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Genes within 1Mb (chr1:45460766:A:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000070759 TESK2 -30397 sc-eQTL 5.27e-01 0.131 0.206 0.052 PB L2
ENSG00000070785 EIF2B3 474044 sc-eQTL 7.81e-01 -0.0488 0.176 0.052 PB L2
ENSG00000085998 POMGNT1 -759539 sc-eQTL 2.93e-01 -0.223 0.211 0.052 PB L2
ENSG00000086015 MAST2 -326221 sc-eQTL 1.50e-01 0.316 0.218 0.052 PB L2
ENSG00000117425 PTCH2 617513 sc-eQTL 4.32e-01 -0.159 0.201 0.052 PB L2
ENSG00000117448 AKR1A1 -89777 sc-eQTL 1.88e-01 0.15 0.113 0.052 PB L2
ENSG00000117450 PRDX1 -62281 sc-eQTL 5.86e-01 0.0561 0.103 0.052 PB L2
ENSG00000117481 NSUN4 -879411 sc-eQTL 9.64e-01 -0.011 0.242 0.052 PB L2
ENSG00000126088 UROD 449816 sc-eQTL 7.09e-01 0.0575 0.154 0.052 PB L2
ENSG00000126106 TMEM53 786285 sc-eQTL 2.88e-01 -0.218 0.204 0.052 PB L2
ENSG00000126107 HECTD3 449442 sc-eQTL 3.17e-03 0.493 0.163 0.052 PB L2
ENSG00000132128 LRRC41 -842842 sc-eQTL 1.49e-03 0.602 0.185 0.052 PB L2
ENSG00000132773 TOE1 120714 sc-eQTL 4.24e-01 -0.175 0.218 0.052 PB L2
ENSG00000132780 NASP -123080 sc-eQTL 8.93e-01 -0.0309 0.229 0.052 PB L2
ENSG00000132781 MUTYH 119873 sc-eQTL 4.25e-01 0.191 0.238 0.052 PB L2
ENSG00000142937 RPS8 685515 sc-eQTL 5.08e-01 0.0758 0.114 0.052 PB L2
ENSG00000159592 GPBP1L1 -227347 sc-eQTL 5.12e-01 -0.155 0.236 0.052 PB L2
ENSG00000159596 TMEM69 -227415 sc-eQTL 4.14e-01 -0.161 0.197 0.052 PB L2
ENSG00000173660 UQCRH -842932 sc-eQTL 5.17e-01 -0.0774 0.119 0.052 PB L2
ENSG00000173846 PLK3 660389 sc-eQTL 2.16e-01 -0.261 0.209 0.052 PB L2
ENSG00000197429 IPP -289887 sc-eQTL 3.80e-01 -0.197 0.223 0.052 PB L2
ENSG00000198520 ARMH1 786074 sc-eQTL 4.96e-01 0.126 0.184 0.052 PB L2
ENSG00000280670 CCDC163 -39313 sc-eQTL 4.71e-01 -0.127 0.176 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 -30397 eQTL 0.515 0.0238 0.0366 0.00127 0.0 0.0402
ENSG00000117450 PRDX1 -62281 eQTL 0.00103 0.0927 0.0282 0.00166 0.0 0.0402
ENSG00000126088 UROD 449816 pQTL 0.0298 0.0823 0.0378 0.0 0.0 0.0358
ENSG00000132763 MMACHC -39534 eQTL 1.03e-06 0.364 0.074 0.00737 0.00747 0.0402
ENSG00000159596 TMEM69 -227415 eQTL 2.03e-07 -0.278 0.0531 0.0 0.0 0.0402
ENSG00000222009 BTBD19 652284 eQTL 0.000543 -0.125 0.0359 0.0 0.0 0.0402
ENSG00000225721 AL592166.1 684956 eQTL 8.26e-06 0.389 0.0868 0.00184 0.00233 0.0402
ENSG00000234329 AL604028.2 -191060 eQTL 0.0097 0.157 0.0607 0.0 0.0 0.0402
ENSG00000280670 CCDC163 -39313 eQTL 2.55e-120 1.85 0.0684 0.0 0.0 0.0402

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000159596 TMEM69 -227415 1.63e-06 2.2e-06 2.52e-07 1.48e-06 4.68e-07 6.94e-07 1.25e-06 4.27e-07 1.71e-06 7.2e-07 1.93e-06 1.28e-06 3.28e-06 5.86e-07 3.4e-07 1e-06 1.09e-06 1.18e-06 5.23e-07 7.4e-07 7.41e-07 1.87e-06 1.46e-06 6.89e-07 2.51e-06 8.11e-07 1.03e-06 1.07e-06 1.72e-06 1.51e-06 7.67e-07 2.62e-07 3.97e-07 6.49e-07 7.57e-07 5.58e-07 7.29e-07 3.15e-07 6.79e-07 2.04e-07 3.04e-07 2.21e-06 3.52e-07 1.99e-07 2.85e-07 2.73e-07 2.27e-07 8.15e-08 1.82e-07
ENSG00000225721 AL592166.1 684956 3.21e-07 1.59e-07 6.55e-08 2.36e-07 1.05e-07 8.75e-08 2.24e-07 5.82e-08 1.66e-07 9.35e-08 1.76e-07 1.23e-07 2.55e-07 8.07e-08 5.62e-08 8.08e-08 5.42e-08 1.8e-07 7.29e-08 6.02e-08 1.22e-07 1.56e-07 1.64e-07 3.68e-08 2.28e-07 1.31e-07 1.19e-07 1.26e-07 1.37e-07 1.24e-07 1.26e-07 4.29e-08 4.23e-08 9.08e-08 4.78e-08 3.24e-08 6.24e-08 7.92e-08 6.45e-08 7.04e-08 5.71e-08 1.6e-07 3.99e-08 1.98e-08 3.87e-08 6.39e-09 8.61e-08 1.96e-09 4.85e-08
ENSG00000234329 AL604028.2 -191060 2.69e-06 2.61e-06 3.08e-07 2.03e-06 4.74e-07 8.21e-07 1.85e-06 5.72e-07 1.81e-06 8.34e-07 2.45e-06 1.35e-06 3.99e-06 1.43e-06 7.19e-07 1.22e-06 1.27e-06 1.99e-06 9.4e-07 1.27e-06 7.87e-07 2.61e-06 2.13e-06 1.01e-06 3.5e-06 1.21e-06 1.2e-06 1.46e-06 1.94e-06 1.79e-06 1.83e-06 2.69e-07 5.36e-07 1.23e-06 1.03e-06 7.45e-07 8.28e-07 3.86e-07 1.17e-06 3.8e-07 3.04e-07 3.16e-06 4.37e-07 1.89e-07 3.52e-07 3.46e-07 4.08e-07 2.51e-07 2.87e-07
ENSG00000280670 CCDC163 -39313 1.12e-05 1.32e-05 1.89e-06 7.29e-06 2.36e-06 5.26e-06 1.48e-05 2.23e-06 1.07e-05 5.42e-06 1.5e-05 6.06e-06 2.28e-05 4.48e-06 3.75e-06 6.7e-06 6.42e-06 9.52e-06 3.17e-06 3.17e-06 6.11e-06 1.1e-05 1.03e-05 3.43e-06 1.97e-05 4.35e-06 5.93e-06 4.83e-06 1.31e-05 1.1e-05 8.17e-06 1.05e-06 1.23e-06 3.54e-06 5.01e-06 2.62e-06 1.79e-06 2.06e-06 2.06e-06 1.2e-06 9.92e-07 1.59e-05 1.62e-06 1.33e-07 8.47e-07 1.81e-06 1.68e-06 7.15e-07 4.39e-07