35e-07 3.91e-07
ENSG00000086015 MAST2 -204170 1.38e-06 2.15e-06 2.53e-07 1.71e-06 3.58e-07 6.44e-07 1.51e-06 4.04e-07 1.66e-06 6.19e-07 2.08e-06 7.04e-07 2.64e-06 8.3e-07 5.32e-07 9.27e-07 9.36e-07 9.52e-07 5.83e-07 5.47e-07 7.54e-07 1.82e-06 9.66e-07 5.74e-07 2.35e-06 5.15e-07 9.49e-07 8.53e-07 1.47e-06 1.2e-06 8.51e-07 3.22e-07 2.89e-07 5.61e-07 9.62e-07 4.91e-07 7.68e-07 3.63e-07 5.03e-07 3.03e-07 3.03e-07 1.96e-06 3.73e-07 1.9e-07 2.11e-07 1.48e-07 2.33e-07 1.05e-07 1.46e-07
ENSG00000117450 PRDX1 59770 1.12e-05 1.26e-05 1.54e-06 7.82e-06 2.35e-06 5.5e-06 1.34e-05 2.15e-06 1.06e-05 5.5e-06 1.43e-05 6.14e-06 1.93e-05 4.67e-06 2.59e-06 6.74e-06 6.1e-06 8.19e-06 2.95e-06 2.85e-06 6.52e-06 1.04e-05 8.93e-06 3.36e-06 1.87e-05 3.89e-06 6.12e-06 4.83e-06 1.13e-05 8.58e-06 7.01e-06 1.08e-06 1.33e-06 3.14e-06 5.55e-06 2.63e-06 1.9e-06 1.94e-06 1.68e-06 9.75e-07 9.4e-07 1.48e-05 1.63e-06 1.9e-07 7.98e-07 1.63e-06 1.48e-06 7.76e-07 5.08e-07
ENSG00000117461 PIK3R3 -550219 2.69e-07 1.3e-07 4.08e-08 1.9e-07 9.21e-08 9.91e-08 1.42e-07 5.37e-08 1.4e-07 4.57e-08 1.62e-07 7.75e-08 1.45e-07 7.13e-08 5.99e-08 7.26e-08 3.94e-08 1.18e-07 5.75e-08 5.04e-08 1.19e-07 1.23e-07 1.34e-07 3.42e-08 1.37e-07 1.16e-07 1.08e-07 9.61e-08 1.05e-07 1.12e-07 9.91e-08 4.4e-08 3.73e-08 8.56e-08 3.63e-08 3.94e-08 5.26e-08 8.63e-08 6.54e-08 3.87e-08 4.94e-08 1.35e-07 5.08e-08 1.76e-08 5.43e-08 1.84e-08 1.21e-07 1.9e-09 5.01e-08
ENSG00000132780 \N -1029 0.000131 0.000125 2.75e-05 5.23e-05 2.49e-05 4.93e-05 0.000129 2.51e-05 0.000124 7.33e-05 0.000164 6.39e-05 0.000172 4.94e-05 2.63e-05 9.35e-05 6.35e-05 9.41e-05 2.92e-05 3.03e-05 6.64e-05 0.000143 0.000111 4.02e-05 0.00016 4.22e-05 6.53e-05 5.58e-05 0.000108 8.19e-05 7.85e-05 8.88e-06 1.23e-05 2.34e-05 3.99e-05 2.46e-05 1.3e-05 1.6e-05 1.89e-05 1.07e-05 9.38e-06 0.000115 1.56e-05 2.43e-06 1.28e-05 1.98e-05 1.69e-05 1.32e-05 7.5e-06
ENSG00000159588 CCDC17 -41240 1.54e-05 1.81e-05 2.47e-06 1.04e-05 3.03e-06 7.76e-06 2.26e-05 2.93e-06 1.64e-05 7.9e-06 2.04e-05 7.98e-06 2.87e-05 7.58e-06 4.27e-06 9.24e-06 8.63e-06 1.27e-05 4.51e-06 3.59e-06 8.07e-06 1.47e-05 1.47e-05 4.28e-06 2.71e-05 5.05e-06 7.74e-06 6.91e-06 1.61e-05 1.31e-05 1.13e-05 1.25e-06 1.29e-06 3.91e-06 7.58e-06 3.41e-06 1.76e-06 2.38e-06 2.13e-06 1.45e-06 1.3e-06 2.02e-05 2.54e-06 2.5e-07 1.29e-06 2.15e-06 2.18e-06 7.3e-07 4.58e-07
ENSG00000159596 TMEM69 -105364 5.53e-06 7.73e-06 6.25e-07 3.95e-06 1.66e-06 1.98e-06 7.48e-06 1.17e-06 4.5e-06 2.81e-06 7.34e-06 3.18e-06 9.98e-06 3.17e-06 1.33e-06 3.72e-06 2.72e-06 3.95e-06 1.5e-06 1.25e-06 2.61e-06 5.15e-06 4.49e-06 1.39e-06 9.13e-06 1.87e-06 2.3e-06 1.73e-06 4.49e-06 4.25e-06 2.59e-06 6.75e-07 6.32e-07 1.66e-06 2.42e-06 1.16e-06 1.06e-06 4.39e-07 9.31e-07 4.08e-07 5.82e-07 7.98e-06 6.63e-07 1.68e-07 5.95e-07 6.57e-07 9.76e-07 4.28e-07 3.21e-07
ENSG00000162415 ZSWIM5 276608 1.27e-06 9.36e-07 2.06e-07 6.49e-07 1.11e-07 4.08e-07 6.54e-07 2.21e-07 6.53e-07 3.04e-07 1.04e-06 3.84e-07 1.48e-06 2.65e-07 3.16e-07 2.89e-07 5.56e-07 4.39e-07 4e-07 5.19e-07 2.57e-07 5.18e-07 3.99e-07 2.49e-07 1.38e-06 2.68e-07 4.25e-07 4.77e-07 5.16e-07 7.36e-07 4.02e-07 1.92e-07 9.89e-08 3.55e-07 4.05e-07 1.85e-07 6.25e-07 1.5e-07 8.72e-08 1.56e-08 1.47e-07 9.49e-07 5.37e-08 1.31e-07 1.58e-07 4.18e-08 1.21e-07 8.57e-08 6.03e-08
ENSG00000225447 RPS15AP10 -63380 1.05e-05 1.24e-05 1.26e-06 7.53e-06 2.57e-06 5.16e-06 1.2e-05 2.13e-06 1.04e-05 5.36e-06 1.38e-05 5.73e-06 1.82e-05 4.45e-06 2.34e-06 6.36e-06 5.59e-06 7.91e-06 2.93e-06 2.91e-06 6.18e-06 9.86e-06 7.99e-06 3.17e-06 1.72e-05 3.49e-06 5.48e-06 4.64e-06 1.02e-05 8e-06 6.53e-06 1.04e-06 1.12e-06 2.93e-06 5.39e-06 2.66e-06 1.87e-06 1.98e-06 1.62e-06 1e-06 9.92e-07 1.39e-05 1.54e-06 1.61e-07 7.78e-07 1.51e-06 1.31e-06 7.19e-07 5.78e-07
ENSG00000230896 AL604028.1 -114258 5.11e-06 6.14e-06 7.11e-07 3.88e-06 1.62e-06 1.54e-06 5.56e-06 9.79e-07 4.95e-06 2.5e-06 6.04e-06 3.45e-06 8.47e-06 2.19e-06 1.37e-06 3.64e-06 1.94e-06 3.49e-06 1.55e-06 1.14e-06 2.83e-06 4.95e-06 4.02e-06 1.63e-06 7.97e-06 1.46e-06 2.43e-06 1.44e-06 4.53e-06 4.16e-06 2.83e-06 5.87e-07 8.12e-07 1.52e-06 1.97e-06 9.89e-07 1.06e-06 4.24e-07 1.1e-06 4.16e-07 4.51e-07 6.8e-06 4.73e-07 1.56e-07 3.43e-07 3.75e-07 8.4e-07 3.79e-07 1.79e-07
ENSG00000234329 AL604028.2 -69009 9.7e-06 1.18e-05 1.28e-06 6.9e-06 2.38e-06 4.65e-06 1.12e-05 2.04e-06 9.91e-06 5.03e-06 1.24e-05 5.33e-06 1.62e-05 3.97e-06 2.11e-06 6.54e-06 4.74e-06 7.17e-06 2.6e-06 2.74e-06 5.55e-06 9e-06 7.15e-06 2.85e-06 1.5e-05 3.09e-06 4.84e-06 4.08e-06 9.09e-06 7.87e-06 5.67e-06 9.7e-07 8.4e-07 2.89e-06 4.9e-06 2.21e-06 1.72e-06 1.86e-06 1.38e-06 9.98e-07 9.79e-07 1.3e-05 1.49e-06 1.35e-07 7.56e-07 1.17e-06 1.09e-06 7.11e-07 6.2e-07
ENSG00000269956 MKNK1-AS1 -955879 2.6e-07 1.08e-07 3.39e-08 1.7e-07 9.91e-08 9.36e-08 1.36e-07 5.21e-08 1.32e-07 4.23e-08 1.61e-07 7.49e-08 1.21e-07 6.07e-08 4.89e-08 7.76e-08 5.12e-08 1.06e-07 5.22e-08 3.89e-08 1.03e-07 1.31e-07 1.31e-07 4.99e-08 1.33e-07 1.09e-07 1.11e-07 8.45e-08 1.05e-07 1.09e-07 9.5e-08 4.03e-08 2.74e-08 8.3e-08 9.14e-08 4.12e-08 4.89e-08 9.25e-08 8.22e-08 3.59e-08 3.34e-08 1.4e-07 4.01e-08 1.18e-08 9.21e-08 1.75e-08 1.35e-07 4.26e-09 4.77e-08
ENSG00000280670 CCDC163 82738 7.78e-06 9.41e-06 1.01e-06 5.63e-06 2.06e-06 3.88e-06 9.52e-06 1.46e-06 7.4e-06 4.28e-06 1.04e-05 4.54e-06 1.27e-05 3.78e-06 1.17e-06 5.39e-06 3.84e-06 4.4e-06 2.55e-06 2.11e-06 4.52e-06 7.51e-06 5.83e-06 2e-06 1.23e-05 2.21e-06 4.36e-06 3.1e-06 7.05e-06 7.22e-06 4.4e-06 1.01e-06 7.75e-07 2.62e-06 3.93e-06 1.91e-06 1.39e-06 9.96e-07 9.19e-07 7.17e-07 8.13e-07 1.06e-05 1.29e-06 1.56e-07 7.95e-07 1.07e-06 1.05e-06 6.82e-07 4.68e-07