logo

Genes within 1Mb (chr1:45301308:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000070759 TESK2 -189855 sc-eQTL 8.31e-03 0.53 0.199 0.051 cDC L2
ENSG00000070785 EIF2B3 314586 sc-eQTL 3.64e-01 0.177 0.195 0.051 cDC L2
ENSG00000085998 POMGNT1 -918997 sc-eQTL 5.53e-01 0.122 0.205 0.051 cDC L2
ENSG00000086015 MAST2 -485679 sc-eQTL 7.00e-01 0.0701 0.182 0.051 cDC L2
ENSG00000117419 ERI3 946048 sc-eQTL 8.28e-01 -0.0461 0.212 0.051 cDC L2
ENSG00000117425 PTCH2 458055 sc-eQTL 1.15e-01 0.275 0.174 0.051 cDC L2
ENSG00000117448 AKR1A1 -249235 sc-eQTL 2.75e-01 -0.212 0.194 0.051 cDC L2
ENSG00000117450 PRDX1 -221739 sc-eQTL 4.93e-01 0.0993 0.144 0.051 cDC L2
ENSG00000126088 UROD 290358 sc-eQTL 7.97e-01 0.051 0.198 0.051 cDC L2
ENSG00000126106 TMEM53 626827 sc-eQTL 9.90e-01 -0.00244 0.191 0.051 cDC L2
ENSG00000126107 HECTD3 289984 sc-eQTL 1.40e-01 -0.332 0.224 0.051 cDC L2
ENSG00000132773 TOE1 -38744 sc-eQTL 8.43e-02 0.38 0.219 0.051 cDC L2
ENSG00000132780 NASP -282538 sc-eQTL 4.24e-01 0.16 0.2 0.051 cDC L2
ENSG00000132781 MUTYH -39585 sc-eQTL 5.05e-01 0.137 0.206 0.051 cDC L2
ENSG00000142937 RPS8 526057 sc-eQTL 7.62e-01 0.0289 0.0951 0.051 cDC L2
ENSG00000159592 GPBP1L1 -386805 sc-eQTL 8.46e-01 -0.0403 0.207 0.051 cDC L2
ENSG00000159596 TMEM69 -386873 sc-eQTL 9.45e-02 -0.347 0.206 0.051 cDC L2
ENSG00000173846 PLK3 500931 sc-eQTL 2.33e-01 0.166 0.138 0.051 cDC L2
ENSG00000187147 RNF220 896114 sc-eQTL 1.52e-03 0.575 0.179 0.051 cDC L2
ENSG00000197429 IPP -449345 sc-eQTL 1.45e-01 -0.253 0.173 0.051 cDC L2
ENSG00000198520 ARMH1 626616 sc-eQTL 9.33e-01 0.0183 0.216 0.051 cDC L2
ENSG00000222009 BTBD19 492826 sc-eQTL 4.65e-01 -0.141 0.193 0.051 cDC L2
ENSG00000070759 TESK2 -189855 sc-eQTL 3.85e-02 0.458 0.219 0.051 pDC L2
ENSG00000070785 EIF2B3 314586 sc-eQTL 4.45e-01 0.175 0.229 0.051 pDC L2
ENSG00000085998 POMGNT1 -918997 sc-eQTL 6.11e-01 -0.0932 0.183 0.051 pDC L2
ENSG00000086015 MAST2 -485679 sc-eQTL 4.10e-01 -0.149 0.181 0.051 pDC L2
ENSG00000117419 ERI3 946048 sc-eQTL 7.20e-01 0.0783 0.218 0.051 pDC L2
ENSG00000117425 PTCH2 458055 sc-eQTL 9.69e-01 -0.00686 0.179 0.051 pDC L2
ENSG00000117448 AKR1A1 -249235 sc-eQTL 1.01e-01 -0.318 0.192 0.051 pDC L2
ENSG00000117450 PRDX1 -221739 sc-eQTL 3.15e-01 0.175 0.174 0.051 pDC L2
ENSG00000126088 UROD 290358 sc-eQTL 1.18e-01 -0.337 0.214 0.051 pDC L2
ENSG00000126106 TMEM53 626827 sc-eQTL 7.57e-02 0.334 0.187 0.051 pDC L2
ENSG00000126107 HECTD3 289984 sc-eQTL 1.63e-01 -0.314 0.224 0.051 pDC L2
ENSG00000132773 TOE1 -38744 sc-eQTL 6.53e-01 -0.103 0.228 0.051 pDC L2
ENSG00000132780 NASP -282538 sc-eQTL 8.01e-01 0.0462 0.183 0.051 pDC L2
ENSG00000132781 MUTYH -39585 sc-eQTL 8.34e-01 0.0418 0.199 0.051 pDC L2
ENSG00000142937 RPS8 526057 sc-eQTL 3.69e-01 0.116 0.128 0.051 pDC L2
ENSG00000159592 GPBP1L1 -386805 sc-eQTL 2.87e-02 0.476 0.215 0.051 pDC L2
ENSG00000159596 TMEM69 -386873 sc-eQTL 3.98e-02 -0.422 0.203 0.051 pDC L2
ENSG00000173846 PLK3 500931 sc-eQTL 5.36e-01 0.108 0.173 0.051 pDC L2
ENSG00000187147 RNF220 896114 sc-eQTL 5.17e-01 0.135 0.208 0.051 pDC L2
ENSG00000197429 IPP -449345 sc-eQTL 2.82e-01 -0.222 0.206 0.051 pDC L2
ENSG00000198520 ARMH1 626616 sc-eQTL 2.80e-01 0.217 0.2 0.051 pDC L2
ENSG00000222009 BTBD19 492826 sc-eQTL 7.17e-01 -0.0798 0.22 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000086015 MAST2 -485679 eQTL 1.35e-10 0.306 0.0471 0.0 0.0 0.0427
ENSG00000117450 PRDX1 -221739 pQTL 0.011 -0.106 0.0416 0.00158 0.0 0.043
ENSG00000126088 UROD 290358 pQTL 0.000355 0.128 0.0358 0.0 0.0 0.043
ENSG00000132773 TOE1 -38744 eQTL 0.000772 -0.109 0.0322 0.00435 0.00411 0.0427
ENSG00000132780 NASP -282538 eQTL 4.67e-08 -0.214 0.0388 0.0 0.0 0.0427
ENSG00000159588 CCDC17 -322749 eQTL 1.97e-11 -0.23 0.0339 0.0 0.0 0.0427
ENSG00000159592 GPBP1L1 -386805 eQTL 0.0186 0.0615 0.0261 0.0 0.0 0.0427
ENSG00000197429 IPP -449342 eQTL 0.0183 -0.117 0.0495 0.0 0.0 0.0427
ENSG00000222009 BTBD19 492826 eQTL 0.00235 -0.109 0.0358 0.0 0.0 0.0427
ENSG00000234329 AL604028.2 -350518 eQTL 0.0317 -0.13 0.0606 0.0 0.0 0.0427
ENSG00000281912 LINC01144 -2602 eQTL 0.0118 0.207 0.082 0.0 0.0 0.0427

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina