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Genes within 1Mb (chr1:45061890:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000070759 TESK2 -429273 sc-eQTL 4.48e-01 0.153 0.202 0.05 CD4_CTL L2
ENSG00000070785 EIF2B3 75168 sc-eQTL 8.98e-01 0.0285 0.222 0.05 CD4_CTL L2
ENSG00000086015 MAST2 -725097 sc-eQTL 5.69e-01 -0.112 0.197 0.05 CD4_CTL L2
ENSG00000117419 ERI3 706630 sc-eQTL 8.10e-01 -0.0537 0.223 0.05 CD4_CTL L2
ENSG00000117448 AKR1A1 -488653 sc-eQTL 2.22e-01 -0.279 0.228 0.05 CD4_CTL L2
ENSG00000117450 PRDX1 -461157 sc-eQTL 6.94e-01 -0.0659 0.167 0.05 CD4_CTL L2
ENSG00000126088 UROD 50940 sc-eQTL 4.00e-01 -0.186 0.221 0.05 CD4_CTL L2
ENSG00000126107 HECTD3 50566 sc-eQTL 2.67e-01 -0.237 0.213 0.05 CD4_CTL L2
ENSG00000132773 TOE1 -278162 sc-eQTL 3.49e-01 -0.199 0.212 0.05 CD4_CTL L2
ENSG00000132780 NASP -521956 sc-eQTL 5.46e-01 -0.121 0.2 0.05 CD4_CTL L2
ENSG00000132781 MUTYH -279003 sc-eQTL 6.75e-01 0.0914 0.217 0.05 CD4_CTL L2
ENSG00000142937 RPS8 286639 sc-eQTL 8.64e-03 -0.237 0.0892 0.05 CD4_CTL L2
ENSG00000159592 GPBP1L1 -626223 sc-eQTL 1.68e-01 0.291 0.21 0.05 CD4_CTL L2
ENSG00000159596 TMEM69 -626291 sc-eQTL 2.26e-01 -0.252 0.208 0.05 CD4_CTL L2
ENSG00000162415 ZSWIM5 -244319 sc-eQTL 9.20e-01 -0.0193 0.192 0.05 CD4_CTL L2
ENSG00000173846 PLK3 261513 sc-eQTL 9.38e-01 0.0124 0.16 0.05 CD4_CTL L2
ENSG00000178028 DMAP1 848435 sc-eQTL 4.50e-01 -0.172 0.227 0.05 CD4_CTL L2
ENSG00000187147 RNF220 656696 sc-eQTL 9.84e-01 0.00353 0.18 0.05 CD4_CTL L2
ENSG00000197429 IPP -688763 sc-eQTL 4.37e-01 -0.173 0.222 0.05 CD4_CTL L2
ENSG00000198520 ARMH1 387198 sc-eQTL 3.92e-01 0.141 0.164 0.05 CD4_CTL L2
ENSG00000070759 TESK2 -429273 sc-eQTL 7.22e-01 0.0773 0.217 0.051 CD8_TCM L2
ENSG00000070785 EIF2B3 75168 sc-eQTL 9.78e-01 0.00625 0.223 0.051 CD8_TCM L2
ENSG00000086015 MAST2 -725097 sc-eQTL 4.94e-01 0.142 0.208 0.051 CD8_TCM L2
ENSG00000117419 ERI3 706630 sc-eQTL 5.51e-02 0.433 0.225 0.051 CD8_TCM L2
ENSG00000117448 AKR1A1 -488653 sc-eQTL 5.98e-01 0.111 0.21 0.051 CD8_TCM L2
ENSG00000117450 PRDX1 -461157 sc-eQTL 1.69e-01 -0.217 0.157 0.051 CD8_TCM L2
ENSG00000126088 UROD 50940 sc-eQTL 7.35e-01 -0.0731 0.216 0.051 CD8_TCM L2
ENSG00000126107 HECTD3 50566 sc-eQTL 3.88e-01 -0.197 0.227 0.051 CD8_TCM L2
ENSG00000132773 TOE1 -278162 sc-eQTL 2.19e-01 -0.249 0.202 0.051 CD8_TCM L2
ENSG00000132780 NASP -521956 sc-eQTL 7.65e-01 -0.0524 0.175 0.051 CD8_TCM L2
ENSG00000132781 MUTYH -279003 sc-eQTL 8.66e-01 -0.0391 0.232 0.051 CD8_TCM L2
ENSG00000142937 RPS8 286639 sc-eQTL 6.48e-01 -0.0523 0.114 0.051 CD8_TCM L2
ENSG00000159592 GPBP1L1 -626223 sc-eQTL 6.58e-02 -0.383 0.207 0.051 CD8_TCM L2
ENSG00000159596 TMEM69 -626291 sc-eQTL 3.80e-02 -0.457 0.219 0.051 CD8_TCM L2
ENSG00000162415 ZSWIM5 -244319 sc-eQTL 6.07e-01 -0.103 0.2 0.051 CD8_TCM L2
ENSG00000173846 PLK3 261513 sc-eQTL 8.16e-02 -0.263 0.15 0.051 CD8_TCM L2
ENSG00000178028 DMAP1 848435 sc-eQTL 4.52e-01 0.171 0.227 0.051 CD8_TCM L2
ENSG00000187147 RNF220 656696 sc-eQTL 7.45e-01 0.0618 0.19 0.051 CD8_TCM L2
ENSG00000197429 IPP -688763 sc-eQTL 7.33e-03 -0.577 0.213 0.051 CD8_TCM L2
ENSG00000198520 ARMH1 387198 sc-eQTL 9.91e-01 -0.00195 0.182 0.051 CD8_TCM L2
ENSG00000070759 TESK2 -429273 sc-eQTL 4.00e-01 0.176 0.209 0.051 NK_CD56bright L2
ENSG00000070785 EIF2B3 75168 sc-eQTL 5.31e-01 0.14 0.223 0.051 NK_CD56bright L2
ENSG00000086015 MAST2 -725097 sc-eQTL 8.05e-01 0.0521 0.21 0.051 NK_CD56bright L2
ENSG00000117419 ERI3 706630 sc-eQTL 1.34e-02 0.553 0.222 0.051 NK_CD56bright L2
ENSG00000117448 AKR1A1 -488653 sc-eQTL 9.86e-02 0.337 0.203 0.051 NK_CD56bright L2
ENSG00000117450 PRDX1 -461157 sc-eQTL 4.52e-01 0.146 0.194 0.051 NK_CD56bright L2
ENSG00000126088 UROD 50940 sc-eQTL 8.44e-01 0.0379 0.192 0.051 NK_CD56bright L2
ENSG00000126106 TMEM53 387409 sc-eQTL 5.64e-01 0.124 0.214 0.051 NK_CD56bright L2
ENSG00000126107 HECTD3 50566 sc-eQTL 5.42e-01 0.133 0.218 0.051 NK_CD56bright L2
ENSG00000132773 TOE1 -278162 sc-eQTL 3.63e-01 0.183 0.201 0.051 NK_CD56bright L2
ENSG00000132780 NASP -521956 sc-eQTL 3.12e-01 -0.194 0.191 0.051 NK_CD56bright L2
ENSG00000132781 MUTYH -279003 sc-eQTL 4.07e-01 0.196 0.236 0.051 NK_CD56bright L2
ENSG00000142937 RPS8 286639 sc-eQTL 8.97e-01 -0.0135 0.104 0.051 NK_CD56bright L2
ENSG00000159592 GPBP1L1 -626223 sc-eQTL 7.11e-01 0.0816 0.22 0.051 NK_CD56bright L2
ENSG00000159596 TMEM69 -626291 sc-eQTL 2.31e-01 -0.249 0.207 0.051 NK_CD56bright L2
ENSG00000162415 ZSWIM5 -244319 sc-eQTL 6.28e-01 -0.0926 0.191 0.051 NK_CD56bright L2
ENSG00000173846 PLK3 261513 sc-eQTL 7.13e-01 -0.0723 0.196 0.051 NK_CD56bright L2
ENSG00000178028 DMAP1 848435 sc-eQTL 4.99e-01 -0.158 0.233 0.051 NK_CD56bright L2
ENSG00000187147 RNF220 656696 sc-eQTL 8.26e-01 -0.0425 0.194 0.051 NK_CD56bright L2
ENSG00000197429 IPP -688763 sc-eQTL 1.76e-01 -0.3 0.221 0.051 NK_CD56bright L2
ENSG00000070759 TESK2 -429273 sc-eQTL 3.30e-01 0.198 0.202 0.07 PB L2
ENSG00000070785 EIF2B3 75168 sc-eQTL 4.87e-01 -0.12 0.173 0.07 PB L2
ENSG00000086015 MAST2 -725097 sc-eQTL 7.23e-01 -0.0769 0.217 0.07 PB L2
ENSG00000117419 ERI3 706630 sc-eQTL 5.89e-01 0.114 0.21 0.07 PB L2
ENSG00000117425 PTCH2 218637 sc-eQTL 1.67e-01 -0.274 0.197 0.07 PB L2
ENSG00000117448 AKR1A1 -488653 sc-eQTL 7.20e-01 0.0403 0.112 0.07 PB L2
ENSG00000117450 PRDX1 -461157 sc-eQTL 9.82e-01 0.00229 0.101 0.07 PB L2
ENSG00000126088 UROD 50940 sc-eQTL 1.68e-01 -0.208 0.15 0.07 PB L2
ENSG00000126106 TMEM53 387409 sc-eQTL 6.58e-01 -0.0897 0.202 0.07 PB L2
ENSG00000126107 HECTD3 50566 sc-eQTL 2.09e-01 0.21 0.166 0.07 PB L2
ENSG00000132773 TOE1 -278162 sc-eQTL 7.66e-01 -0.0642 0.215 0.07 PB L2
ENSG00000132780 NASP -521956 sc-eQTL 6.95e-01 -0.0885 0.225 0.07 PB L2
ENSG00000132781 MUTYH -279003 sc-eQTL 8.56e-01 0.0429 0.235 0.07 PB L2
ENSG00000142937 RPS8 286639 sc-eQTL 6.48e-01 -0.0515 0.113 0.07 PB L2
ENSG00000159592 GPBP1L1 -626223 sc-eQTL 1.52e-01 0.333 0.231 0.07 PB L2
ENSG00000159596 TMEM69 -626291 sc-eQTL 9.67e-01 0.00814 0.194 0.07 PB L2
ENSG00000173846 PLK3 261513 sc-eQTL 6.64e-01 -0.0904 0.207 0.07 PB L2
ENSG00000178028 DMAP1 848435 sc-eQTL 7.75e-01 0.0686 0.24 0.07 PB L2
ENSG00000187147 RNF220 656696 sc-eQTL 4.45e-01 0.153 0.199 0.07 PB L2
ENSG00000197429 IPP -688763 sc-eQTL 4.40e-01 0.17 0.22 0.07 PB L2
ENSG00000198520 ARMH1 387198 sc-eQTL 4.14e-01 0.148 0.181 0.07 PB L2
ENSG00000280670 CCDC163 -438189 sc-eQTL 7.70e-01 -0.0509 0.174 0.07 PB L2
ENSG00000070759 TESK2 -429273 sc-eQTL 5.24e-01 0.135 0.211 0.05 Pro_T L2
ENSG00000070785 EIF2B3 75168 sc-eQTL 3.46e-02 -0.396 0.186 0.05 Pro_T L2
ENSG00000086015 MAST2 -725097 sc-eQTL 8.76e-01 -0.0314 0.201 0.05 Pro_T L2
ENSG00000117419 ERI3 706630 sc-eQTL 3.06e-01 -0.207 0.201 0.05 Pro_T L2
ENSG00000117448 AKR1A1 -488653 sc-eQTL 8.79e-01 0.0216 0.142 0.05 Pro_T L2
ENSG00000117450 PRDX1 -461157 sc-eQTL 6.47e-01 -0.0564 0.123 0.05 Pro_T L2
ENSG00000126088 UROD 50940 sc-eQTL 6.54e-01 -0.0788 0.176 0.05 Pro_T L2
ENSG00000126106 TMEM53 387409 sc-eQTL 9.83e-02 0.329 0.198 0.05 Pro_T L2
ENSG00000126107 HECTD3 50566 sc-eQTL 3.85e-01 -0.176 0.203 0.05 Pro_T L2
ENSG00000132773 TOE1 -278162 sc-eQTL 4.11e-01 0.175 0.212 0.05 Pro_T L2
ENSG00000132780 NASP -521956 sc-eQTL 7.29e-01 0.0374 0.108 0.05 Pro_T L2
ENSG00000132781 MUTYH -279003 sc-eQTL 6.03e-01 -0.112 0.215 0.05 Pro_T L2
ENSG00000142937 RPS8 286639 sc-eQTL 5.91e-01 -0.0461 0.0856 0.05 Pro_T L2
ENSG00000142945 KIF2C 322072 sc-eQTL 3.71e-01 -0.12 0.134 0.05 Pro_T L2
ENSG00000159592 GPBP1L1 -626223 sc-eQTL 2.63e-01 -0.238 0.212 0.05 Pro_T L2
ENSG00000159596 TMEM69 -626291 sc-eQTL 8.45e-01 -0.0377 0.192 0.05 Pro_T L2
ENSG00000162415 ZSWIM5 -244319 sc-eQTL 9.94e-01 0.00121 0.169 0.05 Pro_T L2
ENSG00000173846 PLK3 261513 sc-eQTL 8.17e-01 -0.0421 0.182 0.05 Pro_T L2
ENSG00000178028 DMAP1 848435 sc-eQTL 1.23e-01 -0.34 0.22 0.05 Pro_T L2
ENSG00000186603 HPDL -265005 sc-eQTL 1.51e-01 0.178 0.123 0.05 Pro_T L2
ENSG00000187147 RNF220 656696 sc-eQTL 9.70e-01 0.00627 0.165 0.05 Pro_T L2
ENSG00000197429 IPP -688763 sc-eQTL 7.26e-01 0.0776 0.221 0.05 Pro_T L2
ENSG00000198520 ARMH1 387198 sc-eQTL 6.61e-01 0.0617 0.14 0.05 Pro_T L2
ENSG00000280670 CCDC163 -438189 sc-eQTL 3.10e-01 0.169 0.166 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117425 PTCH2 218637 eQTL 0.02 0.125 0.0536 0.00134 0.0 0.05
ENSG00000126088 UROD 50940 pQTL 0.012 0.0836 0.0332 0.0 0.0 0.0513
ENSG00000126088 UROD 50940 eQTL 3.35e-05 0.195 0.0468 0.0 0.0 0.05
ENSG00000126107 HECTD3 50566 eQTL 0.0203 0.088 0.0379 0.0 0.0 0.05
ENSG00000159588 CCDC17 -562167 eQTL 0.384 0.028 0.0322 0.00126 0.0 0.05
ENSG00000188396 TCTEX1D4 255215 eQTL 0.0076 -0.0808 0.0302 0.0 0.0 0.05
ENSG00000198520 ARMH1 387177 eQTL 0.000124 0.154 0.04 0.00841 0.00503 0.05
ENSG00000222009 BTBD19 253408 eQTL 1.15e-05 -0.146 0.0331 0.0 0.0 0.05
ENSG00000281912 LINC01144 -242020 eQTL 0.0319 0.164 0.0762 0.0 0.0 0.05

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 \N -429273 1.07e-06 6.46e-07 1.76e-07 3.96e-07 9.6e-08 2.64e-07 6.08e-07 2e-07 6.18e-07 3.04e-07 9.07e-07 5.08e-07 9.77e-07 1.6e-07 3.08e-07 3.4e-07 5.55e-07 4.39e-07 2.79e-07 1.91e-07 2.49e-07 5.11e-07 4.08e-07 2.49e-07 9.26e-07 2.64e-07 4.27e-07 3.24e-07 5.03e-07 7.09e-07 3.66e-07 3.51e-08 4.92e-08 1.71e-07 3.38e-07 2.04e-07 1.12e-07 1.06e-07 7.63e-08 2.74e-08 1.02e-07 6.11e-07 5.03e-08 1.94e-08 1.96e-07 2.07e-08 1.18e-07 4.41e-08 5.4e-08
ENSG00000126088 UROD 50940 1.04e-05 1.18e-05 2.49e-06 6.46e-06 2.4e-06 5.2e-06 1.37e-05 2.25e-06 1.06e-05 5.94e-06 1.44e-05 6.27e-06 1.86e-05 3.9e-06 3.66e-06 7.21e-06 5.99e-06 9.78e-06 3.42e-06 3.29e-06 6.71e-06 1.09e-05 1.1e-05 4.06e-06 1.8e-05 4.47e-06 6.74e-06 5.21e-06 1.38e-05 1.1e-05 7.11e-06 1.06e-06 1.48e-06 3.8e-06 4.96e-06 2.85e-06 1.77e-06 2.09e-06 2.22e-06 1.3e-06 1.21e-06 1.39e-05 1.64e-06 2.73e-07 1.55e-06 1.96e-06 1.94e-06 8.61e-07 6.66e-07
ENSG00000188396 TCTEX1D4 255215 1.35e-06 1.33e-06 2.74e-07 1.25e-06 4.72e-07 6.36e-07 1.43e-06 4.33e-07 1.75e-06 6.82e-07 2.05e-06 1.12e-06 2.64e-06 3.26e-07 4.14e-07 9.68e-07 1.16e-06 1.1e-06 5.81e-07 5.11e-07 6.58e-07 2e-06 1.33e-06 6.43e-07 2.41e-06 8.82e-07 1.01e-06 8.57e-07 1.69e-06 1.3e-06 8.3e-07 2.82e-07 3.44e-07 5.72e-07 5.69e-07 6.26e-07 7.58e-07 3.43e-07 5.05e-07 3.35e-07 2.59e-07 1.8e-06 2.92e-07 9e-08 3.89e-07 2.29e-07 2.6e-07 2.1e-07 2.91e-07
ENSG00000198520 ARMH1 387177 1.25e-06 8.23e-07 2.89e-07 4.43e-07 1.81e-07 3.26e-07 7.25e-07 2.71e-07 8.29e-07 2.69e-07 1.09e-06 5.69e-07 1.23e-06 1.97e-07 4.03e-07 4.84e-07 7.39e-07 5.31e-07 3.74e-07 3.72e-07 2.72e-07 6.48e-07 5.66e-07 3.56e-07 1.38e-06 2.47e-07 5.24e-07 4.4e-07 6.85e-07 8.43e-07 4.48e-07 4.94e-08 1.21e-07 2.33e-07 3.6e-07 3.21e-07 1.93e-07 1.32e-07 1.01e-07 8.36e-09 1.38e-07 8.03e-07 6.68e-08 5.54e-09 1.73e-07 4.48e-08 1.71e-07 8.74e-08 8e-08
ENSG00000222009 BTBD19 253408 1.4e-06 1.3e-06 2.91e-07 1.28e-06 4.9e-07 6.3e-07 1.41e-06 3.98e-07 1.69e-06 7.15e-07 2.07e-06 1.15e-06 2.66e-06 3.29e-07 4.05e-07 1.03e-06 1.14e-06 1.09e-06 5.86e-07 5.62e-07 6.61e-07 1.98e-06 1.34e-06 6.79e-07 2.44e-06 9.13e-07 1.02e-06 8.53e-07 1.69e-06 1.31e-06 8.51e-07 2.83e-07 3.47e-07 5.61e-07 5.17e-07 6.02e-07 7.32e-07 3.59e-07 4.8e-07 2.93e-07 3.03e-07 1.88e-06 3.34e-07 1.06e-07 3.79e-07 2.32e-07 2.87e-07 2.11e-07 2.8e-07
ENSG00000281912 LINC01144 -242020 1.59e-06 1.55e-06 2.88e-07 1.26e-06 4.77e-07 6.58e-07 1.27e-06 4.05e-07 1.71e-06 7.2e-07 2.02e-06 1.29e-06 2.62e-06 3.95e-07 3.41e-07 1.06e-06 1.11e-06 1.2e-06 5.57e-07 6.51e-07 6.39e-07 1.92e-06 1.58e-06 8.09e-07 2.34e-06 1.02e-06 1e-06 9.82e-07 1.72e-06 1.36e-06 7.58e-07 2.6e-07 3.97e-07 6.34e-07 5.82e-07 6.72e-07 7.12e-07 3.34e-07 5e-07 2.44e-07 3.54e-07 2.01e-06 3.49e-07 1.38e-07 3.68e-07 3.08e-07 3.64e-07 2.44e-07 2.44e-07