Genes within 1Mb (chr1:45527446:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 36283 eQTL 7.86e-04 -0.083 0.0247 0.0 0.0 0.0972
ENSG00000085999 RAD54L -720242 eQTL 2.31e-02 0.0744 0.0327 0.0 0.0 0.0972
ENSG00000086015 MAST2 -259541 eQTL 1.17e-05 -0.143 0.0324 0.0 0.0 0.0972
ENSG00000117425 PTCH2 684193 eQTL 3.44e-02 -0.0831 0.0392 0.0 0.0 0.0972
ENSG00000117450 PRDX1 4399 eQTL 1.74e-04 -0.0717 0.019 0.00126 0.00111 0.0972
ENSG00000117461 PIK3R3 -605590 eQTL 2.94e-02 0.073 0.0335 0.0 0.0 0.0972
ENSG00000117481 NSUN4 -812731 eQTL 1.64e-02 -0.0969 0.0403 0.0 0.0 0.0972
ENSG00000126088 UROD 516496 pQTL 5.60e-03 -0.0695 0.025 0.0 0.0 0.0918
ENSG00000132763 MMACHC 27146 eQTL 1.39e-02 -0.125 0.0506 0.0 0.0 0.0972
ENSG00000132773 TOE1 187394 eQTL 1.20e-02 0.0553 0.0219 0.0 0.0 0.0972
ENSG00000132780 NASP -56400 eQTL 2.14e-04 0.0989 0.0266 0.0 0.0 0.0972
ENSG00000159588 CCDC17 -96611 eQTL 4.16e-17 0.195 0.0227 0.0 0.0 0.0972
ENSG00000159596 TMEM69 -160735 eQTL 1.58e-05 0.157 0.0361 0.0 0.0 0.0972
ENSG00000197429 IPP -223204 eQTL 1.80e-03 0.105 0.0336 0.0 0.0 0.0972
ENSG00000222009 BTBD19 718964 eQTL 3.12e-04 0.0879 0.0243 0.0 0.0 0.0972
ENSG00000225721 AL592166.1 751636 eQTL 7.99e-04 -0.199 0.059 0.0 0.0 0.0972
ENSG00000280670 CCDC163 27367 eQTL 4.76e-64 -0.969 0.0531 0.0 0.0 0.0972


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 36283 2.1e-05 2.22e-05 2.44e-06 1.03e-05 2.48e-06 7.99e-06 2.32e-05 2.92e-06 1.66e-05 7.94e-06 2.15e-05 8.01e-06 3.17e-05 7.53e-06 5.07e-06 9.02e-06 8.68e-06 1.29e-05 4.25e-06 4.11e-06 7.59e-06 1.66e-05 1.63e-05 4.48e-06 2.54e-05 4.96e-06 7.92e-06 6.87e-06 1.62e-05 1.38e-05 1.09e-05 1.06e-06 1.4e-06 3.69e-06 6.62e-06 3.3e-06 1.78e-06 2.38e-06 2.49e-06 1.88e-06 1.01e-06 2.31e-05 2.71e-06 1.64e-07 9.29e-07 2.32e-06 2.03e-06 6.16e-07 5.35e-07
ENSG00000086015 MAST2 -259541 1.34e-06 1.27e-06 2.9e-07 1.02e-06 2.98e-07 6.31e-07 1.6e-06 3.52e-07 1.42e-06 4.24e-07 1.67e-06 5.64e-07 2.02e-06 2.83e-07 5.69e-07 8.02e-07 9.31e-07 6.58e-07 8.26e-07 5.01e-07 6.51e-07 1.6e-06 8.91e-07 6.1e-07 2.24e-06 4.79e-07 9.3e-07 8.09e-07 1.18e-06 1.23e-06 5.72e-07 2.65e-07 2.86e-07 5.39e-07 6.02e-07 4.4e-07 5.53e-07 1.65e-07 3.35e-07 3.15e-07 1.67e-07 1.46e-06 4.42e-07 1.25e-07 1.92e-07 1.25e-07 2.37e-07 4.85e-08 8.21e-08
ENSG00000117425 PTCH2 684193 2.77e-07 1.35e-07 6.04e-08 1.81e-07 9.79e-08 9.91e-08 1.61e-07 5.4e-08 1.45e-07 4.74e-08 1.57e-07 8.36e-08 1.47e-07 7.13e-08 6.12e-08 7.53e-08 4.12e-08 1.27e-07 5.97e-08 5.07e-08 1.22e-07 1.24e-07 1.39e-07 3.03e-08 1.46e-07 1.14e-07 1.18e-07 9.74e-08 1.08e-07 1.07e-07 9.64e-08 5.24e-08 3.21e-08 8.34e-08 7.02e-08 3.28e-08 5.59e-08 8.61e-08 6.54e-08 4.19e-08 3.89e-08 1.33e-07 3.46e-08 1.56e-08 4.67e-08 1.89e-08 1.18e-07 2.02e-09 5.04e-08
ENSG00000117450 PRDX1 4399 4.79e-05 3.76e-05 6.39e-06 1.62e-05 6.73e-06 1.63e-05 5.03e-05 5.4e-06 3.78e-05 1.83e-05 4.55e-05 2.1e-05 5.93e-05 1.65e-05 8.15e-06 2.32e-05 2.01e-05 3.08e-05 9.12e-06 7.61e-06 1.88e-05 4.26e-05 3.6e-05 1.02e-05 5.06e-05 9.62e-06 1.78e-05 1.52e-05 3.72e-05 2.73e-05 2.3e-05 1.63e-06 2.9e-06 7.93e-06 1.21e-05 6.24e-06 3.19e-06 3.25e-06 5.3e-06 3.35e-06 1.72e-06 4.51e-05 4.42e-06 3.66e-07 2.77e-06 4.81e-06 4.55e-06 1.67e-06 1.54e-06
ENSG00000117481 NSUN4 -812731 2.74e-07 1.25e-07 4.91e-08 1.82e-07 9.21e-08 9.61e-08 1.42e-07 5.33e-08 1.41e-07 4.4e-08 1.56e-07 7.75e-08 1.33e-07 6.38e-08 6e-08 7.17e-08 3.98e-08 1.14e-07 5.36e-08 4.23e-08 1.08e-07 1.23e-07 1.26e-07 3.79e-08 1.33e-07 1.14e-07 1.07e-07 9.36e-08 1.03e-07 1.12e-07 9.58e-08 3.84e-08 3.89e-08 8.65e-08 8.96e-08 3.94e-08 5.02e-08 9.23e-08 7.52e-08 3.98e-08 4.6e-08 1.31e-07 4.17e-08 1.43e-08 5.75e-08 1.99e-08 1.22e-07 1.89e-09 4.81e-08
ENSG00000132773 TOE1 187394 3.47e-06 3.15e-06 4.62e-07 1.7e-06 4.93e-07 8.45e-07 1.87e-06 4.21e-07 1.68e-06 7.38e-07 2.11e-06 1.45e-06 3.33e-06 1.38e-06 8.18e-07 1.22e-06 1.23e-06 1.85e-06 7.34e-07 1.41e-06 8.12e-07 2.67e-06 1.86e-06 8.71e-07 3.08e-06 1.29e-06 1.39e-06 1.6e-06 1.71e-06 1.63e-06 1.06e-06 4.33e-07 5.69e-07 6.49e-07 9.55e-07 7.46e-07 7.01e-07 3.21e-07 7.16e-07 3.75e-07 3.06e-07 3e-06 4.77e-07 1.98e-07 3.45e-07 3.46e-07 3.99e-07 2.22e-07 2.71e-07
ENSG00000132780 NASP -56400 1.42e-05 1.48e-05 1.56e-06 7.29e-06 2.31e-06 5.83e-06 1.53e-05 2.2e-06 1.07e-05 5.5e-06 1.59e-05 6.14e-06 2.09e-05 4.49e-06 3.58e-06 6.67e-06 6.45e-06 9.12e-06 3.05e-06 3.05e-06 6.11e-06 1.12e-05 1.02e-05 3.32e-06 1.71e-05 4.46e-06 6.57e-06 4.83e-06 1.2e-05 9.24e-06 7e-06 9.96e-07 1.23e-06 2.93e-06 5.12e-06 2.62e-06 1.71e-06 1.95e-06 2.19e-06 9.98e-07 8.22e-07 1.61e-05 1.76e-06 1.64e-07 6.8e-07 1.74e-06 1.38e-06 7.76e-07 4.15e-07
ENSG00000159588 CCDC17 -96611 7.93e-06 9.27e-06 7.77e-07 3.85e-06 1.66e-06 2.76e-06 9.36e-06 1.2e-06 5.07e-06 3.17e-06 9.14e-06 3.01e-06 1.07e-05 3.58e-06 1.3e-06 3.93e-06 3.7e-06 3.75e-06 1.72e-06 2.07e-06 2.51e-06 7.22e-06 5.05e-06 1.71e-06 8.91e-06 2.27e-06 3.57e-06 2.09e-06 5.92e-06 6.17e-06 3.42e-06 5.03e-07 6.44e-07 1.65e-06 2.36e-06 1.31e-06 1.1e-06 4.66e-07 9.61e-07 8.05e-07 3.75e-07 8.16e-06 1.28e-06 1.58e-07 6.1e-07 1.07e-06 1.12e-06 7.35e-07 4.53e-07
ENSG00000159592 \N -160667 4.36e-06 4.57e-06 6.52e-07 1.99e-06 4.89e-07 8.5e-07 2.43e-06 6.75e-07 2.36e-06 1.2e-06 3.14e-06 1.45e-06 4.2e-06 1.36e-06 9.24e-07 1.69e-06 1.72e-06 2.15e-06 1.61e-06 9.54e-07 1.4e-06 3.35e-06 2.69e-06 1.05e-06 4.02e-06 1.28e-06 1.8e-06 1.71e-06 2.57e-06 2.23e-06 2.08e-06 5.26e-07 7.33e-07 1.25e-06 1.63e-06 9.34e-07 7.36e-07 4.38e-07 1.13e-06 3.28e-07 3.58e-07 3.83e-06 3.82e-07 1.95e-07 3.38e-07 4.03e-07 6.76e-07 1.99e-07 2.1e-07
ENSG00000159596 TMEM69 -160735 4.36e-06 4.57e-06 6.52e-07 1.99e-06 4.89e-07 8.5e-07 2.43e-06 6.57e-07 2.36e-06 1.2e-06 3.14e-06 1.39e-06 4.11e-06 1.36e-06 9.24e-07 1.69e-06 1.72e-06 2.15e-06 1.61e-06 9.73e-07 1.4e-06 3.35e-06 2.69e-06 1.05e-06 4.02e-06 1.28e-06 1.8e-06 1.69e-06 2.57e-06 2.23e-06 2.03e-06 5.26e-07 7.33e-07 1.26e-06 1.63e-06 9.34e-07 7.36e-07 4.38e-07 1.13e-06 3.28e-07 3.58e-07 3.83e-06 3.82e-07 1.95e-07 3.38e-07 4.02e-07 6.76e-07 1.99e-07 2.1e-07
ENSG00000173660 \N -776252 2.74e-07 1.3e-07 4.98e-08 1.82e-07 9.16e-08 1e-07 1.44e-07 5.19e-08 1.44e-07 4.4e-08 1.62e-07 7.75e-08 1.41e-07 6.56e-08 6.17e-08 7.37e-08 3.87e-08 1.18e-07 5.39e-08 4.21e-08 1.13e-07 1.27e-07 1.32e-07 3.68e-08 1.32e-07 1.14e-07 1.07e-07 9.57e-08 1.03e-07 1.11e-07 9.73e-08 4.4e-08 4.02e-08 8.49e-08 8.74e-08 3.6e-08 5.08e-08 9.26e-08 7.47e-08 3.71e-08 4.69e-08 1.33e-07 3.4e-08 1.08e-08 5.7e-08 1.83e-08 1.19e-07 1.91e-09 4.79e-08
ENSG00000225721 AL592166.1 751636 2.67e-07 1.3e-07 5.49e-08 1.8e-07 9.25e-08 9.8e-08 1.44e-07 5.2e-08 1.44e-07 4.57e-08 1.62e-07 7.78e-08 1.41e-07 6.56e-08 6.02e-08 7.37e-08 3.93e-08 1.21e-07 5.82e-08 4.78e-08 1.13e-07 1.28e-07 1.34e-07 3.49e-08 1.37e-07 1.16e-07 1.07e-07 9.65e-08 1.05e-07 1.12e-07 9.73e-08 4.69e-08 3.43e-08 8.68e-08 8.38e-08 3.65e-08 4.95e-08 9.36e-08 7.2e-08 3.8e-08 4.51e-08 1.35e-07 3.02e-08 7.24e-09 5.19e-08 1.84e-08 1.19e-07 1.93e-09 4.94e-08
ENSG00000280670 CCDC163 27367 2.59e-05 2.63e-05 2.96e-06 1.22e-05 3.07e-06 9.68e-06 2.83e-05 3.39e-06 1.87e-05 9.47e-06 2.58e-05 9.35e-06 3.66e-05 9.29e-06 5.37e-06 1.03e-05 1.03e-05 1.59e-05 5.04e-06 4.54e-06 8.63e-06 2.06e-05 1.98e-05 5.14e-06 2.93e-05 5.33e-06 8.05e-06 8.02e-06 1.91e-05 1.63e-05 1.28e-05 1.11e-06 1.68e-06 4.03e-06 7.74e-06 3.83e-06 1.77e-06 2.72e-06 3.01e-06 2.17e-06 9.79e-07 2.75e-05 2.66e-06 1.59e-07 1.37e-06 2.64e-06 2.84e-06 8.83e-07 8.01e-07
ENSG00000281912 \N 223536 1.91e-06 2.35e-06 2.59e-07 1.28e-06 3.91e-07 6.48e-07 1.23e-06 3.97e-07 1.73e-06 6.05e-07 2.09e-06 8.67e-07 2.61e-06 5.83e-07 3.61e-07 9.92e-07 1.12e-06 1.09e-06 5.75e-07 7.99e-07 7.41e-07 1.98e-06 1.14e-06 5.57e-07 2.39e-06 7.94e-07 1.04e-06 9.91e-07 1.63e-06 1.27e-06 8.22e-07 2.69e-07 3.74e-07 6.61e-07 5.82e-07 5.41e-07 7.71e-07 2.92e-07 4.53e-07 2.08e-07 2.83e-07 2.05e-06 4.85e-07 1.91e-07 2.22e-07 2.14e-07 2.39e-07 1.69e-07 1.69e-07