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Genes within 1Mb (chr1:44526053:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 875904 sc-eQTL 6.20e-01 -0.119 0.24 0.949 B_Activated L2
ENSG00000070759 TESK2 -965110 sc-eQTL 1.59e-01 0.332 0.235 0.949 B_Activated L2
ENSG00000070785 EIF2B3 -460669 sc-eQTL 1.02e-01 0.375 0.228 0.949 B_Activated L2
ENSG00000117408 IPO13 579103 sc-eQTL 3.07e-01 0.218 0.213 0.949 B_Activated L2
ENSG00000117410 ATP6V0B 551566 sc-eQTL 4.85e-01 -0.148 0.211 0.949 B_Activated L2
ENSG00000117411 B4GALT2 547110 sc-eQTL 7.79e-01 -0.0552 0.197 0.949 B_Activated L2
ENSG00000117419 ERI3 170793 sc-eQTL 6.41e-01 -0.116 0.249 0.949 B_Activated L2
ENSG00000117425 PTCH2 -317200 sc-eQTL 7.56e-01 0.0434 0.139 0.949 B_Activated L2
ENSG00000117450 PRDX1 -996994 sc-eQTL 2.19e-01 -0.223 0.181 0.949 B_Activated L2
ENSG00000126088 UROD -484897 sc-eQTL 3.77e-01 -0.213 0.24 0.949 B_Activated L2
ENSG00000126091 ST3GAL3 820229 sc-eQTL 6.80e-01 0.0929 0.225 0.949 B_Activated L2
ENSG00000126106 TMEM53 -148428 sc-eQTL 7.39e-01 -0.0678 0.203 0.949 B_Activated L2
ENSG00000126107 HECTD3 -485271 sc-eQTL 6.83e-01 0.0957 0.234 0.949 B_Activated L2
ENSG00000132768 DPH2 556053 sc-eQTL 7.64e-02 0.416 0.233 0.949 B_Activated L2
ENSG00000132773 TOE1 -813999 sc-eQTL 2.04e-01 0.291 0.228 0.949 B_Activated L2
ENSG00000132781 MUTYH -814840 sc-eQTL 5.18e-01 -0.155 0.239 0.949 B_Activated L2
ENSG00000142937 RPS8 -249198 sc-eQTL 7.56e-01 -0.0373 0.12 0.949 B_Activated L2
ENSG00000159214 CCDC24 534694 sc-eQTL 1.77e-01 -0.272 0.201 0.949 B_Activated L2
ENSG00000173846 PLK3 -274324 sc-eQTL 4.36e-01 0.17 0.218 0.949 B_Activated L2
ENSG00000178028 DMAP1 312598 sc-eQTL 6.90e-01 0.0984 0.246 0.949 B_Activated L2
ENSG00000187147 RNF220 120859 sc-eQTL 6.03e-01 -0.116 0.223 0.949 B_Activated L2
ENSG00000198520 ARMH1 -148639 sc-eQTL 9.74e-01 -0.00702 0.219 0.949 B_Activated L2
ENSG00000280670 CCDC163 -974026 sc-eQTL 8.66e-01 0.027 0.16 0.949 B_Activated L2
ENSG00000066135 KDM4A 875904 sc-eQTL 2.74e-01 0.254 0.231 0.95 NK_HLA L2
ENSG00000070759 TESK2 -965110 sc-eQTL 3.98e-02 0.448 0.216 0.95 NK_HLA L2
ENSG00000070785 EIF2B3 -460669 sc-eQTL 7.19e-01 0.0809 0.225 0.95 NK_HLA L2
ENSG00000117408 IPO13 579103 sc-eQTL 5.63e-01 -0.122 0.211 0.95 NK_HLA L2
ENSG00000117410 ATP6V0B 551566 sc-eQTL 9.31e-01 0.0188 0.218 0.95 NK_HLA L2
ENSG00000117411 B4GALT2 547110 sc-eQTL 2.00e-01 -0.261 0.202 0.95 NK_HLA L2
ENSG00000117419 ERI3 170793 sc-eQTL 2.42e-01 0.266 0.227 0.95 NK_HLA L2
ENSG00000117450 PRDX1 -996994 sc-eQTL 8.23e-01 -0.0433 0.193 0.95 NK_HLA L2
ENSG00000126088 UROD -484897 sc-eQTL 1.50e-01 0.327 0.226 0.95 NK_HLA L2
ENSG00000126091 ST3GAL3 820229 sc-eQTL 5.47e-01 0.136 0.225 0.95 NK_HLA L2
ENSG00000126106 TMEM53 -148428 sc-eQTL 2.23e-02 -0.49 0.213 0.95 NK_HLA L2
ENSG00000126107 HECTD3 -485271 sc-eQTL 1.44e-01 -0.351 0.239 0.95 NK_HLA L2
ENSG00000132768 DPH2 556053 sc-eQTL 6.86e-01 0.0938 0.232 0.95 NK_HLA L2
ENSG00000132773 TOE1 -813999 sc-eQTL 3.78e-01 0.196 0.222 0.95 NK_HLA L2
ENSG00000132781 MUTYH -814840 sc-eQTL 8.55e-04 0.763 0.225 0.95 NK_HLA L2
ENSG00000142937 RPS8 -249198 sc-eQTL 3.00e-01 0.102 0.098 0.95 NK_HLA L2
ENSG00000159214 CCDC24 534694 sc-eQTL 9.14e-01 -0.0226 0.208 0.95 NK_HLA L2
ENSG00000162415 ZSWIM5 -780156 sc-eQTL 1.68e-01 0.276 0.2 0.95 NK_HLA L2
ENSG00000173846 PLK3 -274324 sc-eQTL 8.09e-01 0.0491 0.203 0.95 NK_HLA L2
ENSG00000178028 DMAP1 312598 sc-eQTL 1.18e-01 -0.357 0.228 0.95 NK_HLA L2
ENSG00000187147 RNF220 120859 sc-eQTL 1.63e-03 -0.611 0.191 0.95 NK_HLA L2
ENSG00000066135 KDM4A 875904 sc-eQTL 5.61e-01 -0.131 0.226 0.949 cDC L2
ENSG00000070759 TESK2 -965110 sc-eQTL 7.33e-01 -0.0762 0.223 0.949 cDC L2
ENSG00000070785 EIF2B3 -460669 sc-eQTL 8.03e-01 -0.0539 0.215 0.949 cDC L2
ENSG00000117408 IPO13 579103 sc-eQTL 7.85e-01 0.0601 0.22 0.949 cDC L2
ENSG00000117410 ATP6V0B 551566 sc-eQTL 1.08e-01 0.23 0.142 0.949 cDC L2
ENSG00000117419 ERI3 170793 sc-eQTL 3.12e-01 -0.236 0.233 0.949 cDC L2
ENSG00000117425 PTCH2 -317200 sc-eQTL 6.39e-01 -0.0906 0.193 0.949 cDC L2
ENSG00000117450 PRDX1 -996994 sc-eQTL 9.90e-01 -0.0019 0.159 0.949 cDC L2
ENSG00000126088 UROD -484897 sc-eQTL 7.62e-01 0.0664 0.219 0.949 cDC L2
ENSG00000126091 ST3GAL3 820229 sc-eQTL 4.72e-01 -0.162 0.225 0.949 cDC L2
ENSG00000126106 TMEM53 -148428 sc-eQTL 8.54e-01 -0.0387 0.21 0.949 cDC L2
ENSG00000126107 HECTD3 -485271 sc-eQTL 6.71e-01 0.106 0.248 0.949 cDC L2
ENSG00000132768 DPH2 556053 sc-eQTL 6.98e-01 -0.09 0.231 0.949 cDC L2
ENSG00000132773 TOE1 -813999 sc-eQTL 4.33e-01 -0.191 0.243 0.949 cDC L2
ENSG00000132781 MUTYH -814840 sc-eQTL 5.40e-02 -0.436 0.225 0.949 cDC L2
ENSG00000142937 RPS8 -249198 sc-eQTL 6.47e-01 -0.048 0.105 0.949 cDC L2
ENSG00000159214 CCDC24 534694 sc-eQTL 9.95e-01 -0.00116 0.201 0.949 cDC L2
ENSG00000173846 PLK3 -274324 sc-eQTL 6.12e-01 0.0776 0.153 0.949 cDC L2
ENSG00000178028 DMAP1 312598 sc-eQTL 2.80e-02 0.507 0.229 0.949 cDC L2
ENSG00000187147 RNF220 120859 sc-eQTL 5.57e-01 0.119 0.202 0.949 cDC L2
ENSG00000198520 ARMH1 -148639 sc-eQTL 1.54e-01 -0.339 0.236 0.949 cDC L2
ENSG00000222009 BTBD19 -282429 sc-eQTL 6.52e-01 0.0959 0.213 0.949 cDC L2
ENSG00000066135 KDM4A 875904 sc-eQTL 4.99e-01 -0.181 0.267 0.948 gdT L2
ENSG00000070759 TESK2 -965110 sc-eQTL 4.99e-01 0.164 0.241 0.948 gdT L2
ENSG00000070785 EIF2B3 -460669 sc-eQTL 9.88e-02 0.416 0.25 0.948 gdT L2
ENSG00000117408 IPO13 579103 sc-eQTL 2.83e-01 -0.267 0.248 0.948 gdT L2
ENSG00000117410 ATP6V0B 551566 sc-eQTL 9.64e-01 0.0102 0.226 0.948 gdT L2
ENSG00000117411 B4GALT2 547110 sc-eQTL 7.03e-01 0.089 0.233 0.948 gdT L2
ENSG00000117419 ERI3 170793 sc-eQTL 1.20e-01 0.425 0.272 0.948 gdT L2
ENSG00000117450 PRDX1 -996994 sc-eQTL 3.69e-01 0.203 0.225 0.948 gdT L2
ENSG00000126088 UROD -484897 sc-eQTL 8.56e-01 -0.0422 0.231 0.948 gdT L2
ENSG00000126091 ST3GAL3 820229 sc-eQTL 5.45e-01 0.152 0.251 0.948 gdT L2
ENSG00000126106 TMEM53 -148428 sc-eQTL 4.44e-01 0.18 0.235 0.948 gdT L2
ENSG00000126107 HECTD3 -485271 sc-eQTL 5.15e-01 -0.174 0.267 0.948 gdT L2
ENSG00000132768 DPH2 556053 sc-eQTL 1.79e-02 0.581 0.243 0.948 gdT L2
ENSG00000132773 TOE1 -813999 sc-eQTL 4.33e-01 -0.186 0.236 0.948 gdT L2
ENSG00000132781 MUTYH -814840 sc-eQTL 4.34e-01 -0.197 0.251 0.948 gdT L2
ENSG00000142937 RPS8 -249198 sc-eQTL 2.95e-01 0.104 0.0987 0.948 gdT L2
ENSG00000142945 KIF2C -213765 sc-eQTL 3.00e-02 -0.316 0.144 0.948 gdT L2
ENSG00000162415 ZSWIM5 -780156 sc-eQTL 7.44e-01 0.0755 0.231 0.948 gdT L2
ENSG00000173846 PLK3 -274324 sc-eQTL 6.13e-01 -0.085 0.168 0.948 gdT L2
ENSG00000178028 DMAP1 312598 sc-eQTL 1.31e-01 0.378 0.249 0.948 gdT L2
ENSG00000186603 HPDL -800842 sc-eQTL 8.09e-01 -0.0489 0.202 0.948 gdT L2
ENSG00000187147 RNF220 120859 sc-eQTL 2.82e-01 0.223 0.207 0.948 gdT L2
ENSG00000198520 ARMH1 -148639 sc-eQTL 9.74e-01 0.00739 0.227 0.948 gdT L2
ENSG00000280670 CCDC163 -974026 sc-eQTL 2.84e-01 0.25 0.232 0.948 gdT L2
ENSG00000066135 KDM4A 875904 sc-eQTL 2.81e-02 -0.498 0.225 0.946 pDC L2
ENSG00000070759 TESK2 -965110 sc-eQTL 9.56e-01 -0.0129 0.232 0.946 pDC L2
ENSG00000070785 EIF2B3 -460669 sc-eQTL 2.65e-01 -0.267 0.239 0.946 pDC L2
ENSG00000117408 IPO13 579103 sc-eQTL 2.29e-01 0.284 0.235 0.946 pDC L2
ENSG00000117410 ATP6V0B 551566 sc-eQTL 1.82e-01 0.218 0.162 0.946 pDC L2
ENSG00000117419 ERI3 170793 sc-eQTL 8.83e-01 -0.0336 0.228 0.946 pDC L2
ENSG00000117425 PTCH2 -317200 sc-eQTL 8.44e-01 0.0368 0.187 0.946 pDC L2
ENSG00000117450 PRDX1 -996994 sc-eQTL 4.66e-01 -0.133 0.182 0.946 pDC L2
ENSG00000126088 UROD -484897 sc-eQTL 7.16e-01 -0.0821 0.226 0.946 pDC L2
ENSG00000126091 ST3GAL3 820229 sc-eQTL 5.37e-01 -0.138 0.222 0.946 pDC L2
ENSG00000126106 TMEM53 -148428 sc-eQTL 6.32e-01 -0.0948 0.197 0.946 pDC L2
ENSG00000126107 HECTD3 -485271 sc-eQTL 5.61e-01 0.137 0.235 0.946 pDC L2
ENSG00000132768 DPH2 556053 sc-eQTL 4.70e-01 -0.163 0.225 0.946 pDC L2
ENSG00000132773 TOE1 -813999 sc-eQTL 9.11e-02 0.402 0.236 0.946 pDC L2
ENSG00000132781 MUTYH -814840 sc-eQTL 5.97e-01 0.11 0.208 0.946 pDC L2
ENSG00000142937 RPS8 -249198 sc-eQTL 7.26e-01 -0.0473 0.134 0.946 pDC L2
ENSG00000159214 CCDC24 534694 sc-eQTL 7.68e-01 0.0593 0.201 0.946 pDC L2
ENSG00000173846 PLK3 -274324 sc-eQTL 2.96e-01 -0.189 0.181 0.946 pDC L2
ENSG00000178028 DMAP1 312598 sc-eQTL 6.46e-01 0.106 0.23 0.946 pDC L2
ENSG00000187147 RNF220 120859 sc-eQTL 5.56e-01 -0.128 0.217 0.946 pDC L2
ENSG00000198520 ARMH1 -148639 sc-eQTL 1.24e-01 0.322 0.209 0.946 pDC L2
ENSG00000222009 BTBD19 -282429 sc-eQTL 4.89e-01 0.159 0.23 0.946 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117408 IPO13 579103 eQTL 0.07 -0.0715 0.0394 0.00157 0.0 0.0412
ENSG00000117450 PRDX1 -996994 eQTL 0.0439 -0.0587 0.0291 0.0 0.0 0.0412
ENSG00000132768 DPH2 556053 eQTL 0.0332 0.0685 0.0321 0.0 0.0 0.0412
ENSG00000186603 HPDL -800852 eQTL 6.30e-02 0.128 0.0686 0.00116 0.0 0.0412
ENSG00000198520 ARMH1 -148660 eQTL 0.0225 -0.102 0.0447 0.00139 0.0 0.0412

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000132768 DPH2 556053 8.21e-07 6.04e-07 1.29e-07 3.25e-07 1.05e-07 2.16e-07 5.82e-07 1.01e-07 5.06e-07 1.15e-07 4.88e-07 3.21e-07 2e-06 1.48e-07 1.27e-07 1.13e-07 2.48e-07 3.04e-07 2.57e-07 3.34e-07 1.61e-07 2.7e-07 3.11e-07 1.32e-07 6.59e-07 2.36e-07 1.74e-07 2.68e-07 2.98e-07 7.79e-07 2.6e-07 5.45e-08 4.74e-08 2.98e-07 2.7e-07 2.78e-07 7.05e-07 1.21e-07 5.15e-07 2.99e-07 2.37e-07 4.02e-07 5.73e-08 4.23e-08 7.26e-08 1.3e-08 8.67e-08 2.1e-09 4.55e-08