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Genes within 1Mb (chr1:44648787:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 998638 sc-eQTL 3.93e-01 0.225 0.263 0.052 gdT L2
ENSG00000070759 TESK2 -842376 sc-eQTL 3.61e-01 -0.218 0.238 0.052 gdT L2
ENSG00000070785 EIF2B3 -337935 sc-eQTL 9.34e-01 -0.0207 0.249 0.052 gdT L2
ENSG00000117408 IPO13 701837 sc-eQTL 1.77e-01 -0.331 0.244 0.052 gdT L2
ENSG00000117410 ATP6V0B 674300 sc-eQTL 1.04e-01 0.361 0.221 0.052 gdT L2
ENSG00000117411 B4GALT2 669844 sc-eQTL 1.31e-01 -0.346 0.228 0.052 gdT L2
ENSG00000117419 ERI3 293527 sc-eQTL 5.84e-01 0.148 0.27 0.052 gdT L2
ENSG00000117448 AKR1A1 -901756 sc-eQTL 7.19e-01 -0.0858 0.239 0.052 gdT L2
ENSG00000117450 PRDX1 -874260 sc-eQTL 9.78e-01 0.00627 0.223 0.052 gdT L2
ENSG00000126088 UROD -362163 sc-eQTL 4.77e-01 -0.162 0.228 0.052 gdT L2
ENSG00000126091 ST3GAL3 942963 sc-eQTL 3.34e-01 -0.239 0.247 0.052 gdT L2
ENSG00000126106 TMEM53 -25694 sc-eQTL 3.77e-01 -0.205 0.231 0.052 gdT L2
ENSG00000126107 HECTD3 -362537 sc-eQTL 2.08e-01 -0.332 0.263 0.052 gdT L2
ENSG00000132768 DPH2 678787 sc-eQTL 9.77e-01 0.00703 0.244 0.052 gdT L2
ENSG00000132773 TOE1 -691265 sc-eQTL 1.28e-01 -0.354 0.231 0.052 gdT L2
ENSG00000132780 NASP -935059 sc-eQTL 6.96e-01 0.0925 0.237 0.052 gdT L2
ENSG00000132781 MUTYH -692106 sc-eQTL 3.16e-02 0.529 0.244 0.052 gdT L2
ENSG00000142937 RPS8 -126464 sc-eQTL 4.68e-01 0.071 0.0976 0.052 gdT L2
ENSG00000142945 KIF2C -91031 sc-eQTL 2.40e-01 -0.17 0.144 0.052 gdT L2
ENSG00000162415 ZSWIM5 -657422 sc-eQTL 3.04e-01 -0.234 0.227 0.052 gdT L2
ENSG00000173846 PLK3 -151590 sc-eQTL 1.27e-01 -0.252 0.164 0.052 gdT L2
ENSG00000178028 DMAP1 435332 sc-eQTL 7.73e-01 0.0716 0.247 0.052 gdT L2
ENSG00000186603 HPDL -678108 sc-eQTL 1.01e-01 0.325 0.197 0.052 gdT L2
ENSG00000187147 RNF220 243593 sc-eQTL 7.28e-01 0.0713 0.205 0.052 gdT L2
ENSG00000198520 ARMH1 -25905 sc-eQTL 1.39e-01 0.33 0.222 0.052 gdT L2
ENSG00000280670 CCDC163 -851292 sc-eQTL 9.76e-02 -0.38 0.228 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066135 KDM4A 998638 eQTL 0.0295 0.0646 0.0296 0.0 0.0 0.0682
ENSG00000070759 TESK2 -842376 eQTL 0.027 0.0634 0.0286 0.0 0.0 0.0682
ENSG00000126088 UROD -362163 pQTL 0.0308 0.0617 0.0285 0.0 0.0 0.065
ENSG00000126091 ST3GAL3 942963 eQTL 0.00862 -0.0754 0.0286 0.0 0.0 0.0682
ENSG00000126106 TMEM53 -25694 eQTL 4.2e-22 -0.468 0.0472 0.0059 0.0097 0.0682
ENSG00000159214 CCDC24 657428 eQTL 0.0342 0.144 0.0678 0.0 0.0 0.0682
ENSG00000222009 BTBD19 -159695 eQTL 0.00652 0.0768 0.0282 0.0 0.0 0.0682

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000126106 TMEM53 -25694 1.6e-05 2.06e-05 3.2e-06 1.1e-05 3.33e-06 7.88e-06 2.38e-05 3.76e-06 1.84e-05 9.54e-06 2.33e-05 9.95e-06 3.19e-05 8.66e-06 5.14e-06 1.15e-05 9.72e-06 1.62e-05 4.42e-06 4.69e-06 8.88e-06 1.87e-05 1.84e-05 5.33e-06 2.93e-05 5.37e-06 8.36e-06 8.02e-06 1.77e-05 1.52e-05 1.27e-05 1.4e-06 1.79e-06 4.69e-06 7.74e-06 4.22e-06 2.05e-06 2.7e-06 3.25e-06 2.1e-06 1.44e-06 2.49e-05 2.76e-06 1.76e-07 1.97e-06 2.8e-06 3.27e-06 1.27e-06 9.71e-07
ENSG00000142959 \N -139383 3.53e-06 3.76e-06 3.27e-07 1.93e-06 6.39e-07 8.19e-07 2.46e-06 9.96e-07 2.44e-06 1.41e-06 3.2e-06 2.45e-06 5.39e-06 1.34e-06 8.86e-07 1.99e-06 1.63e-06 2.08e-06 1.05e-06 1.23e-06 1.73e-06 3.43e-06 3.01e-06 1.05e-06 4.29e-06 1.21e-06 1.74e-06 1.68e-06 2.49e-06 1.79e-06 2.04e-06 4.9e-07 6.21e-07 1.28e-06 1.69e-06 9.19e-07 9.07e-07 4.21e-07 1.35e-06 3.98e-07 3.04e-07 4.34e-06 3.65e-07 1.91e-07 2.91e-07 4e-07 8.61e-07 2.07e-07 2.01e-07
ENSG00000222009 BTBD19 -159695 2.75e-06 2.54e-06 2.74e-07 1.71e-06 4.78e-07 8.16e-07 1.65e-06 8.37e-07 1.8e-06 9.12e-07 2.43e-06 1.39e-06 3.23e-06 1.43e-06 5.41e-07 1.77e-06 1.09e-06 2.24e-06 5.3e-07 1.16e-06 1.26e-06 3.02e-06 2.12e-06 1e-06 3.4e-06 1.33e-06 1.38e-06 1.78e-06 1.78e-06 1.59e-06 1.45e-06 3.79e-07 5.52e-07 1.2e-06 1e-06 1.01e-06 8.71e-07 4.21e-07 9.59e-07 3.28e-07 3.56e-07 3.42e-06 4.46e-07 1.41e-07 3.75e-07 3.63e-07 5.64e-07 2.22e-07 3.01e-07