Genes within 1Mb (chr1:45299131:C:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000070759 TESK2 -192032 sc-eQTL 8.67e-03 0.532 0.2 0.051 cDC L2
ENSG00000070785 EIF2B3 312409 sc-eQTL 1.94e-01 0.255 0.196 0.051 cDC L2
ENSG00000085998 POMGNT1 -921174 sc-eQTL 6.93e-01 0.0818 0.207 0.051 cDC L2
ENSG00000086015 MAST2 -487856 sc-eQTL 8.76e-01 0.0287 0.184 0.051 cDC L2
ENSG00000117419 ERI3 943871 sc-eQTL 5.44e-01 -0.13 0.214 0.051 cDC L2
ENSG00000117425 PTCH2 455878 sc-eQTL 1.49e-01 0.254 0.175 0.051 cDC L2
ENSG00000117448 AKR1A1 -251412 sc-eQTL 9.55e-01 -0.0112 0.196 0.051 cDC L2
ENSG00000117450 PRDX1 -223916 sc-eQTL 2.87e-01 0.155 0.145 0.051 cDC L2
ENSG00000126088 UROD 288181 sc-eQTL 9.51e-01 -0.0122 0.2 0.051 cDC L2
ENSG00000126106 TMEM53 624650 sc-eQTL 9.32e-01 -0.0164 0.192 0.051 cDC L2
ENSG00000126107 HECTD3 287807 sc-eQTL 1.52e-01 -0.325 0.226 0.051 cDC L2
ENSG00000132773 TOE1 -40921 sc-eQTL 2.53e-01 0.255 0.222 0.051 cDC L2
ENSG00000132780 NASP -284715 sc-eQTL 4.49e-01 0.153 0.202 0.051 cDC L2
ENSG00000132781 MUTYH -41762 sc-eQTL 8.66e-01 0.0351 0.208 0.051 cDC L2
ENSG00000142937 RPS8 523880 sc-eQTL 6.66e-01 0.0415 0.0959 0.051 cDC L2
ENSG00000159592 GPBP1L1 -388982 sc-eQTL 9.41e-01 0.0155 0.208 0.051 cDC L2
ENSG00000159596 TMEM69 -389050 sc-eQTL 2.33e-02 -0.473 0.207 0.051 cDC L2
ENSG00000173846 PLK3 498754 sc-eQTL 2.29e-01 0.168 0.14 0.051 cDC L2
ENSG00000187147 RNF220 893937 sc-eQTL 7.13e-03 0.494 0.182 0.051 cDC L2
ENSG00000197429 IPP -451522 sc-eQTL 7.36e-02 -0.313 0.174 0.051 cDC L2
ENSG00000198520 ARMH1 624439 sc-eQTL 7.25e-01 0.0765 0.218 0.051 cDC L2
ENSG00000222009 BTBD19 490649 sc-eQTL 5.79e-01 -0.108 0.195 0.051 cDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000086015 MAST2 -487856 eQTL 5.44e-11 0.326 0.0491 0.0 0.0 0.0397
ENSG00000117450 PRDX1 -223916 pQTL 0.0142 -0.108 0.044 0.00134 0.0 0.0387
ENSG00000126088 UROD 288181 pQTL 6.33e-06 0.171 0.0377 0.0 0.0 0.0387
ENSG00000126088 UROD 288181 eQTL 0.0334 0.113 0.0529 0.0 0.0 0.0397
ENSG00000132773 TOE1 -40921 eQTL 0.00378 -0.0977 0.0336 0.00114 0.00108 0.0397
ENSG00000132780 NASP -284715 eQTL 5.62e-07 -0.205 0.0406 0.0 0.0 0.0397
ENSG00000132781 MUTYH -41339 eQTL 0.0381 0.0695 0.0335 0.0 0.0 0.0397
ENSG00000159588 CCDC17 -324926 eQTL 2.11e-11 -0.24 0.0354 0.0 0.0 0.0397
ENSG00000162415 ZSWIM5 -7078 eQTL 0.0165 -0.128 0.0533 0.0 0.0 0.0397
ENSG00000197429 IPP -451519 eQTL 0.00969 -0.134 0.0516 0.0 0.0 0.0397
ENSG00000222009 BTBD19 490649 eQTL 0.000115 -0.144 0.0372 0.0 0.0 0.0397
ENSG00000234329 AL604028.2 -352695 eQTL 0.0312 -0.136 0.0632 0.0 0.0 0.0397
ENSG00000281912 LINC01144 -4779 eQTL 0.0104 0.22 0.0855 0.0 0.0 0.0397


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000086015 MAST2 -487856 8.25e-07 6.26e-07 1.07e-07 4.34e-07 9.33e-08 2.54e-07 5.13e-07 8.37e-08 4.3e-07 2.43e-07 5.29e-07 3.91e-07 8.16e-07 1.52e-07 2.57e-07 1.96e-07 1.69e-07 3.67e-07 1.97e-07 1.65e-07 1.68e-07 3.49e-07 3.04e-07 1.25e-07 7.94e-07 2.2e-07 3.04e-07 2.7e-07 2.98e-07 4.9e-07 3.56e-07 4.25e-08 4.28e-08 1.5e-07 3.52e-07 1.49e-07 8.28e-08 9.58e-08 5.93e-08 2.26e-08 9.99e-08 4.55e-07 4.65e-08 1.22e-08 1.41e-07 1.48e-08 8.24e-08 2.41e-08 6.36e-08
ENSG00000117425 \N 455878 9.83e-07 7.56e-07 1.2e-07 4.06e-07 1.07e-07 3.24e-07 5.82e-07 1.03e-07 5.88e-07 2.88e-07 7.44e-07 5.01e-07 9.79e-07 1.59e-07 3.16e-07 2.45e-07 2.77e-07 4.2e-07 2.65e-07 1.97e-07 1.92e-07 4.14e-07 3.77e-07 1.71e-07 1.06e-06 2.42e-07 4.16e-07 3.18e-07 3.88e-07 6.35e-07 4.02e-07 3.72e-08 5.63e-08 1.77e-07 3.66e-07 1.85e-07 1.31e-07 9.84e-08 7.54e-08 8.66e-09 1.02e-07 5.96e-07 6.04e-08 1.92e-08 1.78e-07 3.46e-08 1.18e-07 4.41e-08 6.12e-08
ENSG00000126088 UROD 288181 1.39e-06 1.84e-06 2.99e-07 1.36e-06 3.68e-07 6.63e-07 1.48e-06 3.97e-07 1.74e-06 6.94e-07 2.08e-06 1.12e-06 2.7e-06 4.66e-07 3.98e-07 9.92e-07 8.85e-07 9.65e-07 6.79e-07 4.4e-07 7.49e-07 1.89e-06 1.05e-06 5.48e-07 2.33e-06 5.67e-07 1.03e-06 8.48e-07 1.59e-06 1.31e-06 7.52e-07 2.66e-07 3e-07 5.4e-07 7.08e-07 5.32e-07 6.93e-07 3.63e-07 5.11e-07 2.23e-07 2.56e-07 1.73e-06 3.37e-07 1.91e-07 2.87e-07 2.88e-07 2.43e-07 1.57e-07 2.61e-07
ENSG00000132773 TOE1 -40921 1.49e-05 1.9e-05 2.65e-06 1.01e-05 2.7e-06 6.86e-06 2.09e-05 2.9e-06 1.65e-05 8.22e-06 2.06e-05 7.68e-06 2.86e-05 6.49e-06 5.11e-06 9.37e-06 8.25e-06 1.25e-05 4.16e-06 4.09e-06 7.43e-06 1.62e-05 1.57e-05 4.74e-06 2.71e-05 5.12e-06 7.96e-06 7.23e-06 1.65e-05 1.4e-05 1.16e-05 1.05e-06 1.36e-06 4.04e-06 7.35e-06 3.41e-06 1.68e-06 2.4e-06 2.84e-06 2.17e-06 1.12e-06 2.05e-05 2.39e-06 2.62e-07 1.09e-06 2.49e-06 2.4e-06 9.54e-07 8.26e-07
ENSG00000132780 NASP -284715 1.32e-06 1.95e-06 2.9e-07 1.26e-06 3.86e-07 6.48e-07 1.5e-06 3.71e-07 1.69e-06 7.11e-07 2e-06 1.2e-06 2.57e-06 5.06e-07 3.63e-07 9.51e-07 9.15e-07 1.06e-06 5.99e-07 4.74e-07 7.95e-07 1.89e-06 1.12e-06 5.58e-07 2.36e-06 6.01e-07 1.02e-06 8.86e-07 1.62e-06 1.34e-06 7.9e-07 2.82e-07 2.64e-07 5.61e-07 8.07e-07 5.24e-07 6.99e-07 3.43e-07 5.05e-07 2.26e-07 2.58e-07 1.86e-06 3.68e-07 2.07e-07 3.14e-07 3.19e-07 2.46e-07 1.7e-07 2.76e-07
ENSG00000159588 CCDC17 -324926 1.24e-06 1.08e-06 3.21e-07 1.25e-06 3.48e-07 6.05e-07 1.47e-06 3.26e-07 1.49e-06 5.19e-07 1.65e-06 7.5e-07 2.31e-06 2.83e-07 5.4e-07 8.28e-07 7.97e-07 6.5e-07 8.26e-07 6.34e-07 4.43e-07 1.45e-06 8.96e-07 6.23e-07 2.23e-06 3.66e-07 9.18e-07 7.09e-07 1.24e-06 1.29e-06 7.84e-07 2.7e-07 1.98e-07 6.95e-07 5.49e-07 4.62e-07 5.58e-07 2.39e-07 4.04e-07 2.98e-07 2.92e-07 1.43e-06 1.41e-07 1.32e-07 1.9e-07 1.71e-07 2.29e-07 4.88e-08 1.58e-07
ENSG00000159592 \N -388982 1.26e-06 9.19e-07 2.84e-07 6.06e-07 1.79e-07 4.43e-07 7.53e-07 2.04e-07 1.11e-06 3.64e-07 1.11e-06 5.82e-07 1.54e-06 2.61e-07 4.12e-07 4.29e-07 6.07e-07 5.26e-07 3.77e-07 4.32e-07 2.43e-07 7.26e-07 5.66e-07 3.29e-07 1.74e-06 2.64e-07 6.16e-07 4.96e-07 6.84e-07 9.25e-07 5.2e-07 1.58e-07 1.21e-07 3.82e-07 4.22e-07 3.95e-07 3.26e-07 1.56e-07 1.41e-07 9.03e-08 2.38e-07 1.08e-06 5.41e-08 6.41e-08 1.69e-07 7.91e-08 1.71e-07 8.96e-08 9.42e-08
ENSG00000162415 ZSWIM5 -7078 3.44e-05 3.14e-05 6.15e-06 1.55e-05 5.71e-06 1.37e-05 4.36e-05 4.46e-06 2.98e-05 1.52e-05 3.73e-05 1.63e-05 4.7e-05 1.35e-05 7.03e-06 1.84e-05 1.61e-05 2.42e-05 7.83e-06 6.75e-06 1.49e-05 3.22e-05 3.06e-05 9.09e-06 4.3e-05 7.81e-06 1.38e-05 1.26e-05 3.11e-05 2.61e-05 1.96e-05 1.64e-06 2.57e-06 7.1e-06 1.15e-05 5.77e-06 3.11e-06 3.15e-06 4.84e-06 3.56e-06 1.76e-06 3.78e-05 3.5e-06 3.66e-07 2.45e-06 3.9e-06 4.09e-06 1.57e-06 1.54e-06
ENSG00000281912 LINC01144 -4779 3.49e-05 3.22e-05 6.4e-06 1.56e-05 5.98e-06 1.42e-05 4.51e-05 4.65e-06 3.08e-05 1.53e-05 3.78e-05 1.72e-05 4.8e-05 1.4e-05 7.12e-06 1.92e-05 1.7e-05 2.52e-05 7.92e-06 7.1e-06 1.56e-05 3.34e-05 3.15e-05 9.68e-06 4.44e-05 8.09e-06 1.42e-05 1.28e-05 3.19e-05 2.81e-05 2.03e-05 1.68e-06 2.8e-06 7.48e-06 1.2e-05 5.99e-06 3.39e-06 3.26e-06 5.08e-06 3.57e-06 1.66e-06 3.81e-05 3.58e-06 3.99e-07 2.63e-06 4.06e-06 4.05e-06 1.73e-06 1.5e-06