Genes within 1Mb (chr1:44730955:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117408 IPO13 784005 eQTL 4.16e-02 0.0318 0.0156 0.0 0.0 0.497
ENSG00000117425 PTCH2 -112298 eQTL 6.27e-02 0.044 0.0236 0.00108 0.0 0.497
ENSG00000126088 UROD -279995 pQTL 3.51e-34 -0.176 0.014 0.0 0.0 0.499
ENSG00000126088 UROD -279995 eQTL 2.23e-11 -0.137 0.0203 0.0 0.0 0.497
ENSG00000126106 TMEM53 56474 eQTL 5.58e-01 -0.0151 0.0258 0.00116 0.0 0.497
ENSG00000132763 MMACHC -769345 eQTL 8.96e-03 0.0797 0.0304 0.0 0.0 0.497
ENSG00000142937 RPS8 -44296 eQTL 3.56e-02 0.0109 0.00516 0.00108 0.0 0.497
ENSG00000142945 KIF2C -8863 eQTL 5.33e-13 -0.119 0.0163 0.0 0.0 0.497
ENSG00000142959 BEST4 -57215 eQTL 3.58e-04 0.0992 0.0277 0.00241 0.00193 0.497
ENSG00000173846 PLK3 -69422 eQTL 2.03e-04 -0.0422 0.0113 0.0 0.0 0.497
ENSG00000188396 TCTEX1D4 -75720 eQTL 4.45e-02 -0.0268 0.0133 0.0 0.0 0.497
ENSG00000198520 ARMH1 56242 eQTL 2.39e-02 -0.04 0.0177 0.0 0.0 0.497
ENSG00000222009 BTBD19 -77527 eQTL 1.55e-09 -0.088 0.0144 0.00319 0.0 0.497
ENSG00000230896 AL604028.1 -966120 eQTL 4.86e-02 -0.0745 0.0377 0.0 0.0 0.497
ENSG00000280670 CCDC163 -769124 eQTL 3.98e-07 0.187 0.0366 0.0 0.0 0.497


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000126088 UROD -279995 3.54e-06 4.05e-06 1.36e-06 3.48e-06 1.35e-06 1.56e-06 5.01e-06 7.94e-07 4.97e-06 2.44e-06 5.21e-06 3.6e-06 7.02e-06 1.97e-06 9.49e-07 2.66e-06 3.02e-06 3.83e-06 1.55e-06 9.89e-07 2.9e-06 4.42e-06 4.24e-06 1.99e-06 6.11e-06 1.36e-06 2.62e-06 1.79e-06 4.38e-06 4.28e-06 2.85e-06 5.93e-07 6.65e-07 1.73e-06 1.97e-06 9.08e-07 1e-06 4.36e-07 1.18e-06 3.98e-07 2.44e-07 4.71e-06 4.73e-07 2.22e-07 7.66e-07 9.48e-07 7.76e-07 6.21e-07 5.85e-07
ENSG00000142945 KIF2C -8863 0.000172 0.000154 3.37e-05 6.84e-05 3.36e-05 6.89e-05 0.000162 2.92e-05 0.000144 8.63e-05 0.000186 8.4e-05 0.000194 5.97e-05 3.66e-05 0.00013 7.98e-05 0.000108 4e-05 3.68e-05 8.45e-05 0.000177 0.000146 5.57e-05 0.000217 5.34e-05 8.16e-05 6.58e-05 0.000133 9.13e-05 0.000109 1.45e-05 2.1e-05 3.66e-05 4.64e-05 2.9e-05 1.93e-05 1.71e-05 2.57e-05 1.58e-05 1.51e-05 0.000145 1.83e-05 2.33e-06 1.37e-05 2.21e-05 2.24e-05 1.31e-05 8.38e-06
ENSG00000142959 BEST4 -57215 3.12e-05 3.22e-05 7.54e-06 1.56e-05 5.8e-06 1.57e-05 4.47e-05 4.59e-06 3.11e-05 1.55e-05 3.97e-05 1.95e-05 5.31e-05 1.05e-05 7.03e-06 1.88e-05 1.83e-05 2.39e-05 7.47e-06 6.6e-06 1.46e-05 3.46e-05 3.2e-05 1.07e-05 4.24e-05 9.53e-06 1.23e-05 1.09e-05 3.39e-05 2.61e-05 2.2e-05 1.65e-06 2.68e-06 6.68e-06 1.15e-05 5.84e-06 3.09e-06 3.16e-06 4.16e-06 3.71e-06 1.83e-06 3.78e-05 3.38e-06 4.39e-07 2.32e-06 3.84e-06 4.57e-06 1.66e-06 1.63e-06
ENSG00000173846 PLK3 -69422 2.31e-05 2.91e-05 6.95e-06 1.45e-05 4.91e-06 1.37e-05 4.07e-05 3.9e-06 2.67e-05 1.34e-05 3.39e-05 1.65e-05 4.54e-05 8.91e-06 6.39e-06 1.56e-05 1.56e-05 2.14e-05 6.85e-06 5.63e-06 1.3e-05 2.86e-05 2.82e-05 1e-05 3.7e-05 8.26e-06 1.01e-05 8.99e-06 2.98e-05 2.4e-05 1.83e-05 1.64e-06 2.37e-06 5.43e-06 1.04e-05 4.91e-06 2.62e-06 3.05e-06 3.61e-06 3.36e-06 1.78e-06 3.25e-05 2.81e-06 4.37e-07 2.13e-06 3.36e-06 4.14e-06 1.56e-06 1.52e-06
ENSG00000222009 BTBD19 -77527 1.83e-05 2.74e-05 6.48e-06 1.35e-05 4.43e-06 1.29e-05 3.81e-05 3.73e-06 2.44e-05 1.23e-05 3.11e-05 1.5e-05 4.07e-05 7.67e-06 6.21e-06 1.42e-05 1.47e-05 2.01e-05 6.56e-06 5.3e-06 1.18e-05 2.57e-05 2.59e-05 9.54e-06 3.43e-05 7.59e-06 9.09e-06 8.22e-06 2.76e-05 2.23e-05 1.66e-05 1.64e-06 2.29e-06 4.84e-06 9.85e-06 4.56e-06 2.24e-06 2.96e-06 3.31e-06 3.17e-06 1.76e-06 2.9e-05 2.67e-06 4.38e-07 2.04e-06 3.29e-06 4.09e-06 1.49e-06 1.46e-06
ENSG00000280670 CCDC163 -769124 4.37e-07 1.76e-07 1.14e-07 3.77e-07 1.07e-07 1.54e-07 5.01e-07 5.66e-08 3.03e-07 1.78e-07 4.64e-07 2.11e-07 5.09e-07 1.58e-07 7.98e-08 9.11e-08 6.37e-07 3.44e-07 9.19e-08 8e-08 1.59e-07 2.06e-07 2.2e-07 7.36e-08 5.53e-07 1.31e-07 2.24e-07 1.28e-07 1.48e-07 5.28e-07 2.11e-07 3.6e-08 3.46e-08 1.23e-07 3.69e-07 5.04e-08 5.65e-08 5.8e-08 6.71e-08 4.55e-08 3.82e-08 1.59e-07 2.89e-08 2.03e-08 2.03e-07 1.44e-08 7.8e-08 3.04e-09 4.83e-08