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Genes within 1Mb (chr1:44369457:GC:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 719308 sc-eQTL 4.08e-01 0.199 0.241 0.051 B_Activated L2
ENSG00000070785 EIF2B3 -617265 sc-eQTL 1.31e-01 0.348 0.229 0.051 B_Activated L2
ENSG00000117408 IPO13 422507 sc-eQTL 8.01e-01 0.0542 0.215 0.051 B_Activated L2
ENSG00000117410 ATP6V0B 394970 sc-eQTL 6.73e-01 -0.0898 0.212 0.051 B_Activated L2
ENSG00000117411 B4GALT2 390514 sc-eQTL 2.95e-01 -0.207 0.197 0.051 B_Activated L2
ENSG00000117419 ERI3 14197 sc-eQTL 6.99e-02 -0.452 0.248 0.051 B_Activated L2
ENSG00000117425 PTCH2 -473796 sc-eQTL 1.26e-01 -0.214 0.139 0.051 B_Activated L2
ENSG00000126088 UROD -641493 sc-eQTL 2.89e-01 0.256 0.241 0.051 B_Activated L2
ENSG00000126091 ST3GAL3 663633 sc-eQTL 3.53e-01 -0.209 0.225 0.051 B_Activated L2
ENSG00000126106 TMEM53 -305024 sc-eQTL 4.10e-01 0.168 0.204 0.051 B_Activated L2
ENSG00000126107 HECTD3 -641867 sc-eQTL 6.14e-01 0.119 0.235 0.051 B_Activated L2
ENSG00000132768 DPH2 399457 sc-eQTL 5.60e-01 -0.138 0.236 0.051 B_Activated L2
ENSG00000132773 TOE1 -970595 sc-eQTL 1.03e-01 -0.374 0.228 0.051 B_Activated L2
ENSG00000132781 MUTYH -971436 sc-eQTL 1.60e-01 0.337 0.239 0.051 B_Activated L2
ENSG00000142937 RPS8 -405794 sc-eQTL 5.06e-01 0.0801 0.12 0.051 B_Activated L2
ENSG00000159214 CCDC24 378098 sc-eQTL 7.35e-01 -0.0687 0.203 0.051 B_Activated L2
ENSG00000159479 MED8 979649 sc-eQTL 4.86e-01 0.163 0.234 0.051 B_Activated L2
ENSG00000173846 PLK3 -430920 sc-eQTL 3.70e-01 0.196 0.218 0.051 B_Activated L2
ENSG00000178028 DMAP1 156002 sc-eQTL 9.32e-02 -0.414 0.245 0.051 B_Activated L2
ENSG00000178922 HYI 915468 sc-eQTL 5.27e-01 -0.145 0.229 0.051 B_Activated L2
ENSG00000187147 RNF220 -35737 sc-eQTL 6.34e-01 -0.107 0.224 0.051 B_Activated L2
ENSG00000198198 SZT2 979575 sc-eQTL 9.77e-01 0.00647 0.223 0.051 B_Activated L2
ENSG00000198520 ARMH1 -305235 sc-eQTL 1.05e-01 -0.356 0.218 0.051 B_Activated L2
ENSG00000066135 KDM4A 719308 sc-eQTL 5.23e-01 -0.139 0.217 0.053 NK_HLA L2
ENSG00000070785 EIF2B3 -617265 sc-eQTL 3.54e-01 0.196 0.211 0.053 NK_HLA L2
ENSG00000117408 IPO13 422507 sc-eQTL 5.65e-01 0.114 0.198 0.053 NK_HLA L2
ENSG00000117410 ATP6V0B 394970 sc-eQTL 5.19e-01 -0.132 0.204 0.053 NK_HLA L2
ENSG00000117411 B4GALT2 390514 sc-eQTL 5.41e-01 -0.117 0.191 0.053 NK_HLA L2
ENSG00000117419 ERI3 14197 sc-eQTL 3.77e-01 -0.189 0.213 0.053 NK_HLA L2
ENSG00000126088 UROD -641493 sc-eQTL 5.30e-02 0.411 0.211 0.053 NK_HLA L2
ENSG00000126091 ST3GAL3 663633 sc-eQTL 1.64e-01 0.294 0.21 0.053 NK_HLA L2
ENSG00000126106 TMEM53 -305024 sc-eQTL 5.47e-01 0.122 0.202 0.053 NK_HLA L2
ENSG00000126107 HECTD3 -641867 sc-eQTL 4.94e-02 0.442 0.223 0.053 NK_HLA L2
ENSG00000132768 DPH2 399457 sc-eQTL 5.56e-01 -0.128 0.218 0.053 NK_HLA L2
ENSG00000132773 TOE1 -970595 sc-eQTL 1.13e-01 0.33 0.207 0.053 NK_HLA L2
ENSG00000132781 MUTYH -971436 sc-eQTL 8.09e-01 -0.0527 0.218 0.053 NK_HLA L2
ENSG00000142937 RPS8 -405794 sc-eQTL 2.20e-01 0.113 0.0919 0.053 NK_HLA L2
ENSG00000159214 CCDC24 378098 sc-eQTL 1.78e-01 -0.263 0.195 0.053 NK_HLA L2
ENSG00000159479 MED8 979649 sc-eQTL 3.43e-01 -0.215 0.226 0.053 NK_HLA L2
ENSG00000162415 ZSWIM5 -936752 sc-eQTL 1.39e-01 0.278 0.187 0.053 NK_HLA L2
ENSG00000173846 PLK3 -430920 sc-eQTL 6.23e-01 0.094 0.191 0.053 NK_HLA L2
ENSG00000178028 DMAP1 156002 sc-eQTL 7.27e-01 0.0752 0.215 0.053 NK_HLA L2
ENSG00000178922 HYI 915468 sc-eQTL 7.85e-01 0.056 0.205 0.053 NK_HLA L2
ENSG00000187147 RNF220 -35737 sc-eQTL 3.37e-01 0.177 0.184 0.053 NK_HLA L2
ENSG00000198198 SZT2 979575 sc-eQTL 8.45e-01 -0.0356 0.182 0.053 NK_HLA L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117408 IPO13 422507 eQTL 6.24e-06 0.14 0.0307 0.0 0.0 0.0711
ENSG00000117410 ATP6V0B 394970 eQTL 0.00408 0.0524 0.0182 0.0 0.0 0.0711
ENSG00000142949 PTPRF 844270 pQTL 0.00898 -0.129 0.0494 0.0 0.0 0.0733
ENSG00000159214 CCDC24 378098 eQTL 0.0205 0.163 0.0701 0.0 0.0 0.0711
ENSG00000159479 MED8 979649 eQTL 0.0384 0.0524 0.0253 0.0 0.0 0.0711
ENSG00000178028 DMAP1 156002 eQTL 4.97e-28 -0.421 0.0372 0.0 0.0 0.0711
ENSG00000229431 AL139289.1 984344 eQTL 0.00756 0.199 0.0744 0.00151 0.0 0.0711

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070785 \N -617265 2.77e-07 1.1e-07 3.62e-08 1.84e-07 9.65e-08 9.48e-08 1.49e-07 5.21e-08 1.41e-07 5.42e-08 1.62e-07 8.59e-08 1.69e-07 6.21e-08 6.02e-08 7.5e-08 3.94e-08 1.14e-07 5.19e-08 3.74e-08 1.04e-07 1.28e-07 1.39e-07 4.67e-08 1.32e-07 1.14e-07 1.12e-07 8.71e-08 1.09e-07 1.12e-07 9.64e-08 3.95e-08 3.28e-08 9.52e-08 8.76e-08 3.93e-08 5.64e-08 9.56e-08 8.3e-08 3.09e-08 3.84e-08 1.31e-07 5.27e-08 1.43e-08 9.88e-08 9.65e-09 1.27e-07 4.41e-09 4.61e-08
ENSG00000117408 IPO13 422507 8.15e-07 1.56e-07 5.93e-08 2.44e-07 9.24e-08 1.97e-07 3.44e-07 5.37e-08 1.75e-07 1.5e-07 2.07e-07 2.04e-07 5.81e-07 8.15e-08 1.27e-07 9.11e-08 5.27e-08 2.04e-07 7.09e-08 4.21e-08 1.18e-07 2.45e-07 2.26e-07 3.03e-08 2.74e-07 1.43e-07 1.23e-07 1.17e-07 1.87e-07 1.06e-07 1.59e-07 3.98e-08 4.97e-08 1.9e-07 1.27e-07 3.3e-08 5.02e-08 8.89e-08 6.58e-08 4.19e-08 3.98e-08 2.5e-07 3.37e-08 1.29e-08 6.92e-08 7.64e-08 1.18e-07 3.83e-09 4.91e-08
ENSG00000117410 ATP6V0B 394970 9.39e-07 1.83e-07 6.55e-08 2.92e-07 9.87e-08 2.63e-07 4.25e-07 5.48e-08 2.01e-07 2.01e-07 2.84e-07 2.98e-07 7.53e-07 8.54e-08 1.71e-07 1.1e-07 6.81e-08 2.56e-07 7.42e-08 5.04e-08 1.33e-07 3.1e-07 2.77e-07 2.79e-08 3.55e-07 1.76e-07 1.31e-07 1.44e-07 2.57e-07 1.33e-07 1.93e-07 3.7e-08 5.41e-08 2.87e-07 2.35e-07 4.77e-08 4.99e-08 7.61e-08 6.28e-08 3.67e-08 4.64e-08 3.06e-07 1.21e-08 3.39e-08 5.87e-08 1.27e-07 1.11e-07 3.78e-09 5.04e-08
ENSG00000178028 DMAP1 156002 4.48e-06 2.53e-06 6.93e-07 2.02e-06 4.73e-07 1.57e-06 2.96e-06 4.42e-07 3.03e-06 1.41e-06 2.49e-06 2.51e-06 5.56e-06 7.47e-07 9e-07 2e-06 9.79e-07 2.13e-06 1.47e-06 7.62e-07 1.8e-06 4.85e-06 3.45e-06 5.38e-07 4.27e-06 1.26e-06 1.46e-06 1.81e-06 3.8e-06 1.88e-06 1.99e-06 7.28e-08 8.14e-07 1.95e-06 2.16e-06 9.71e-07 6.81e-07 4.74e-07 8.54e-07 3.79e-07 1.67e-07 5.14e-06 6.37e-07 2.03e-07 1.85e-07 1.67e-06 8.94e-07 2.51e-07 9.23e-08