Genes within 1Mb (chr1:45000160:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 -491003 eQTL 4.77e-02 0.0303 0.0153 0.0 0.0 0.41
ENSG00000117450 PRDX1 -522887 eQTL 2.06e-03 0.0364 0.0118 0.0 0.0 0.41
ENSG00000126088 UROD -10790 pQTL 1.63e-67 0.245 0.0133 0.0 0.0 0.411
ENSG00000126088 UROD -10790 eQTL 1.41e-25 0.217 0.0201 0.0 0.0 0.41
ENSG00000126106 TMEM53 325679 eQTL 1.71e-01 0.0362 0.0264 0.00317 0.00115 0.41
ENSG00000142945 KIF2C 260342 eQTL 5.20e-11 0.111 0.0168 0.0 0.0 0.41
ENSG00000142959 BEST4 211990 eQTL 3.28e-04 -0.102 0.0284 0.0027 0.00228 0.41
ENSG00000159596 TMEM69 -688021 eQTL 3.31e-03 -0.066 0.0224 0.0 0.0 0.41
ENSG00000173846 PLK3 199783 eQTL 2.16e-04 0.0431 0.0116 0.0 0.0 0.41
ENSG00000186603 HPDL -326745 eQTL 4.97e-02 -0.0547 0.0278 0.00103 0.0 0.41
ENSG00000188396 TCTEX1D4 193485 eQTL 1.93e-01 -0.0178 0.0137 0.0 0.00123 0.41
ENSG00000198520 ARMH1 325447 eQTL 2.05e-04 0.0673 0.0181 0.0 0.0 0.41
ENSG00000225447 RPS15AP10 -646037 eQTL 4.90e-02 0.0674 0.0342 0.0 0.0 0.41
ENSG00000234329 AL604028.2 -651666 eQTL 1.85e-02 0.0599 0.0254 0.0 0.0 0.41


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117450 PRDX1 -522887 2.74e-07 1.33e-07 3.69e-08 2.05e-07 8.83e-08 9.48e-08 1.42e-07 5.4e-08 1.44e-07 4.57e-08 1.57e-07 8.55e-08 1.45e-07 6.76e-08 5.43e-08 7.3e-08 3.87e-08 1.18e-07 5.36e-08 4.3e-08 1.04e-07 1.24e-07 1.32e-07 3.49e-08 1.4e-07 1.14e-07 1.07e-07 9.74e-08 1.03e-07 1.1e-07 9.64e-08 3.7e-08 3.61e-08 8e-08 3.52e-08 3.62e-08 6.2e-08 9.49e-08 6.56e-08 3.82e-08 3.82e-08 1.46e-07 4.33e-08 2.09e-08 7.79e-08 1.84e-08 1.23e-07 3.99e-09 4.79e-08
ENSG00000126088 UROD -10790 5.09e-05 3.7e-05 7.19e-06 1.75e-05 7.46e-06 1.77e-05 5.26e-05 6.27e-06 3.78e-05 1.93e-05 4.55e-05 2.11e-05 5.71e-05 1.72e-05 8.34e-06 2.5e-05 2.14e-05 3.25e-05 9.91e-06 7.97e-06 2.13e-05 4.48e-05 3.64e-05 1.07e-05 5.6e-05 1.09e-05 1.89e-05 1.64e-05 3.86e-05 2.77e-05 2.53e-05 1.96e-06 3.67e-06 8.2e-06 1.39e-05 7.67e-06 3.7e-06 3.75e-06 5.9e-06 3.81e-06 1.87e-06 4.61e-05 4.49e-06 4.21e-07 2.93e-06 4.96e-06 4.86e-06 2.14e-06 1.51e-06
ENSG00000126106 TMEM53 325679 7.3e-07 7.98e-07 1.05e-07 4.39e-07 1.11e-07 2.64e-07 4.05e-07 9.91e-08 3.66e-07 1.65e-07 5.29e-07 3.36e-07 6.27e-07 1.17e-07 4.15e-07 1.96e-07 3.13e-07 3.04e-07 9.97e-08 2.02e-07 1.8e-07 3.95e-07 2.67e-07 1.23e-07 6.18e-07 2e-07 2.71e-07 2.98e-07 1.54e-07 3.3e-07 2.19e-07 7.69e-08 4.28e-08 1.39e-07 3.82e-07 6.83e-08 4.73e-07 5.71e-08 4.04e-08 8.29e-09 3.6e-08 5.79e-07 2.92e-08 3.4e-08 3.3e-08 1.61e-08 8.94e-08 2.89e-09 4.61e-08
ENSG00000142945 KIF2C 260342 1.26e-06 9.39e-07 2.84e-07 7.96e-07 9.61e-08 4.69e-07 7.02e-07 2.64e-07 1.11e-06 3.05e-07 1.19e-06 5.68e-07 1.48e-06 2.54e-07 5.34e-07 5.49e-07 7.74e-07 5.16e-07 2.87e-07 6.79e-07 2.89e-07 1.12e-06 5.63e-07 4.44e-07 1.66e-06 2.64e-07 6.75e-07 7.26e-07 4.39e-07 8.63e-07 4.48e-07 5.06e-08 1.81e-07 3.28e-07 5.32e-07 2.89e-07 7.12e-07 1.21e-07 1.54e-07 2.93e-07 1.3e-07 1.4e-06 6.65e-08 1.32e-07 1.15e-07 7.36e-08 1.19e-07 8.41e-08 6.14e-08
ENSG00000142959 BEST4 211990 1.29e-06 2.2e-06 2.29e-07 1.32e-06 3.09e-07 6.4e-07 1.59e-06 3.69e-07 1.66e-06 5.98e-07 1.85e-06 8.48e-07 2.38e-06 3.31e-07 5.05e-07 9.92e-07 1e-06 6.85e-07 7.02e-07 6.87e-07 8.07e-07 1.98e-06 9.18e-07 5.65e-07 2.31e-06 3.91e-07 1.03e-06 1.05e-06 1.04e-06 1.27e-06 7.58e-07 2.62e-07 2.82e-07 6.58e-07 8.31e-07 4.54e-07 8.21e-07 2.29e-07 4.52e-07 2.58e-07 2.92e-07 1.73e-06 4.07e-07 1.81e-07 1.69e-07 2.14e-07 2.3e-07 1.27e-07 1.16e-07
ENSG00000173846 PLK3 199783 1.29e-06 2.61e-06 2.53e-07 1.48e-06 3.43e-07 7.17e-07 1.5e-06 4.04e-07 1.7e-06 6.28e-07 2.05e-06 1.12e-06 2.56e-06 4.89e-07 8.32e-07 9.9e-07 1.14e-06 9.58e-07 8.2e-07 1.04e-06 7.41e-07 1.99e-06 1.14e-06 6.31e-07 2.36e-06 5.53e-07 1.06e-06 1.26e-06 1.28e-06 1.16e-06 8.13e-07 2.49e-07 3.58e-07 6.06e-07 9.04e-07 4.82e-07 9.09e-07 2.78e-07 4.8e-07 3.76e-07 2.8e-07 2.12e-06 4.13e-07 1.87e-07 1.81e-07 2.73e-07 2.09e-07 2.24e-07 1.71e-07