logo

Genes within 1Mb (chr1:44377562:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 727413 sc-eQTL 4.08e-01 0.199 0.241 0.051 B_Activated L2
ENSG00000070785 EIF2B3 -609160 sc-eQTL 1.31e-01 0.348 0.229 0.051 B_Activated L2
ENSG00000117408 IPO13 430612 sc-eQTL 8.01e-01 0.0542 0.215 0.051 B_Activated L2
ENSG00000117410 ATP6V0B 403075 sc-eQTL 6.73e-01 -0.0898 0.212 0.051 B_Activated L2
ENSG00000117411 B4GALT2 398619 sc-eQTL 2.95e-01 -0.207 0.197 0.051 B_Activated L2
ENSG00000117419 ERI3 22302 sc-eQTL 6.99e-02 -0.452 0.248 0.051 B_Activated L2
ENSG00000117425 PTCH2 -465691 sc-eQTL 1.26e-01 -0.214 0.139 0.051 B_Activated L2
ENSG00000126088 UROD -633388 sc-eQTL 2.89e-01 0.256 0.241 0.051 B_Activated L2
ENSG00000126091 ST3GAL3 671738 sc-eQTL 3.53e-01 -0.209 0.225 0.051 B_Activated L2
ENSG00000126106 TMEM53 -296919 sc-eQTL 4.10e-01 0.168 0.204 0.051 B_Activated L2
ENSG00000126107 HECTD3 -633762 sc-eQTL 6.14e-01 0.119 0.235 0.051 B_Activated L2
ENSG00000132768 DPH2 407562 sc-eQTL 5.60e-01 -0.138 0.236 0.051 B_Activated L2
ENSG00000132773 TOE1 -962490 sc-eQTL 1.03e-01 -0.374 0.228 0.051 B_Activated L2
ENSG00000132781 MUTYH -963331 sc-eQTL 1.60e-01 0.337 0.239 0.051 B_Activated L2
ENSG00000142937 RPS8 -397689 sc-eQTL 5.06e-01 0.0801 0.12 0.051 B_Activated L2
ENSG00000159214 CCDC24 386203 sc-eQTL 7.35e-01 -0.0687 0.203 0.051 B_Activated L2
ENSG00000159479 MED8 987754 sc-eQTL 4.86e-01 0.163 0.234 0.051 B_Activated L2
ENSG00000173846 PLK3 -422815 sc-eQTL 3.70e-01 0.196 0.218 0.051 B_Activated L2
ENSG00000178028 DMAP1 164107 sc-eQTL 9.32e-02 -0.414 0.245 0.051 B_Activated L2
ENSG00000178922 HYI 923573 sc-eQTL 5.27e-01 -0.145 0.229 0.051 B_Activated L2
ENSG00000187147 RNF220 -27632 sc-eQTL 6.34e-01 -0.107 0.224 0.051 B_Activated L2
ENSG00000198198 SZT2 987680 sc-eQTL 9.77e-01 0.00647 0.223 0.051 B_Activated L2
ENSG00000198520 ARMH1 -297130 sc-eQTL 1.05e-01 -0.356 0.218 0.051 B_Activated L2
ENSG00000066135 KDM4A 727413 sc-eQTL 5.23e-01 -0.139 0.217 0.053 NK_HLA L2
ENSG00000070785 EIF2B3 -609160 sc-eQTL 3.54e-01 0.196 0.211 0.053 NK_HLA L2
ENSG00000117408 IPO13 430612 sc-eQTL 5.65e-01 0.114 0.198 0.053 NK_HLA L2
ENSG00000117410 ATP6V0B 403075 sc-eQTL 5.19e-01 -0.132 0.204 0.053 NK_HLA L2
ENSG00000117411 B4GALT2 398619 sc-eQTL 5.41e-01 -0.117 0.191 0.053 NK_HLA L2
ENSG00000117419 ERI3 22302 sc-eQTL 3.77e-01 -0.189 0.213 0.053 NK_HLA L2
ENSG00000126088 UROD -633388 sc-eQTL 5.30e-02 0.411 0.211 0.053 NK_HLA L2
ENSG00000126091 ST3GAL3 671738 sc-eQTL 1.64e-01 0.294 0.21 0.053 NK_HLA L2
ENSG00000126106 TMEM53 -296919 sc-eQTL 5.47e-01 0.122 0.202 0.053 NK_HLA L2
ENSG00000126107 HECTD3 -633762 sc-eQTL 4.94e-02 0.442 0.223 0.053 NK_HLA L2
ENSG00000132768 DPH2 407562 sc-eQTL 5.56e-01 -0.128 0.218 0.053 NK_HLA L2
ENSG00000132773 TOE1 -962490 sc-eQTL 1.13e-01 0.33 0.207 0.053 NK_HLA L2
ENSG00000132781 MUTYH -963331 sc-eQTL 8.09e-01 -0.0527 0.218 0.053 NK_HLA L2
ENSG00000142937 RPS8 -397689 sc-eQTL 2.20e-01 0.113 0.0919 0.053 NK_HLA L2
ENSG00000159214 CCDC24 386203 sc-eQTL 1.78e-01 -0.263 0.195 0.053 NK_HLA L2
ENSG00000159479 MED8 987754 sc-eQTL 3.43e-01 -0.215 0.226 0.053 NK_HLA L2
ENSG00000162415 ZSWIM5 -928647 sc-eQTL 1.39e-01 0.278 0.187 0.053 NK_HLA L2
ENSG00000173846 PLK3 -422815 sc-eQTL 6.23e-01 0.094 0.191 0.053 NK_HLA L2
ENSG00000178028 DMAP1 164107 sc-eQTL 7.27e-01 0.0752 0.215 0.053 NK_HLA L2
ENSG00000178922 HYI 923573 sc-eQTL 7.85e-01 0.056 0.205 0.053 NK_HLA L2
ENSG00000187147 RNF220 -27632 sc-eQTL 3.37e-01 0.177 0.184 0.053 NK_HLA L2
ENSG00000198198 SZT2 987680 sc-eQTL 8.45e-01 -0.0356 0.182 0.053 NK_HLA L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117408 IPO13 430612 eQTL 8.96e-06 0.137 0.0306 0.0 0.0 0.0711
ENSG00000117410 ATP6V0B 403075 eQTL 0.00582 0.05 0.0181 0.0 0.0 0.0711
ENSG00000142949 PTPRF 852375 pQTL 0.00621 -0.134 0.049 0.0 0.0 0.0744
ENSG00000159214 CCDC24 386203 eQTL 0.0287 0.153 0.0697 0.0 0.0 0.0711
ENSG00000159479 MED8 987754 eQTL 0.0324 0.0539 0.0251 0.0 0.0 0.0711
ENSG00000178028 DMAP1 164107 eQTL 2e-27 -0.414 0.037 0.0 0.0 0.0711
ENSG00000229431 AL139289.1 992449 eQTL 0.00958 0.192 0.074 0.00138 0.0 0.0711

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070785 \N -609160 2.95e-07 1.7e-07 6.04e-08 2.41e-07 1.03e-07 8.45e-08 1.99e-07 5.85e-08 1.66e-07 6.75e-08 1.62e-07 1.11e-07 2.74e-07 8e-08 5.43e-08 7.97e-08 4.31e-08 1.56e-07 7.29e-08 6.02e-08 1.27e-07 1.31e-07 1.58e-07 3.42e-08 2.09e-07 1.23e-07 1.19e-07 1.26e-07 1.34e-07 1.05e-07 1.21e-07 4.78e-08 3.56e-08 9.58e-08 3.97e-08 3.43e-08 5.62e-08 8.17e-08 5.27e-08 7.39e-08 6.14e-08 1.6e-07 3.26e-08 1.27e-08 5.32e-08 1.71e-08 1.2e-07 1.89e-09 4.83e-08
ENSG00000117408 IPO13 430612 6.97e-07 5.6e-07 9.16e-08 4.36e-07 1.05e-07 1.44e-07 4.68e-07 9.26e-08 3.66e-07 1.6e-07 4.39e-07 2.33e-07 9.37e-07 1.17e-07 1.45e-07 1.49e-07 2.11e-07 3.12e-07 2.12e-07 1.65e-07 1.57e-07 2.63e-07 3.03e-07 1.25e-07 6.65e-07 2.07e-07 2.43e-07 2.68e-07 2.66e-07 4.3e-07 2.54e-07 6.31e-08 5.77e-08 1.36e-07 3.05e-07 1.19e-07 1.4e-07 8.21e-08 7.9e-08 9.5e-09 5.43e-08 4.95e-07 5.78e-08 8.96e-08 1.48e-07 1.35e-08 8.94e-08 0.0 5.56e-08
ENSG00000117410 ATP6V0B 403075 8.15e-07 6.65e-07 1.05e-07 4.14e-07 1.07e-07 1.64e-07 5.31e-07 1.21e-07 4.74e-07 2.01e-07 5.93e-07 3.21e-07 1.03e-06 1.52e-07 1.9e-07 1.92e-07 3.24e-07 3.67e-07 2.65e-07 1.97e-07 1.91e-07 3.1e-07 3.45e-07 1.63e-07 8.33e-07 2.33e-07 2.71e-07 2.74e-07 3.43e-07 5.99e-07 3.43e-07 5.45e-08 4.42e-08 1.52e-07 3.38e-07 1.44e-07 1.89e-07 9.46e-08 7.56e-08 4.2e-08 8.35e-08 6.19e-07 7.23e-08 1.38e-07 1.69e-07 1.95e-08 1.05e-07 2.75e-09 5.93e-08
ENSG00000178028 DMAP1 164107 2.77e-06 3.17e-06 2.69e-07 2.04e-06 4.39e-07 7.75e-07 1.83e-06 6.3e-07 2.27e-06 7.42e-07 2.43e-06 1.26e-06 6.3e-06 1.35e-06 5.7e-07 1.19e-06 1.19e-06 2.18e-06 1.42e-06 1.21e-06 6.53e-07 2.34e-06 2.33e-06 1.05e-06 4.08e-06 1.22e-06 1.29e-06 1.8e-06 1.8e-06 2.29e-06 2.02e-06 4.33e-07 4.71e-07 1.43e-06 1.67e-06 9.85e-07 9.08e-07 4.2e-07 1.23e-06 3.23e-07 1.52e-07 4.08e-06 6.52e-07 1.61e-07 3.98e-07 2.82e-07 2.74e-07 1.43e-07 2.24e-07