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Genes within 1Mb (chr1:45458179:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000070759 TESK2 -32984 sc-eQTL 5.27e-01 0.131 0.206 0.052 PB L2
ENSG00000070785 EIF2B3 471457 sc-eQTL 7.81e-01 -0.0488 0.176 0.052 PB L2
ENSG00000085998 POMGNT1 -762126 sc-eQTL 2.93e-01 -0.223 0.211 0.052 PB L2
ENSG00000086015 MAST2 -328808 sc-eQTL 1.50e-01 0.316 0.218 0.052 PB L2
ENSG00000117425 PTCH2 614926 sc-eQTL 4.32e-01 -0.159 0.201 0.052 PB L2
ENSG00000117448 AKR1A1 -92364 sc-eQTL 1.88e-01 0.15 0.113 0.052 PB L2
ENSG00000117450 PRDX1 -64868 sc-eQTL 5.86e-01 0.0561 0.103 0.052 PB L2
ENSG00000117481 NSUN4 -881998 sc-eQTL 9.64e-01 -0.011 0.242 0.052 PB L2
ENSG00000126088 UROD 447229 sc-eQTL 7.09e-01 0.0575 0.154 0.052 PB L2
ENSG00000126106 TMEM53 783698 sc-eQTL 2.88e-01 -0.218 0.204 0.052 PB L2
ENSG00000126107 HECTD3 446855 sc-eQTL 3.17e-03 0.493 0.163 0.052 PB L2
ENSG00000132128 LRRC41 -845429 sc-eQTL 1.49e-03 0.602 0.185 0.052 PB L2
ENSG00000132773 TOE1 118127 sc-eQTL 4.24e-01 -0.175 0.218 0.052 PB L2
ENSG00000132780 NASP -125667 sc-eQTL 8.93e-01 -0.0309 0.229 0.052 PB L2
ENSG00000132781 MUTYH 117286 sc-eQTL 4.25e-01 0.191 0.238 0.052 PB L2
ENSG00000142937 RPS8 682928 sc-eQTL 5.08e-01 0.0758 0.114 0.052 PB L2
ENSG00000159592 GPBP1L1 -229934 sc-eQTL 5.12e-01 -0.155 0.236 0.052 PB L2
ENSG00000159596 TMEM69 -230002 sc-eQTL 4.14e-01 -0.161 0.197 0.052 PB L2
ENSG00000173660 UQCRH -845519 sc-eQTL 5.17e-01 -0.0774 0.119 0.052 PB L2
ENSG00000173846 PLK3 657802 sc-eQTL 2.16e-01 -0.261 0.209 0.052 PB L2
ENSG00000197429 IPP -292474 sc-eQTL 3.80e-01 -0.197 0.223 0.052 PB L2
ENSG00000198520 ARMH1 783487 sc-eQTL 4.96e-01 0.126 0.184 0.052 PB L2
ENSG00000280670 CCDC163 -41900 sc-eQTL 4.71e-01 -0.127 0.176 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 -32984 eQTL 0.515 0.0238 0.0366 0.00127 0.0 0.0402
ENSG00000117450 PRDX1 -64868 eQTL 0.00103 0.0927 0.0282 0.00166 0.0 0.0402
ENSG00000126088 UROD 447229 pQTL 0.0298 0.0823 0.0378 0.0 0.0 0.0358
ENSG00000132763 MMACHC -42121 eQTL 1.03e-06 0.364 0.074 0.00737 0.00747 0.0402
ENSG00000159596 TMEM69 -230002 eQTL 2.03e-07 -0.278 0.0531 0.0 0.0 0.0402
ENSG00000222009 BTBD19 649697 eQTL 0.000543 -0.125 0.0359 0.0 0.0 0.0402
ENSG00000225721 AL592166.1 682369 eQTL 8.26e-06 0.389 0.0868 0.00184 0.00232 0.0402
ENSG00000234329 AL604028.2 -193647 eQTL 0.0097 0.157 0.0607 0.0 0.0 0.0402
ENSG00000280670 CCDC163 -41900 eQTL 2.55e-120 1.85 0.0684 0.0 0.0 0.0402

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000159596 TMEM69 -230002 1.54e-06 1.55e-06 2.93e-07 1.53e-06 4.48e-07 7.48e-07 1.2e-06 4.35e-07 1.74e-06 7.36e-07 2.07e-06 1.26e-06 2.63e-06 4.66e-07 4.81e-07 9.98e-07 9.07e-07 1.09e-06 5.93e-07 5.11e-07 6.67e-07 1.97e-06 1.27e-06 8.07e-07 2.43e-06 7.38e-07 1.04e-06 9.19e-07 1.72e-06 1.3e-06 8.27e-07 2.2e-07 2.85e-07 6.25e-07 9.13e-07 5.26e-07 7.58e-07 3.81e-07 5.12e-07 2.03e-07 3.54e-07 2.12e-06 4.31e-07 1.91e-07 3.38e-07 2.88e-07 3.2e-07 2.25e-07 2.68e-07
ENSG00000225721 AL592166.1 682369 2.77e-07 1.33e-07 5.93e-08 2.25e-07 9.8e-08 8.63e-08 1.99e-07 5.75e-08 1.47e-07 6.75e-08 1.73e-07 1.19e-07 1.87e-07 7.95e-08 5.98e-08 7.23e-08 4.09e-08 1.44e-07 7.09e-08 5.33e-08 1.27e-07 1.25e-07 1.58e-07 3.58e-08 1.68e-07 1.26e-07 1.17e-07 9.74e-08 1.26e-07 1.03e-07 1.06e-07 4.23e-08 3.59e-08 9.58e-08 6.25e-08 2.68e-08 4.28e-08 6.66e-08 6.21e-08 4.24e-08 4.92e-08 1.46e-07 3.25e-08 1.14e-08 3.55e-08 8.31e-09 1e-07 0.0 4.98e-08
ENSG00000234329 AL604028.2 -193647 2.28e-06 2.59e-06 3.44e-07 1.98e-06 4.8e-07 7.99e-07 1.9e-06 5.85e-07 1.7e-06 8.46e-07 2.02e-06 1.29e-06 3.53e-06 1.23e-06 4.97e-07 1.21e-06 1.12e-06 1.55e-06 7.31e-07 1.15e-06 9.06e-07 2.34e-06 2e-06 1.07e-06 3.36e-06 1.05e-06 1.27e-06 1.04e-06 1.92e-06 1.64e-06 1.16e-06 4.17e-07 3.75e-07 1.25e-06 1.45e-06 6.79e-07 7.01e-07 4.74e-07 9.3e-07 3.66e-07 2.44e-07 3.35e-06 6.27e-07 1.81e-07 2.91e-07 3.21e-07 6.75e-07 2.63e-07 1.68e-07
ENSG00000280670 CCDC163 -41900 1.48e-05 1.55e-05 2.64e-06 9.25e-06 2.97e-06 6.99e-06 2.15e-05 2.78e-06 1.48e-05 7.27e-06 1.9e-05 7.68e-06 2.5e-05 5.81e-06 4.49e-06 9.16e-06 7.91e-06 1.25e-05 3.74e-06 3.86e-06 7.56e-06 1.39e-05 1.48e-05 4.69e-06 2.49e-05 5.11e-06 7.7e-06 6.65e-06 1.65e-05 1.27e-05 1.04e-05 1.18e-06 1.43e-06 4.03e-06 6.62e-06 3.29e-06 1.7e-06 2.39e-06 2.59e-06 1.89e-06 1.19e-06 1.86e-05 2.46e-06 2.62e-07 1.76e-06 2.32e-06 2.62e-06 1.2e-06 8.3e-07