Genes within 1Mb (chr1:44526309:C:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 876160 sc-eQTL 9.87e-01 0.00339 0.212 0.056 PB L2
ENSG00000070759 TESK2 -964854 sc-eQTL 9.97e-01 0.000795 0.214 0.056 PB L2
ENSG00000070785 EIF2B3 -460413 sc-eQTL 8.84e-01 -0.0266 0.182 0.056 PB L2
ENSG00000117408 IPO13 579359 sc-eQTL 4.68e-01 -0.168 0.231 0.056 PB L2
ENSG00000117410 ATP6V0B 551822 sc-eQTL 3.46e-01 -0.0974 0.103 0.056 PB L2
ENSG00000117411 B4GALT2 547366 sc-eQTL 4.09e-01 0.13 0.158 0.056 PB L2
ENSG00000117419 ERI3 171049 sc-eQTL 5.45e-01 -0.134 0.221 0.056 PB L2
ENSG00000117425 PTCH2 -316944 sc-eQTL 6.87e-01 -0.0844 0.209 0.056 PB L2
ENSG00000117450 PRDX1 -996738 sc-eQTL 3.94e-01 -0.091 0.106 0.056 PB L2
ENSG00000126088 UROD -484641 sc-eQTL 3.36e-02 0.337 0.157 0.056 PB L2
ENSG00000126091 ST3GAL3 820485 sc-eQTL 1.62e-01 -0.306 0.217 0.056 PB L2
ENSG00000126106 TMEM53 -148172 sc-eQTL 2.67e-01 -0.237 0.212 0.056 PB L2
ENSG00000126107 HECTD3 -485015 sc-eQTL 6.09e-03 0.477 0.17 0.056 PB L2
ENSG00000132768 DPH2 556309 sc-eQTL 6.97e-02 0.415 0.227 0.056 PB L2
ENSG00000132773 TOE1 -813743 sc-eQTL 6.38e-01 -0.107 0.227 0.056 PB L2
ENSG00000132781 MUTYH -814584 sc-eQTL 6.23e-01 0.122 0.248 0.056 PB L2
ENSG00000142937 RPS8 -248942 sc-eQTL 8.74e-01 -0.0188 0.119 0.056 PB L2
ENSG00000159214 CCDC24 534950 sc-eQTL 4.51e-01 0.17 0.225 0.056 PB L2
ENSG00000173846 PLK3 -274068 sc-eQTL 9.89e-01 -0.00301 0.219 0.056 PB L2
ENSG00000178028 DMAP1 312854 sc-eQTL 3.67e-01 0.229 0.252 0.056 PB L2
ENSG00000187147 RNF220 121115 sc-eQTL 3.43e-01 0.199 0.21 0.056 PB L2
ENSG00000198520 ARMH1 -148383 sc-eQTL 9.21e-02 -0.321 0.189 0.056 PB L2
ENSG00000280670 CCDC163 -973770 sc-eQTL 3.83e-01 -0.16 0.183 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000132763 MMACHC -973991 eQTL 0.0124 0.247 0.0985 0.0 0.0 0.027
ENSG00000159214 CCDC24 534950 eQTL 0.00644 0.311 0.114 0.0 0.0 0.027
ENSG00000173846 PLK3 -274068 eQTL 0.0186 -0.0867 0.0368 0.0 0.0 0.027
ENSG00000222009 BTBD19 -282173 eQTL 0.00175 -0.149 0.0474 0.0 0.0 0.027
ENSG00000280670 CCDC163 -973770 eQTL 0.00569 0.332 0.12 0.0 0.0 0.027


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117411 \N 547366 4.91e-06 9.44e-07 2.01e-07 1.14e-06 1.18e-07 7.87e-07 1.45e-06 3.34e-07 1.41e-06 3.09e-07 1.22e-06 6.45e-07 3.22e-06 2.86e-07 4.34e-07 7e-07 7.93e-07 6.5e-07 3.66e-07 6.83e-07 2.89e-07 1.08e-06 6.93e-07 3.06e-07 2.3e-06 3.28e-07 4.97e-07 4.77e-07 1.25e-06 1.34e-06 7.1e-07 5.02e-08 4.83e-08 6.58e-07 5.6e-07 3.94e-07 7.05e-07 1.69e-07 4.52e-07 3.32e-07 3.59e-07 1.49e-06 4.02e-07 7.51e-09 8.24e-08 3.46e-08 1.21e-07 1.13e-08 4.59e-08
ENSG00000222009 BTBD19 -282173 2.06e-05 2.62e-06 2.31e-07 2.41e-06 4.13e-07 1.62e-06 2.46e-06 4.77e-07 2.53e-06 7.38e-07 2.02e-06 1.71e-06 7.72e-06 1.47e-06 4.61e-07 1.62e-06 1.46e-06 2.15e-06 5.76e-07 1.3e-06 6.36e-07 2.82e-06 2.13e-06 8.71e-07 4.5e-06 1.37e-06 1.12e-06 1.3e-06 2.66e-06 2.65e-06 2.01e-06 3.4e-07 2.82e-07 1.28e-06 1.9e-06 9.57e-07 9.08e-07 4.1e-07 1.3e-06 3.23e-07 6.15e-07 3.92e-06 4.02e-07 1.73e-08 1.52e-07 2.13e-07 2.28e-07 8.25e-08 6.12e-08