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Genes within 1Mb (chr1:45471028:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000070759 TESK2 -20135 sc-eQTL 5.27e-01 0.131 0.206 0.052 PB L2
ENSG00000070785 EIF2B3 484306 sc-eQTL 7.81e-01 -0.0488 0.176 0.052 PB L2
ENSG00000085998 POMGNT1 -749277 sc-eQTL 2.93e-01 -0.223 0.211 0.052 PB L2
ENSG00000086015 MAST2 -315959 sc-eQTL 1.50e-01 0.316 0.218 0.052 PB L2
ENSG00000117425 PTCH2 627775 sc-eQTL 4.32e-01 -0.159 0.201 0.052 PB L2
ENSG00000117448 AKR1A1 -79515 sc-eQTL 1.88e-01 0.15 0.113 0.052 PB L2
ENSG00000117450 PRDX1 -52019 sc-eQTL 5.86e-01 0.0561 0.103 0.052 PB L2
ENSG00000117481 NSUN4 -869149 sc-eQTL 9.64e-01 -0.011 0.242 0.052 PB L2
ENSG00000126088 UROD 460078 sc-eQTL 7.09e-01 0.0575 0.154 0.052 PB L2
ENSG00000126106 TMEM53 796547 sc-eQTL 2.88e-01 -0.218 0.204 0.052 PB L2
ENSG00000126107 HECTD3 459704 sc-eQTL 3.17e-03 0.493 0.163 0.052 PB L2
ENSG00000132128 LRRC41 -832580 sc-eQTL 1.49e-03 0.602 0.185 0.052 PB L2
ENSG00000132773 TOE1 130976 sc-eQTL 4.24e-01 -0.175 0.218 0.052 PB L2
ENSG00000132780 NASP -112818 sc-eQTL 8.93e-01 -0.0309 0.229 0.052 PB L2
ENSG00000132781 MUTYH 130135 sc-eQTL 4.25e-01 0.191 0.238 0.052 PB L2
ENSG00000142937 RPS8 695777 sc-eQTL 5.08e-01 0.0758 0.114 0.052 PB L2
ENSG00000159592 GPBP1L1 -217085 sc-eQTL 5.12e-01 -0.155 0.236 0.052 PB L2
ENSG00000159596 TMEM69 -217153 sc-eQTL 4.14e-01 -0.161 0.197 0.052 PB L2
ENSG00000173660 UQCRH -832670 sc-eQTL 5.17e-01 -0.0774 0.119 0.052 PB L2
ENSG00000173846 PLK3 670651 sc-eQTL 2.16e-01 -0.261 0.209 0.052 PB L2
ENSG00000197429 IPP -279625 sc-eQTL 3.80e-01 -0.197 0.223 0.052 PB L2
ENSG00000198520 ARMH1 796336 sc-eQTL 4.96e-01 0.126 0.184 0.052 PB L2
ENSG00000280670 CCDC163 -29051 sc-eQTL 4.71e-01 -0.127 0.176 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 -20135 eQTL 0.515 0.0238 0.0366 0.00127 0.0 0.0402
ENSG00000117450 PRDX1 -52019 eQTL 0.00103 0.0927 0.0282 0.00166 0.0 0.0402
ENSG00000126088 UROD 460078 pQTL 0.0298 0.0823 0.0378 0.0 0.0 0.0358
ENSG00000132763 MMACHC -29272 eQTL 1.03e-06 0.364 0.074 0.00737 0.00747 0.0402
ENSG00000159596 TMEM69 -217153 eQTL 2.03e-07 -0.278 0.0531 0.0 0.0 0.0402
ENSG00000222009 BTBD19 662546 eQTL 0.000543 -0.125 0.0359 0.0 0.0 0.0402
ENSG00000225721 AL592166.1 695218 eQTL 8.26e-06 0.389 0.0868 0.00184 0.00232 0.0402
ENSG00000234329 AL604028.2 -180798 eQTL 0.0097 0.157 0.0607 0.0 0.0 0.0402
ENSG00000280670 CCDC163 -29051 eQTL 2.55e-120 1.85 0.0684 0.0 0.0 0.0402

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000159596 TMEM69 -217153 1.58e-06 2.37e-06 2.87e-07 1.43e-06 3.95e-07 6.38e-07 1.25e-06 4.21e-07 1.78e-06 7.04e-07 1.89e-06 1.28e-06 2.9e-06 7.96e-07 4.58e-07 9.61e-07 1.14e-06 1.29e-06 5.59e-07 4.74e-07 7e-07 1.98e-06 1.38e-06 6.29e-07 2.59e-06 8.9e-07 1e-06 9.81e-07 1.75e-06 1.61e-06 7.64e-07 2.86e-07 2.98e-07 6.13e-07 9.18e-07 5.99e-07 7.71e-07 3.43e-07 4.85e-07 2.09e-07 2.56e-07 2.76e-06 3.37e-07 1.89e-07 2.78e-07 2.13e-07 2.28e-07 1.44e-07 2.4e-07
ENSG00000225721 AL592166.1 695218 3.02e-07 1.51e-07 5.72e-08 2.26e-07 1.03e-07 8.63e-08 1.99e-07 5.82e-08 1.54e-07 6.75e-08 1.61e-07 1.2e-07 2.05e-07 8e-08 5.98e-08 7.98e-08 4.18e-08 1.64e-07 7.09e-08 5.04e-08 1.22e-07 1.31e-07 1.58e-07 2.68e-08 2.09e-07 1.31e-07 1.17e-07 1.06e-07 1.34e-07 1.17e-07 1.09e-07 3.39e-08 3.21e-08 9.8e-08 4.04e-08 2.85e-08 4.41e-08 7.61e-08 6.3e-08 3.99e-08 4.92e-08 1.59e-07 4.83e-08 1.76e-08 3.81e-08 1.8e-08 1.15e-07 1.96e-09 4.94e-08
ENSG00000234329 AL604028.2 -180798 2.41e-06 2.63e-06 2.71e-07 1.85e-06 4.49e-07 8.62e-07 1.63e-06 6.57e-07 1.96e-06 8.25e-07 2.46e-06 1.31e-06 3.5e-06 1.35e-06 4.4e-07 1.24e-06 1.09e-06 2.18e-06 7.66e-07 8.15e-07 7.78e-07 2.31e-06 2e-06 9.78e-07 3.8e-06 1.2e-06 1.27e-06 1.38e-06 1.86e-06 1.79e-06 1.74e-06 2.73e-07 3.95e-07 1.26e-06 1.45e-06 8.85e-07 7.53e-07 4.62e-07 7.29e-07 3.35e-07 3.02e-07 3.32e-06 4.16e-07 1.81e-07 3.83e-07 2.93e-07 4.11e-07 2.42e-07 3.01e-07
ENSG00000280670 CCDC163 -29051 1.12e-05 1.33e-05 2.25e-06 7.65e-06 2.41e-06 5.82e-06 1.45e-05 2.39e-06 1.28e-05 6.11e-06 1.74e-05 6.86e-06 2.26e-05 4.89e-06 3.71e-06 7.34e-06 6.78e-06 1.03e-05 3.52e-06 3.06e-06 6.79e-06 1.18e-05 1.12e-05 3.58e-06 2.27e-05 4.26e-06 6.94e-06 5.2e-06 1.31e-05 1.2e-05 8.58e-06 9.85e-07 1.15e-06 3.63e-06 6.28e-06 2.82e-06 1.77e-06 1.99e-06 2.01e-06 1.21e-06 9.4e-07 1.7e-05 1.63e-06 2.5e-07 7.94e-07 1.72e-06 1.93e-06 6.85e-07 4.89e-07