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Genes within 1Mb (chr1:45434518:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000070759 TESK2 -56645 sc-eQTL 5.27e-01 0.131 0.206 0.052 PB L2
ENSG00000070785 EIF2B3 447796 sc-eQTL 7.81e-01 -0.0488 0.176 0.052 PB L2
ENSG00000085998 POMGNT1 -785787 sc-eQTL 2.93e-01 -0.223 0.211 0.052 PB L2
ENSG00000086015 MAST2 -352469 sc-eQTL 1.50e-01 0.316 0.218 0.052 PB L2
ENSG00000117425 PTCH2 591265 sc-eQTL 4.32e-01 -0.159 0.201 0.052 PB L2
ENSG00000117448 AKR1A1 -116025 sc-eQTL 1.88e-01 0.15 0.113 0.052 PB L2
ENSG00000117450 PRDX1 -88529 sc-eQTL 5.86e-01 0.0561 0.103 0.052 PB L2
ENSG00000117481 NSUN4 -905659 sc-eQTL 9.64e-01 -0.011 0.242 0.052 PB L2
ENSG00000126088 UROD 423568 sc-eQTL 7.09e-01 0.0575 0.154 0.052 PB L2
ENSG00000126106 TMEM53 760037 sc-eQTL 2.88e-01 -0.218 0.204 0.052 PB L2
ENSG00000126107 HECTD3 423194 sc-eQTL 3.17e-03 0.493 0.163 0.052 PB L2
ENSG00000132128 LRRC41 -869090 sc-eQTL 1.49e-03 0.602 0.185 0.052 PB L2
ENSG00000132773 TOE1 94466 sc-eQTL 4.24e-01 -0.175 0.218 0.052 PB L2
ENSG00000132780 NASP -149328 sc-eQTL 8.93e-01 -0.0309 0.229 0.052 PB L2
ENSG00000132781 MUTYH 93625 sc-eQTL 4.25e-01 0.191 0.238 0.052 PB L2
ENSG00000142937 RPS8 659267 sc-eQTL 5.08e-01 0.0758 0.114 0.052 PB L2
ENSG00000159592 GPBP1L1 -253595 sc-eQTL 5.12e-01 -0.155 0.236 0.052 PB L2
ENSG00000159596 TMEM69 -253663 sc-eQTL 4.14e-01 -0.161 0.197 0.052 PB L2
ENSG00000173660 UQCRH -869180 sc-eQTL 5.17e-01 -0.0774 0.119 0.052 PB L2
ENSG00000173846 PLK3 634141 sc-eQTL 2.16e-01 -0.261 0.209 0.052 PB L2
ENSG00000197429 IPP -316135 sc-eQTL 3.80e-01 -0.197 0.223 0.052 PB L2
ENSG00000198520 ARMH1 759826 sc-eQTL 4.96e-01 0.126 0.184 0.052 PB L2
ENSG00000280670 CCDC163 -65561 sc-eQTL 4.71e-01 -0.127 0.176 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 -56645 eQTL 0.513 0.024 0.0367 0.00126 0.0 0.0402
ENSG00000117450 PRDX1 -88529 eQTL 0.00103 0.0928 0.0282 0.00167 0.0 0.0402
ENSG00000126088 UROD 423568 pQTL 0.0298 0.0824 0.0379 0.0 0.0 0.0358
ENSG00000132763 MMACHC -65782 eQTL 1.02e-06 0.365 0.0741 0.00742 0.00756 0.0402
ENSG00000159596 TMEM69 -253663 eQTL 2.04e-07 -0.278 0.0532 0.0 0.0 0.0402
ENSG00000222009 BTBD19 626036 eQTL 0.000534 -0.125 0.0359 0.0 0.0 0.0402
ENSG00000225721 AL592166.1 658708 eQTL 8.6e-06 0.389 0.0869 0.00176 0.00225 0.0402
ENSG00000234329 AL604028.2 -217308 eQTL 0.00966 0.158 0.0608 0.0 0.0 0.0402
ENSG00000280670 CCDC163 -65561 eQTL 2.22e-120 1.86 0.0685 0.0 0.0 0.0402

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000159596 TMEM69 -253663 1.9e-06 2.35e-06 3.31e-07 1.42e-06 6.03e-07 6.91e-07 1.29e-06 6.41e-07 1.72e-06 7.73e-07 1.97e-06 1.47e-06 3.22e-06 8.7e-07 7.19e-07 1.62e-06 9.73e-07 1.92e-06 6.96e-07 1.14e-06 9.48e-07 2.32e-06 1.78e-06 9.81e-07 2.57e-06 1.37e-06 1.29e-06 1.49e-06 1.88e-06 1.58e-06 9.11e-07 3.05e-07 5.52e-07 1.25e-06 9.04e-07 9.86e-07 8.3e-07 3.84e-07 9.35e-07 4.16e-07 2.23e-07 2.7e-06 4.26e-07 1.74e-07 3.14e-07 3.46e-07 4.86e-07 2.65e-07 1.57e-07
ENSG00000225721 AL592166.1 658708 6.33e-07 3.11e-07 1.03e-07 2.58e-07 9.26e-08 1.32e-07 4.09e-07 9.69e-08 3.17e-07 1.89e-07 3.97e-07 2.98e-07 5.09e-07 9.48e-08 1.5e-07 2.08e-07 1.35e-07 3.39e-07 1.5e-07 9.01e-08 1.68e-07 2.86e-07 2.63e-07 1.04e-07 4.88e-07 2.46e-07 2.22e-07 2.18e-07 2.66e-07 2.52e-07 1.95e-07 8.25e-08 5.86e-08 1.21e-07 1.97e-07 6.18e-08 7.63e-08 5.53e-08 5.98e-08 5.32e-08 8.29e-08 2.9e-07 3.09e-08 7.23e-09 9.15e-08 9.49e-09 1.05e-07 0.0 5.35e-08
ENSG00000234329 AL604028.2 -217308 2.69e-06 2.63e-06 4.93e-07 1.71e-06 8.67e-07 8.62e-07 2.07e-06 8.83e-07 2.24e-06 1.21e-06 2.48e-06 1.45e-06 3.5e-06 1.37e-06 9.02e-07 2.01e-06 1.27e-06 2.19e-06 1.49e-06 1.21e-06 1.39e-06 3.15e-06 2.58e-06 1.64e-06 3.88e-06 1.26e-06 1.55e-06 1.7e-06 2.76e-06 1.89e-06 1.83e-06 4.53e-07 6.07e-07 1.32e-06 1.31e-06 9.53e-07 9.09e-07 4.74e-07 1.28e-06 3.99e-07 4.48e-07 3.31e-06 5.13e-07 1.81e-07 3.82e-07 4.02e-07 8.93e-07 1.82e-07 3.52e-07
ENSG00000280670 CCDC163 -65561 8.53e-06 9.55e-06 1.76e-06 5.59e-06 2.33e-06 4.23e-06 1.09e-05 2.16e-06 9.72e-06 5.42e-06 1.23e-05 5.44e-06 1.55e-05 3.77e-06 3.01e-06 6.75e-06 4.57e-06 8.09e-06 3.2e-06 3.13e-06 6.52e-06 9.68e-06 8.88e-06 3.88e-06 1.52e-05 4.33e-06 6.2e-06 4.77e-06 1.2e-05 9.7e-06 5.46e-06 1.09e-06 1.48e-06 3.8e-06 4.55e-06 3.17e-06 1.79e-06 1.98e-06 2.23e-06 1.74e-06 1.67e-06 1.25e-05 1.43e-06 3.6e-07 1.35e-06 1.75e-06 1.82e-06 6.86e-07 9.21e-07