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Genes within 1Mb (chr1:44398951:G:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 748802 sc-eQTL 9.53e-01 -0.0123 0.206 0.05 CD4_CTL L2
ENSG00000070785 EIF2B3 -587771 sc-eQTL 9.19e-01 -0.0212 0.208 0.05 CD4_CTL L2
ENSG00000117408 IPO13 452001 sc-eQTL 5.96e-01 -0.102 0.192 0.05 CD4_CTL L2
ENSG00000117410 ATP6V0B 424464 sc-eQTL 2.84e-01 -0.21 0.195 0.05 CD4_CTL L2
ENSG00000117419 ERI3 43691 sc-eQTL 3.69e-01 -0.187 0.208 0.05 CD4_CTL L2
ENSG00000126088 UROD -611999 sc-eQTL 4.40e-01 0.16 0.207 0.05 CD4_CTL L2
ENSG00000126091 ST3GAL3 693127 sc-eQTL 8.01e-02 0.361 0.205 0.05 CD4_CTL L2
ENSG00000126107 HECTD3 -612373 sc-eQTL 8.89e-01 0.0279 0.199 0.05 CD4_CTL L2
ENSG00000132768 DPH2 428951 sc-eQTL 2.09e-01 -0.255 0.202 0.05 CD4_CTL L2
ENSG00000132773 TOE1 -941101 sc-eQTL 4.08e-01 0.164 0.198 0.05 CD4_CTL L2
ENSG00000132781 MUTYH -941942 sc-eQTL 9.67e-02 0.337 0.202 0.05 CD4_CTL L2
ENSG00000142937 RPS8 -376300 sc-eQTL 7.60e-01 -0.0259 0.0848 0.05 CD4_CTL L2
ENSG00000162415 ZSWIM5 -907258 sc-eQTL 7.79e-01 -0.0504 0.18 0.05 CD4_CTL L2
ENSG00000173846 PLK3 -401426 sc-eQTL 2.20e-01 0.184 0.149 0.05 CD4_CTL L2
ENSG00000178028 DMAP1 185496 sc-eQTL 7.05e-01 0.0807 0.213 0.05 CD4_CTL L2
ENSG00000178922 HYI 944962 sc-eQTL 4.44e-01 0.139 0.181 0.05 CD4_CTL L2
ENSG00000187147 RNF220 -6243 sc-eQTL 1.11e-03 0.542 0.164 0.05 CD4_CTL L2
ENSG00000198520 ARMH1 -275741 sc-eQTL 6.77e-01 0.0641 0.154 0.05 CD4_CTL L2
ENSG00000066135 KDM4A 748802 sc-eQTL 1.93e-02 0.474 0.201 0.051 CD8_TCM L2
ENSG00000070785 EIF2B3 -587771 sc-eQTL 6.45e-01 0.0959 0.208 0.051 CD8_TCM L2
ENSG00000117408 IPO13 452001 sc-eQTL 6.08e-01 -0.1 0.195 0.051 CD8_TCM L2
ENSG00000117410 ATP6V0B 424464 sc-eQTL 4.49e-01 -0.13 0.171 0.051 CD8_TCM L2
ENSG00000117419 ERI3 43691 sc-eQTL 5.94e-01 -0.113 0.212 0.051 CD8_TCM L2
ENSG00000126088 UROD -611999 sc-eQTL 3.16e-01 -0.202 0.201 0.051 CD8_TCM L2
ENSG00000126091 ST3GAL3 693127 sc-eQTL 9.82e-01 -0.00472 0.207 0.051 CD8_TCM L2
ENSG00000126107 HECTD3 -612373 sc-eQTL 9.57e-01 -0.0115 0.213 0.051 CD8_TCM L2
ENSG00000132768 DPH2 428951 sc-eQTL 1.04e-01 0.332 0.203 0.051 CD8_TCM L2
ENSG00000132773 TOE1 -941101 sc-eQTL 2.53e-02 -0.422 0.187 0.051 CD8_TCM L2
ENSG00000132781 MUTYH -941942 sc-eQTL 7.43e-01 -0.0712 0.217 0.051 CD8_TCM L2
ENSG00000142937 RPS8 -376300 sc-eQTL 6.11e-01 -0.0545 0.107 0.051 CD8_TCM L2
ENSG00000162415 ZSWIM5 -907258 sc-eQTL 4.01e-01 0.158 0.187 0.051 CD8_TCM L2
ENSG00000173846 PLK3 -401426 sc-eQTL 6.89e-02 0.257 0.141 0.051 CD8_TCM L2
ENSG00000178028 DMAP1 185496 sc-eQTL 9.20e-01 -0.0215 0.213 0.051 CD8_TCM L2
ENSG00000178922 HYI 944962 sc-eQTL 3.19e-01 0.189 0.19 0.051 CD8_TCM L2
ENSG00000187147 RNF220 -6243 sc-eQTL 9.44e-01 -0.0125 0.177 0.051 CD8_TCM L2
ENSG00000198520 ARMH1 -275741 sc-eQTL 7.65e-01 0.0509 0.17 0.051 CD8_TCM L2
ENSG00000066135 KDM4A 748802 sc-eQTL 1.31e-01 -0.308 0.203 0.05 CD8_TEM L2
ENSG00000070785 EIF2B3 -587771 sc-eQTL 7.71e-03 0.521 0.193 0.05 CD8_TEM L2
ENSG00000117408 IPO13 452001 sc-eQTL 6.90e-01 0.0776 0.194 0.05 CD8_TEM L2
ENSG00000117410 ATP6V0B 424464 sc-eQTL 2.27e-01 0.227 0.187 0.05 CD8_TEM L2
ENSG00000117419 ERI3 43691 sc-eQTL 3.77e-01 0.196 0.221 0.05 CD8_TEM L2
ENSG00000126088 UROD -611999 sc-eQTL 6.91e-01 0.0776 0.195 0.05 CD8_TEM L2
ENSG00000126091 ST3GAL3 693127 sc-eQTL 7.24e-01 -0.0692 0.195 0.05 CD8_TEM L2
ENSG00000126107 HECTD3 -612373 sc-eQTL 9.41e-01 0.0148 0.202 0.05 CD8_TEM L2
ENSG00000132768 DPH2 428951 sc-eQTL 8.62e-01 -0.0347 0.199 0.05 CD8_TEM L2
ENSG00000132773 TOE1 -941101 sc-eQTL 1.21e-02 0.492 0.194 0.05 CD8_TEM L2
ENSG00000132781 MUTYH -941942 sc-eQTL 1.91e-01 0.267 0.203 0.05 CD8_TEM L2
ENSG00000142937 RPS8 -376300 sc-eQTL 3.35e-01 -0.113 0.117 0.05 CD8_TEM L2
ENSG00000162415 ZSWIM5 -907258 sc-eQTL 8.78e-01 -0.031 0.202 0.05 CD8_TEM L2
ENSG00000173846 PLK3 -401426 sc-eQTL 4.74e-01 -0.0985 0.137 0.05 CD8_TEM L2
ENSG00000178028 DMAP1 185496 sc-eQTL 5.34e-01 -0.132 0.212 0.05 CD8_TEM L2
ENSG00000178922 HYI 944962 sc-eQTL 4.19e-01 0.158 0.195 0.05 CD8_TEM L2
ENSG00000187147 RNF220 -6243 sc-eQTL 1.48e-01 -0.281 0.193 0.05 CD8_TEM L2
ENSG00000198520 ARMH1 -275741 sc-eQTL 7.13e-01 -0.0681 0.185 0.05 CD8_TEM L2
ENSG00000066135 KDM4A 748802 sc-eQTL 3.30e-01 0.21 0.215 0.05 NK_HLA L2
ENSG00000070785 EIF2B3 -587771 sc-eQTL 7.02e-02 0.378 0.207 0.05 NK_HLA L2
ENSG00000117408 IPO13 452001 sc-eQTL 3.47e-01 -0.185 0.196 0.05 NK_HLA L2
ENSG00000117410 ATP6V0B 424464 sc-eQTL 3.33e-01 0.196 0.202 0.05 NK_HLA L2
ENSG00000117411 B4GALT2 420008 sc-eQTL 1.81e-03 -0.583 0.184 0.05 NK_HLA L2
ENSG00000117419 ERI3 43691 sc-eQTL 2.01e-01 0.27 0.211 0.05 NK_HLA L2
ENSG00000126088 UROD -611999 sc-eQTL 7.46e-01 -0.0685 0.211 0.05 NK_HLA L2
ENSG00000126091 ST3GAL3 693127 sc-eQTL 7.93e-02 0.367 0.208 0.05 NK_HLA L2
ENSG00000126106 TMEM53 -275530 sc-eQTL 8.23e-02 -0.347 0.199 0.05 NK_HLA L2
ENSG00000126107 HECTD3 -612373 sc-eQTL 6.79e-01 0.0925 0.223 0.05 NK_HLA L2
ENSG00000132768 DPH2 428951 sc-eQTL 5.74e-02 -0.409 0.214 0.05 NK_HLA L2
ENSG00000132773 TOE1 -941101 sc-eQTL 9.31e-02 0.346 0.205 0.05 NK_HLA L2
ENSG00000132781 MUTYH -941942 sc-eQTL 5.81e-01 0.119 0.216 0.05 NK_HLA L2
ENSG00000142937 RPS8 -376300 sc-eQTL 6.32e-02 -0.169 0.0906 0.05 NK_HLA L2
ENSG00000159214 CCDC24 407592 sc-eQTL 5.07e-01 0.129 0.194 0.05 NK_HLA L2
ENSG00000162415 ZSWIM5 -907258 sc-eQTL 3.92e-02 0.383 0.184 0.05 NK_HLA L2
ENSG00000173846 PLK3 -401426 sc-eQTL 3.18e-02 -0.404 0.187 0.05 NK_HLA L2
ENSG00000178028 DMAP1 185496 sc-eQTL 2.50e-01 -0.245 0.212 0.05 NK_HLA L2
ENSG00000178922 HYI 944962 sc-eQTL 6.46e-01 -0.0934 0.203 0.05 NK_HLA L2
ENSG00000187147 RNF220 -6243 sc-eQTL 4.00e-01 0.154 0.182 0.05 NK_HLA L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000126106 TMEM53 -275530 eQTL 0.0516 -0.141 0.0726 0.00168 0.0 0.0334
ENSG00000142949 PTPRF 873764 pQTL 0.0273 0.16 0.0724 0.0 0.0 0.0347
ENSG00000178028 DMAP1 185496 eQTL 0.000311 -0.202 0.0558 0.00425 0.0 0.0334

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000142959 \N -389219 1.3e-06 9.44e-07 2.99e-07 6.38e-07 3.36e-07 4.7e-07 1.2e-06 4.04e-07 1.4e-06 5.11e-07 1.39e-06 6.58e-07 1.62e-06 2.78e-07 5.79e-07 9.16e-07 8.25e-07 6.25e-07 8.3e-07 6.34e-07 8.02e-07 1.56e-06 8.96e-07 6.35e-07 1.92e-06 7.32e-07 9.35e-07 6.89e-07 1.28e-06 1.07e-06 5.26e-07 3.01e-07 2.16e-07 6.64e-07 4.49e-07 4.91e-07 7.4e-07 2.87e-07 4.2e-07 3.2e-07 2.82e-07 1.22e-06 1.09e-07 1.95e-08 2.16e-07 1.27e-07 2.38e-07 1.16e-07 2.46e-07
ENSG00000222009 \N -409531 1.22e-06 9.09e-07 2.29e-07 4.72e-07 2.98e-07 4.59e-07 1.1e-06 3.97e-07 1.28e-06 4.31e-07 1.35e-06 5.86e-07 1.54e-06 2.67e-07 4.35e-07 8.12e-07 7.93e-07 5.45e-07 8.21e-07 6.84e-07 7.11e-07 1.27e-06 8.26e-07 6.28e-07 1.79e-06 6.01e-07 8.98e-07 5.63e-07 1.11e-06 9.73e-07 5.1e-07 2.1e-07 2.33e-07 6.69e-07 3.98e-07 4.62e-07 6.41e-07 2.38e-07 3.25e-07 1.92e-07 2.71e-07 1.09e-06 6.17e-08 1.26e-08 1.54e-07 1.17e-07 2.23e-07 5.92e-08 1.97e-07
ENSG00000225721 \N -376859 1.34e-06 9.29e-07 2.4e-07 7.39e-07 3.45e-07 5.15e-07 1.34e-06 4.01e-07 1.5e-06 6.23e-07 1.48e-06 7.43e-07 1.82e-06 2.79e-07 5.31e-07 9.07e-07 9.26e-07 6.58e-07 7.2e-07 6.46e-07 7.85e-07 1.63e-06 8.68e-07 6.34e-07 1.95e-06 7.4e-07 9.31e-07 7.26e-07 1.31e-06 1.11e-06 5.58e-07 2.71e-07 1.89e-07 6.27e-07 5.41e-07 5.24e-07 6.8e-07 2.97e-07 4.99e-07 2.93e-07 2.88e-07 1.36e-06 1.14e-07 2.68e-08 3.1e-07 1.22e-07 2.46e-07 1.42e-07 2.79e-07