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Genes within 1Mb (chr1:44261999:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 611850 sc-eQTL 1.31e-01 -0.325 0.214 0.051 B_Activated L2
ENSG00000066322 ELOVL1 893925 sc-eQTL 9.14e-01 0.024 0.223 0.051 B_Activated L2
ENSG00000070785 EIF2B3 -724723 sc-eQTL 7.44e-01 0.0675 0.206 0.051 B_Activated L2
ENSG00000117395 EBNA1BP2 991063 sc-eQTL 4.39e-01 -0.173 0.223 0.051 B_Activated L2
ENSG00000117408 IPO13 315049 sc-eQTL 2.87e-01 0.204 0.191 0.051 B_Activated L2
ENSG00000117410 ATP6V0B 287512 sc-eQTL 7.12e-01 -0.0702 0.19 0.051 B_Activated L2
ENSG00000117411 B4GALT2 283056 sc-eQTL 8.79e-01 -0.027 0.176 0.051 B_Activated L2
ENSG00000117419 ERI3 -93261 sc-eQTL 1.69e-01 0.307 0.222 0.051 B_Activated L2
ENSG00000117425 PTCH2 -581254 sc-eQTL 6.70e-01 0.0533 0.125 0.051 B_Activated L2
ENSG00000126088 UROD -748951 sc-eQTL 6.28e-01 -0.105 0.216 0.051 B_Activated L2
ENSG00000126091 ST3GAL3 556175 sc-eQTL 5.13e-01 -0.132 0.201 0.051 B_Activated L2
ENSG00000126106 TMEM53 -412482 sc-eQTL 8.90e-01 -0.0252 0.183 0.051 B_Activated L2
ENSG00000126107 HECTD3 -749325 sc-eQTL 5.86e-02 0.395 0.208 0.051 B_Activated L2
ENSG00000132768 DPH2 291999 sc-eQTL 4.22e-01 0.17 0.211 0.051 B_Activated L2
ENSG00000142937 RPS8 -513252 sc-eQTL 6.03e-01 -0.0559 0.107 0.051 B_Activated L2
ENSG00000159214 CCDC24 270640 sc-eQTL 4.70e-01 0.131 0.181 0.051 B_Activated L2
ENSG00000159479 MED8 872191 sc-eQTL 4.02e-01 0.175 0.209 0.051 B_Activated L2
ENSG00000173846 PLK3 -538378 sc-eQTL 8.75e-01 0.0309 0.196 0.051 B_Activated L2
ENSG00000178028 DMAP1 48544 sc-eQTL 7.95e-01 -0.0576 0.221 0.051 B_Activated L2
ENSG00000178922 HYI 808010 sc-eQTL 3.56e-01 -0.189 0.204 0.051 B_Activated L2
ENSG00000187147 RNF220 -143195 sc-eQTL 5.22e-01 0.129 0.2 0.051 B_Activated L2
ENSG00000198198 SZT2 872117 sc-eQTL 4.32e-01 0.157 0.199 0.051 B_Activated L2
ENSG00000198520 ARMH1 -412693 sc-eQTL 4.60e-01 -0.145 0.196 0.051 B_Activated L2
ENSG00000066135 KDM4A 611850 sc-eQTL 6.47e-01 -0.0973 0.212 0.05 CD4_CTL L2
ENSG00000066322 ELOVL1 893925 sc-eQTL 4.20e-01 -0.16 0.198 0.05 CD4_CTL L2
ENSG00000070785 EIF2B3 -724723 sc-eQTL 6.57e-01 0.0951 0.214 0.05 CD4_CTL L2
ENSG00000117395 EBNA1BP2 991063 sc-eQTL 6.91e-01 -0.0864 0.217 0.05 CD4_CTL L2
ENSG00000117408 IPO13 315049 sc-eQTL 7.89e-01 -0.0529 0.198 0.05 CD4_CTL L2
ENSG00000117410 ATP6V0B 287512 sc-eQTL 3.23e-01 -0.199 0.201 0.05 CD4_CTL L2
ENSG00000117419 ERI3 -93261 sc-eQTL 2.62e-01 -0.24 0.214 0.05 CD4_CTL L2
ENSG00000126088 UROD -748951 sc-eQTL 5.41e-01 0.13 0.213 0.05 CD4_CTL L2
ENSG00000126091 ST3GAL3 556175 sc-eQTL 3.51e-02 0.447 0.211 0.05 CD4_CTL L2
ENSG00000126107 HECTD3 -749325 sc-eQTL 3.14e-01 0.207 0.205 0.05 CD4_CTL L2
ENSG00000132768 DPH2 291999 sc-eQTL 9.48e-01 0.0135 0.209 0.05 CD4_CTL L2
ENSG00000142937 RPS8 -513252 sc-eQTL 4.51e-01 0.0659 0.0872 0.05 CD4_CTL L2
ENSG00000159479 MED8 872191 sc-eQTL 6.97e-01 -0.0787 0.202 0.05 CD4_CTL L2
ENSG00000173846 PLK3 -538378 sc-eQTL 1.69e-01 0.212 0.153 0.05 CD4_CTL L2
ENSG00000178028 DMAP1 48544 sc-eQTL 5.34e-01 0.136 0.219 0.05 CD4_CTL L2
ENSG00000178922 HYI 808010 sc-eQTL 3.79e-01 0.164 0.186 0.05 CD4_CTL L2
ENSG00000187147 RNF220 -143195 sc-eQTL 1.18e-03 0.555 0.169 0.05 CD4_CTL L2
ENSG00000198198 SZT2 872117 sc-eQTL 3.02e-03 -0.59 0.197 0.05 CD4_CTL L2
ENSG00000198520 ARMH1 -412693 sc-eQTL 4.45e-01 0.121 0.158 0.05 CD4_CTL L2
ENSG00000066135 KDM4A 611850 sc-eQTL 2.26e-03 0.617 0.199 0.051 CD8_TCM L2
ENSG00000066322 ELOVL1 893925 sc-eQTL 6.47e-01 0.095 0.207 0.051 CD8_TCM L2
ENSG00000070785 EIF2B3 -724723 sc-eQTL 7.99e-01 0.0533 0.209 0.051 CD8_TCM L2
ENSG00000117395 EBNA1BP2 991063 sc-eQTL 5.85e-01 -0.114 0.208 0.051 CD8_TCM L2
ENSG00000117408 IPO13 315049 sc-eQTL 4.13e-01 -0.16 0.195 0.051 CD8_TCM L2
ENSG00000117410 ATP6V0B 287512 sc-eQTL 5.43e-01 0.104 0.171 0.051 CD8_TCM L2
ENSG00000117419 ERI3 -93261 sc-eQTL 9.48e-01 -0.0139 0.213 0.051 CD8_TCM L2
ENSG00000126088 UROD -748951 sc-eQTL 1.11e-01 -0.321 0.201 0.051 CD8_TCM L2
ENSG00000126091 ST3GAL3 556175 sc-eQTL 8.07e-01 -0.0508 0.208 0.051 CD8_TCM L2
ENSG00000126107 HECTD3 -749325 sc-eQTL 9.19e-01 0.0217 0.213 0.051 CD8_TCM L2
ENSG00000132768 DPH2 291999 sc-eQTL 1.79e-01 0.276 0.204 0.051 CD8_TCM L2
ENSG00000142937 RPS8 -513252 sc-eQTL 4.13e-01 0.0879 0.107 0.051 CD8_TCM L2
ENSG00000159479 MED8 872191 sc-eQTL 1.55e-01 0.278 0.195 0.051 CD8_TCM L2
ENSG00000173846 PLK3 -538378 sc-eQTL 8.44e-01 0.0279 0.142 0.051 CD8_TCM L2
ENSG00000178028 DMAP1 48544 sc-eQTL 3.02e-01 0.22 0.213 0.051 CD8_TCM L2
ENSG00000178922 HYI 808010 sc-eQTL 2.27e-01 0.23 0.19 0.051 CD8_TCM L2
ENSG00000187147 RNF220 -143195 sc-eQTL 2.60e-01 -0.2 0.177 0.051 CD8_TCM L2
ENSG00000198198 SZT2 872117 sc-eQTL 3.81e-02 0.392 0.188 0.051 CD8_TCM L2
ENSG00000198520 ARMH1 -412693 sc-eQTL 5.06e-01 0.114 0.171 0.051 CD8_TCM L2
ENSG00000066135 KDM4A 611850 sc-eQTL 8.77e-02 -0.343 0.2 0.053 CD8_TEM L2
ENSG00000066322 ELOVL1 893925 sc-eQTL 9.56e-01 0.0103 0.188 0.053 CD8_TEM L2
ENSG00000070785 EIF2B3 -724723 sc-eQTL 2.90e-02 0.421 0.192 0.053 CD8_TEM L2
ENSG00000117395 EBNA1BP2 991063 sc-eQTL 6.99e-01 -0.0746 0.193 0.053 CD8_TEM L2
ENSG00000117408 IPO13 315049 sc-eQTL 9.25e-02 0.321 0.19 0.053 CD8_TEM L2
ENSG00000117410 ATP6V0B 287512 sc-eQTL 6.75e-02 0.337 0.183 0.053 CD8_TEM L2
ENSG00000117419 ERI3 -93261 sc-eQTL 3.56e-01 0.201 0.217 0.053 CD8_TEM L2
ENSG00000126088 UROD -748951 sc-eQTL 8.60e-01 -0.0341 0.192 0.053 CD8_TEM L2
ENSG00000126091 ST3GAL3 556175 sc-eQTL 6.95e-01 -0.0755 0.192 0.053 CD8_TEM L2
ENSG00000126107 HECTD3 -749325 sc-eQTL 7.09e-01 0.0742 0.198 0.053 CD8_TEM L2
ENSG00000132768 DPH2 291999 sc-eQTL 4.39e-01 -0.152 0.196 0.053 CD8_TEM L2
ENSG00000142937 RPS8 -513252 sc-eQTL 8.62e-01 0.02 0.115 0.053 CD8_TEM L2
ENSG00000159479 MED8 872191 sc-eQTL 7.90e-01 0.0505 0.189 0.053 CD8_TEM L2
ENSG00000173846 PLK3 -538378 sc-eQTL 9.36e-01 -0.0108 0.135 0.053 CD8_TEM L2
ENSG00000178028 DMAP1 48544 sc-eQTL 7.18e-01 -0.0757 0.209 0.053 CD8_TEM L2
ENSG00000178922 HYI 808010 sc-eQTL 2.05e-01 0.243 0.191 0.053 CD8_TEM L2
ENSG00000187147 RNF220 -143195 sc-eQTL 8.84e-02 -0.325 0.19 0.053 CD8_TEM L2
ENSG00000198198 SZT2 872117 sc-eQTL 8.47e-01 -0.0385 0.199 0.053 CD8_TEM L2
ENSG00000198520 ARMH1 -412693 sc-eQTL 5.91e-01 -0.0981 0.182 0.053 CD8_TEM L2
ENSG00000066135 KDM4A 611850 sc-eQTL 4.41e-01 0.152 0.197 0.051 NK_CD56bright L2
ENSG00000066322 ELOVL1 893925 sc-eQTL 7.35e-02 0.363 0.202 0.051 NK_CD56bright L2
ENSG00000070785 EIF2B3 -724723 sc-eQTL 7.20e-01 0.0741 0.206 0.051 NK_CD56bright L2
ENSG00000117395 EBNA1BP2 991063 sc-eQTL 3.55e-01 -0.194 0.209 0.051 NK_CD56bright L2
ENSG00000117408 IPO13 315049 sc-eQTL 1.91e-01 0.264 0.201 0.051 NK_CD56bright L2
ENSG00000117410 ATP6V0B 287512 sc-eQTL 7.19e-01 0.0726 0.201 0.051 NK_CD56bright L2
ENSG00000117411 B4GALT2 283056 sc-eQTL 1.88e-01 -0.239 0.181 0.051 NK_CD56bright L2
ENSG00000117419 ERI3 -93261 sc-eQTL 7.62e-01 0.063 0.208 0.051 NK_CD56bright L2
ENSG00000126088 UROD -748951 sc-eQTL 9.66e-01 0.00761 0.177 0.051 NK_CD56bright L2
ENSG00000126091 ST3GAL3 556175 sc-eQTL 7.11e-01 0.0765 0.206 0.051 NK_CD56bright L2
ENSG00000126106 TMEM53 -412482 sc-eQTL 8.52e-01 0.0368 0.198 0.051 NK_CD56bright L2
ENSG00000126107 HECTD3 -749325 sc-eQTL 3.57e-01 0.185 0.201 0.051 NK_CD56bright L2
ENSG00000132768 DPH2 291999 sc-eQTL 8.57e-01 0.0363 0.201 0.051 NK_CD56bright L2
ENSG00000142937 RPS8 -513252 sc-eQTL 4.91e-01 0.0664 0.0963 0.051 NK_CD56bright L2
ENSG00000159214 CCDC24 270640 sc-eQTL 9.09e-02 0.334 0.197 0.051 NK_CD56bright L2
ENSG00000159479 MED8 872191 sc-eQTL 5.50e-01 -0.106 0.177 0.051 NK_CD56bright L2
ENSG00000173846 PLK3 -538378 sc-eQTL 8.88e-01 0.0255 0.181 0.051 NK_CD56bright L2
ENSG00000178028 DMAP1 48544 sc-eQTL 2.00e-01 0.275 0.214 0.051 NK_CD56bright L2
ENSG00000178922 HYI 808010 sc-eQTL 3.50e-01 0.18 0.192 0.051 NK_CD56bright L2
ENSG00000187147 RNF220 -143195 sc-eQTL 2.62e-01 -0.2 0.178 0.051 NK_CD56bright L2
ENSG00000198198 SZT2 872117 sc-eQTL 6.64e-01 0.0842 0.194 0.051 NK_CD56bright L2
ENSG00000066135 KDM4A 611850 sc-eQTL 9.95e-01 -0.00139 0.216 0.05 NK_HLA L2
ENSG00000066322 ELOVL1 893925 sc-eQTL 6.98e-01 0.08 0.206 0.05 NK_HLA L2
ENSG00000070785 EIF2B3 -724723 sc-eQTL 1.01e-01 0.343 0.208 0.05 NK_HLA L2
ENSG00000117395 EBNA1BP2 991063 sc-eQTL 5.20e-01 0.144 0.223 0.05 NK_HLA L2
ENSG00000117408 IPO13 315049 sc-eQTL 5.43e-01 -0.12 0.197 0.05 NK_HLA L2
ENSG00000117410 ATP6V0B 287512 sc-eQTL 9.79e-01 0.00538 0.203 0.05 NK_HLA L2
ENSG00000117411 B4GALT2 283056 sc-eQTL 6.17e-04 -0.64 0.184 0.05 NK_HLA L2
ENSG00000117419 ERI3 -93261 sc-eQTL 2.41e-01 0.248 0.211 0.05 NK_HLA L2
ENSG00000126088 UROD -748951 sc-eQTL 2.67e-01 -0.235 0.211 0.05 NK_HLA L2
ENSG00000126091 ST3GAL3 556175 sc-eQTL 3.74e-01 0.187 0.21 0.05 NK_HLA L2
ENSG00000126106 TMEM53 -412482 sc-eQTL 5.41e-02 -0.386 0.199 0.05 NK_HLA L2
ENSG00000126107 HECTD3 -749325 sc-eQTL 8.65e-01 -0.0383 0.224 0.05 NK_HLA L2
ENSG00000132768 DPH2 291999 sc-eQTL 5.46e-01 -0.131 0.216 0.05 NK_HLA L2
ENSG00000142937 RPS8 -513252 sc-eQTL 1.60e-01 -0.129 0.0912 0.05 NK_HLA L2
ENSG00000159214 CCDC24 270640 sc-eQTL 6.15e-01 -0.098 0.194 0.05 NK_HLA L2
ENSG00000159479 MED8 872191 sc-eQTL 7.11e-01 0.0836 0.225 0.05 NK_HLA L2
ENSG00000173846 PLK3 -538378 sc-eQTL 2.56e-01 -0.215 0.189 0.05 NK_HLA L2
ENSG00000178028 DMAP1 48544 sc-eQTL 3.07e-01 -0.218 0.213 0.05 NK_HLA L2
ENSG00000178922 HYI 808010 sc-eQTL 4.55e-01 0.152 0.203 0.05 NK_HLA L2
ENSG00000187147 RNF220 -143195 sc-eQTL 9.97e-01 -0.000637 0.183 0.05 NK_HLA L2
ENSG00000198198 SZT2 872117 sc-eQTL 1.39e-01 0.267 0.18 0.05 NK_HLA L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117410 ATP6V0B 287512 eQTL 0.0286 -0.0502 0.0229 0.0 0.0 0.0437
ENSG00000126106 TMEM53 -412482 eQTL 0.018 -0.152 0.0641 0.00563 0.00118 0.0437
ENSG00000132768 DPH2 291999 eQTL 0.0369 0.0662 0.0317 0.0 0.0 0.0437
ENSG00000178028 DMAP1 48544 eQTL 0.00146 -0.158 0.0494 0.0 0.0 0.0437
ENSG00000198198 SZT2 872117 eQTL 0.00306 -0.0866 0.0292 0.003 0.00166 0.0437

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117410 ATP6V0B 287512 8.25e-07 2.5e-07 7.76e-08 3.58e-07 1.1e-07 1.32e-07 4.25e-07 6.12e-08 2.04e-07 1.28e-07 2.68e-07 2.11e-07 4.88e-07 9.48e-08 7.35e-08 1.14e-07 7.3e-08 2.96e-07 9.69e-08 8.1e-08 1.24e-07 2.15e-07 2.11e-07 6.52e-08 6.18e-07 1.43e-07 1.83e-07 1.46e-07 1.87e-07 1.89e-07 1.76e-07 8.48e-08 4.97e-08 1.21e-07 2.85e-07 3.18e-08 6.24e-08 7.25e-08 5.84e-08 7.17e-08 4.32e-08 2.9e-07 2.16e-08 1.22e-08 8.01e-08 1.32e-08 9.1e-08 2.07e-09 4.67e-08
ENSG00000126088 \N -748951 2.66e-07 1.08e-07 3.44e-08 1.76e-07 1.02e-07 9.13e-08 1.39e-07 5.24e-08 1.36e-07 4.23e-08 1.61e-07 7.58e-08 1.23e-07 6.07e-08 4.89e-08 7.87e-08 5.12e-08 1.07e-07 5.22e-08 3.29e-08 1.03e-07 1.31e-07 1.31e-07 4.99e-08 1.32e-07 1.09e-07 1.13e-07 8.45e-08 1.03e-07 1.1e-07 9.5e-08 3.95e-08 2.74e-08 8.3e-08 9.14e-08 4.19e-08 5.26e-08 9.06e-08 8.14e-08 3.64e-08 3.51e-08 1.39e-07 3.82e-08 2.1e-08 9.21e-08 1.75e-08 1.37e-07 4.6e-09 4.74e-08
ENSG00000142945 \N -477819 2.76e-07 1.16e-07 3.71e-08 1.82e-07 8.83e-08 9.65e-08 1.49e-07 5.49e-08 1.4e-07 4.57e-08 1.56e-07 8.59e-08 1.41e-07 6.56e-08 5.84e-08 7.17e-08 3.88e-08 1.21e-07 5.36e-08 4.45e-08 1.04e-07 1.26e-07 1.32e-07 4.05e-08 1.4e-07 1.19e-07 1.06e-07 9.15e-08 1.05e-07 1.12e-07 9.91e-08 3.64e-08 3.28e-08 8.34e-08 7.02e-08 3.99e-08 4.84e-08 9.6e-08 7.58e-08 3.54e-08 5.14e-08 1.33e-07 5.22e-08 1.43e-08 5.43e-08 1.99e-08 1.23e-07 4.04e-09 4.79e-08
ENSG00000198198 SZT2 872117 2.66e-07 1.11e-07 3.28e-08 1.68e-07 1.02e-07 9.05e-08 1.36e-07 5.24e-08 1.32e-07 4.23e-08 1.59e-07 7.6e-08 1.21e-07 6.07e-08 4.89e-08 7.76e-08 5.15e-08 1.06e-07 5.12e-08 3.15e-08 1.03e-07 1.31e-07 1.31e-07 5.01e-08 1.33e-07 1.09e-07 1.11e-07 8.49e-08 1.05e-07 1.09e-07 9.5e-08 3.95e-08 2.74e-08 8.26e-08 9.56e-08 4.26e-08 4.95e-08 8.75e-08 8.3e-08 3.69e-08 3.16e-08 1.4e-07 4.12e-08 1.95e-08 1.01e-07 1.78e-08 1.44e-07 4.7e-09 4.61e-08
ENSG00000222009 \N -546483 2.69e-07 1.01e-07 3.62e-08 1.82e-07 9.02e-08 9.71e-08 1.38e-07 5.35e-08 1.41e-07 4.38e-08 1.6e-07 7.75e-08 1.3e-07 6.21e-08 5.4e-08 7.89e-08 4.94e-08 1.14e-07 5.19e-08 4.03e-08 1.06e-07 1.28e-07 1.3e-07 4.54e-08 1.33e-07 1.13e-07 1.11e-07 8.7e-08 1.02e-07 1.11e-07 9.58e-08 3.96e-08 2.91e-08 8.65e-08 8.94e-08 3.93e-08 4.63e-08 9.13e-08 8.3e-08 3.03e-08 4.35e-08 1.35e-07 4.14e-08 7.72e-09 6.92e-08 1.67e-08 1.24e-07 4.2e-09 4.91e-08