Genes within 1Mb (chr1:44283240:C:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 633091 sc-eQTL 5.81e-01 -0.123 0.223 0.05 NK_HLA L2
ENSG00000066322 ELOVL1 915166 sc-eQTL 6.14e-01 0.107 0.212 0.05 NK_HLA L2
ENSG00000070785 EIF2B3 -703482 sc-eQTL 4.92e-01 0.149 0.216 0.05 NK_HLA L2
ENSG00000117408 IPO13 336290 sc-eQTL 8.17e-01 -0.0471 0.203 0.05 NK_HLA L2
ENSG00000117410 ATP6V0B 308753 sc-eQTL 6.07e-01 -0.108 0.21 0.05 NK_HLA L2
ENSG00000117411 B4GALT2 304297 sc-eQTL 5.10e-01 -0.129 0.195 0.05 NK_HLA L2
ENSG00000117419 ERI3 -72020 sc-eQTL 3.50e-01 -0.204 0.218 0.05 NK_HLA L2
ENSG00000126088 UROD -727710 sc-eQTL 2.13e-02 0.501 0.216 0.05 NK_HLA L2
ENSG00000126091 ST3GAL3 577416 sc-eQTL 1.74e-01 0.294 0.216 0.05 NK_HLA L2
ENSG00000126106 TMEM53 -391241 sc-eQTL 4.41e-01 0.16 0.207 0.05 NK_HLA L2
ENSG00000126107 HECTD3 -728084 sc-eQTL 1.54e-01 0.329 0.23 0.05 NK_HLA L2
ENSG00000132768 DPH2 313240 sc-eQTL 5.86e-01 -0.122 0.223 0.05 NK_HLA L2
ENSG00000142937 RPS8 -492011 sc-eQTL 6.69e-02 0.173 0.0938 0.05 NK_HLA L2
ENSG00000159214 CCDC24 291881 sc-eQTL 1.95e-01 -0.26 0.2 0.05 NK_HLA L2
ENSG00000159479 MED8 893432 sc-eQTL 5.00e-01 -0.157 0.232 0.05 NK_HLA L2
ENSG00000173846 PLK3 -517137 sc-eQTL 6.90e-01 0.0781 0.196 0.05 NK_HLA L2
ENSG00000178028 DMAP1 69785 sc-eQTL 8.85e-01 0.0319 0.22 0.05 NK_HLA L2
ENSG00000178922 HYI 829251 sc-eQTL 7.07e-01 0.079 0.21 0.05 NK_HLA L2
ENSG00000187147 RNF220 -121954 sc-eQTL 1.50e-01 0.272 0.188 0.05 NK_HLA L2
ENSG00000198198 SZT2 893358 sc-eQTL 9.44e-01 0.0131 0.187 0.05 NK_HLA L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066322 ELOVL1 915166 eQTL 0.0286 0.0689 0.0314 0.0 0.0 0.0697
ENSG00000117399 CDC20 924259 eQTL 0.0477 0.0535 0.027 0.00101 0.0 0.0697
ENSG00000117408 IPO13 336290 eQTL 6.13e-06 0.142 0.0312 0.0 0.0 0.0697
ENSG00000117410 ATP6V0B 308753 eQTL 0.00107 0.0606 0.0185 0.0 0.0 0.0697
ENSG00000142949 PTPRF 758053 pQTL 0.00349 -0.146 0.0499 0.0 0.0 0.0744
ENSG00000159214 CCDC24 291881 eQTL 0.00396 0.205 0.0711 0.0 0.0 0.0697
ENSG00000178028 DMAP1 69785 eQTL 1.35e-36 -0.488 0.037 0.00406 0.00666 0.0697
ENSG00000229431 AL139289.1 898127 eQTL 0.00523 0.211 0.0755 0.00182 0.0 0.0697


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066322 ELOVL1 915166 2.66e-07 1.25e-07 3.88e-08 1.86e-07 8.83e-08 9.71e-08 1.41e-07 5.33e-08 1.4e-07 4.4e-08 1.62e-07 8.14e-08 1.3e-07 6.76e-08 6.04e-08 7.26e-08 3.88e-08 1.14e-07 5.39e-08 4.42e-08 1.04e-07 1.26e-07 1.3e-07 4.26e-08 1.33e-07 1.19e-07 1.08e-07 9.65e-08 1.02e-07 1.1e-07 9.73e-08 3.7e-08 3.3e-08 8.68e-08 8.74e-08 3.76e-08 5.42e-08 9.61e-08 6.37e-08 3.82e-08 4.39e-08 1.35e-07 4.89e-08 7.23e-09 6.92e-08 1.83e-08 1.22e-07 3.83e-09 4.79e-08
ENSG00000117399 CDC20 924259 2.66e-07 1.25e-07 3.88e-08 1.82e-07 8.83e-08 9.71e-08 1.41e-07 5.33e-08 1.4e-07 4.4e-08 1.56e-07 8.14e-08 1.3e-07 6.76e-08 6.02e-08 7.26e-08 3.88e-08 1.14e-07 5.36e-08 4.42e-08 1.04e-07 1.27e-07 1.3e-07 4.26e-08 1.33e-07 1.19e-07 1.11e-07 9.65e-08 1.02e-07 1.1e-07 9.73e-08 3.7e-08 3.28e-08 8.68e-08 8.74e-08 3.76e-08 5.42e-08 9.61e-08 6.37e-08 4.19e-08 3.82e-08 1.35e-07 4.7e-08 7.2e-09 6.92e-08 1.83e-08 1.23e-07 3.83e-09 4.79e-08
ENSG00000117408 IPO13 336290 9.36e-07 9.53e-07 2.54e-07 1e-06 1.16e-07 3.2e-07 7.44e-07 2.62e-07 1.08e-06 2.72e-07 1.35e-06 5.81e-07 1.35e-06 2.82e-07 5.4e-07 5.87e-07 8.26e-07 5.31e-07 5.31e-07 6.96e-07 2.89e-07 9.46e-07 5.63e-07 3.21e-07 1.85e-06 2.48e-07 6.91e-07 6.88e-07 6.62e-07 8.5e-07 5.42e-07 1.56e-07 1.99e-07 3.66e-07 4.17e-07 3.21e-07 7.11e-07 1.5e-07 4.26e-07 3.12e-07 3.01e-07 1.12e-06 1.93e-07 4.18e-08 1.69e-07 6.87e-08 1.76e-07 7.69e-08 5.93e-08
ENSG00000117410 ATP6V0B 308753 1.25e-06 1.13e-06 2.53e-07 1.26e-06 2.14e-07 4.67e-07 1.1e-06 3.22e-07 1.2e-06 3.87e-07 1.52e-06 6.62e-07 1.63e-06 5.23e-07 4.14e-07 7.95e-07 9.2e-07 5.8e-07 7.73e-07 6.26e-07 3.99e-07 1.24e-06 7.63e-07 4.87e-07 2.05e-06 3.17e-07 9.41e-07 9.25e-07 8.81e-07 1e-06 6.04e-07 2.52e-07 2.86e-07 5.6e-07 5.65e-07 4.34e-07 7.44e-07 1.65e-07 4.92e-07 2.1e-07 2.84e-07 1.5e-06 3.7e-07 6.49e-08 1.87e-07 9.77e-08 2.45e-07 5.32e-08 6.04e-08
ENSG00000132768 \N 313240 1.21e-06 1.08e-06 2.88e-07 1.18e-06 1.87e-07 4.39e-07 1.07e-06 3.28e-07 1.15e-06 3.8e-07 1.48e-06 6.2e-07 1.57e-06 4.66e-07 4.96e-07 7.95e-07 9.08e-07 5.54e-07 7.4e-07 6.49e-07 3.91e-07 1.19e-06 7.16e-07 4.62e-07 1.97e-06 2.99e-07 8.98e-07 9.25e-07 8.47e-07 9.58e-07 5.91e-07 2.1e-07 2.66e-07 5.46e-07 5.41e-07 4.12e-07 7.53e-07 1.7e-07 4.57e-07 2.8e-07 2.67e-07 1.43e-06 3.49e-07 6.46e-08 1.93e-07 7.91e-08 2.3e-07 6.95e-08 5.86e-08
ENSG00000178028 DMAP1 69785 1.33e-05 2.06e-05 3.18e-06 1.21e-05 2.45e-06 6.64e-06 2.07e-05 3.5e-06 1.72e-05 8.28e-06 2.11e-05 8.6e-06 2.76e-05 9.56e-06 5.23e-06 1.06e-05 1.02e-05 1.37e-05 4.21e-06 4.32e-06 8.13e-06 1.68e-05 1.56e-05 4.8e-06 2.91e-05 5.23e-06 8.03e-06 7.92e-06 1.66e-05 1.18e-05 1.16e-05 1.19e-06 1.66e-06 4.1e-06 7.8e-06 3.41e-06 1.91e-06 2.41e-06 3.01e-06 2.17e-06 1.2e-06 2.21e-05 2.67e-06 2.52e-07 9.9e-07 2.48e-06 3.43e-06 8.47e-07 5.01e-07