Genes within 1Mb (chr1:45433744:A:G):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000070759 TESK2 -57419 sc-eQTL 5.27e-01 0.131 0.206 0.052 PB L2
ENSG00000070785 EIF2B3 447022 sc-eQTL 7.81e-01 -0.0488 0.176 0.052 PB L2
ENSG00000085998 POMGNT1 -786561 sc-eQTL 2.93e-01 -0.223 0.211 0.052 PB L2
ENSG00000086015 MAST2 -353243 sc-eQTL 1.50e-01 0.316 0.218 0.052 PB L2
ENSG00000117425 PTCH2 590491 sc-eQTL 4.32e-01 -0.159 0.201 0.052 PB L2
ENSG00000117448 AKR1A1 -116799 sc-eQTL 1.88e-01 0.15 0.113 0.052 PB L2
ENSG00000117450 PRDX1 -89303 sc-eQTL 5.86e-01 0.0561 0.103 0.052 PB L2
ENSG00000117481 NSUN4 -906433 sc-eQTL 9.64e-01 -0.011 0.242 0.052 PB L2
ENSG00000126088 UROD 422794 sc-eQTL 7.09e-01 0.0575 0.154 0.052 PB L2
ENSG00000126106 TMEM53 759263 sc-eQTL 2.88e-01 -0.218 0.204 0.052 PB L2
ENSG00000126107 HECTD3 422420 sc-eQTL 3.17e-03 0.493 0.163 0.052 PB L2
ENSG00000132128 LRRC41 -869864 sc-eQTL 1.49e-03 0.602 0.185 0.052 PB L2
ENSG00000132773 TOE1 93692 sc-eQTL 4.24e-01 -0.175 0.218 0.052 PB L2
ENSG00000132780 NASP -150102 sc-eQTL 8.93e-01 -0.0309 0.229 0.052 PB L2
ENSG00000132781 MUTYH 92851 sc-eQTL 4.25e-01 0.191 0.238 0.052 PB L2
ENSG00000142937 RPS8 658493 sc-eQTL 5.08e-01 0.0758 0.114 0.052 PB L2
ENSG00000159592 GPBP1L1 -254369 sc-eQTL 5.12e-01 -0.155 0.236 0.052 PB L2
ENSG00000159596 TMEM69 -254437 sc-eQTL 4.14e-01 -0.161 0.197 0.052 PB L2
ENSG00000173660 UQCRH -869954 sc-eQTL 5.17e-01 -0.0774 0.119 0.052 PB L2
ENSG00000173846 PLK3 633367 sc-eQTL 2.16e-01 -0.261 0.209 0.052 PB L2
ENSG00000197429 IPP -316909 sc-eQTL 3.80e-01 -0.197 0.223 0.052 PB L2
ENSG00000198520 ARMH1 759052 sc-eQTL 4.96e-01 0.126 0.184 0.052 PB L2
ENSG00000280670 CCDC163 -66335 sc-eQTL 4.71e-01 -0.127 0.176 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 -57419 eQTL 0.516 0.0238 0.0366 0.00127 0.0 0.0402
ENSG00000117450 PRDX1 -89303 eQTL 0.00104 0.0927 0.0282 0.00165 0.0 0.0402
ENSG00000126088 UROD 422794 pQTL 0.0288 0.0829 0.0379 0.0 0.0 0.0358
ENSG00000132763 MMACHC -66556 eQTL 1.02e-06 0.364 0.074 0.0074 0.0075 0.0402
ENSG00000159596 TMEM69 -254437 eQTL 2.02e-07 -0.278 0.0531 0.0 0.0 0.0402
ENSG00000222009 BTBD19 625262 eQTL 0.00054 -0.125 0.0359 0.0 0.0 0.0402
ENSG00000225721 AL592166.1 657934 eQTL 8.22e-06 0.389 0.0868 0.00185 0.00233 0.0402
ENSG00000234329 AL604028.2 -218082 eQTL 0.00968 0.157 0.0607 0.0 0.0 0.0402
ENSG00000280670 CCDC163 -66335 eQTL 2.58e-120 1.85 0.0684 0.0 0.0 0.0402


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000159596 TMEM69 -254437 4.36e-06 4.7e-06 6.5e-07 2.43e-06 1.49e-06 1.19e-06 4.17e-06 1.17e-06 4.92e-06 2.33e-06 4.38e-06 3.36e-06 7.24e-06 2.35e-06 1.33e-06 4.02e-06 1.78e-06 3.43e-06 1.45e-06 1.58e-06 2.71e-06 4.95e-06 3.54e-06 1.55e-06 5.37e-06 2.05e-06 2.27e-06 1.52e-06 4.5e-06 4.16e-06 2.17e-06 5.84e-07 7.82e-07 1.82e-06 2.13e-06 1.35e-06 1.02e-06 4.38e-07 8.77e-07 1.03e-06 9.26e-07 4.56e-06 3.64e-07 1.79e-07 7.83e-07 6.92e-07 9.92e-07 6.9e-07 4.27e-07
ENSG00000225721 AL592166.1 657934 1.26e-06 8.81e-07 2.56e-07 3.71e-07 3.51e-07 3.2e-07 9.97e-07 3.28e-07 1.09e-06 3.13e-07 1.15e-06 5.73e-07 1.43e-06 2.29e-07 4.26e-07 7.78e-07 7.77e-07 5.66e-07 5.29e-07 6.76e-07 3.87e-07 9.92e-07 6.18e-07 4.87e-07 1.72e-06 3.71e-07 6.16e-07 5.78e-07 8.47e-07 9.93e-07 4.59e-07 1.58e-07 2.33e-07 4.04e-07 3.54e-07 4.34e-07 3.79e-07 1.5e-07 1.73e-07 2.76e-07 2.85e-07 9.59e-07 6.28e-08 1.22e-08 1.67e-07 4.38e-08 1.62e-07 8.16e-08 1.93e-07
ENSG00000234329 AL604028.2 -218082 4.9e-06 4.88e-06 1.04e-06 3.09e-06 1.94e-06 1.76e-06 6.12e-06 1.26e-06 4.98e-06 2.97e-06 5.73e-06 3.26e-06 7.51e-06 1.92e-06 9.49e-07 4.61e-06 2.2e-06 3.84e-06 2.1e-06 2.44e-06 2.92e-06 5.51e-06 4.44e-06 1.95e-06 7.97e-06 2.25e-06 3.09e-06 1.75e-06 5.1e-06 4.99e-06 2.89e-06 8.78e-07 9.52e-07 2.62e-06 1.97e-06 2.09e-06 1.41e-06 6.18e-07 1.36e-06 9.9e-07 1.16e-06 5.56e-06 4.91e-07 2.07e-07 6.87e-07 1.12e-06 1.08e-06 6.73e-07 4.52e-07
ENSG00000280670 CCDC163 -66335 1.26e-05 1.26e-05 3.05e-06 8.95e-06 3.29e-06 6.33e-06 1.91e-05 3.39e-06 1.4e-05 6.93e-06 1.79e-05 6.94e-06 2.52e-05 5.17e-06 4.71e-06 9.88e-06 7.73e-06 1.35e-05 6e-06 5.26e-06 8.4e-06 1.36e-05 1.36e-05 6.27e-06 2.58e-05 5.36e-06 7.98e-06 7.35e-06 1.66e-05 1.69e-05 8.77e-06 1.65e-06 2.45e-06 6.29e-06 7.51e-06 4.91e-06 3.32e-06 2.86e-06 4e-06 3.57e-06 1.88e-06 1.69e-05 2.23e-06 5.82e-07 2.04e-06 2.68e-06 2.95e-06 1.5e-06 1.51e-06