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Genes within 1Mb (chr1:44200314:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 550165 sc-eQTL 9.19e-01 0.0242 0.237 0.051 B_Activated L2
ENSG00000066322 ELOVL1 832240 sc-eQTL 7.40e-01 0.0813 0.245 0.051 B_Activated L2
ENSG00000070785 EIF2B3 -786408 sc-eQTL 1.45e-01 0.329 0.225 0.051 B_Activated L2
ENSG00000117395 EBNA1BP2 929378 sc-eQTL 3.51e-01 -0.229 0.245 0.051 B_Activated L2
ENSG00000117408 IPO13 253364 sc-eQTL 9.31e-01 0.0182 0.211 0.051 B_Activated L2
ENSG00000117410 ATP6V0B 225827 sc-eQTL 8.28e-01 -0.0453 0.208 0.051 B_Activated L2
ENSG00000117411 B4GALT2 221371 sc-eQTL 2.25e-01 -0.235 0.193 0.051 B_Activated L2
ENSG00000117419 ERI3 -154946 sc-eQTL 1.48e-01 -0.355 0.244 0.051 B_Activated L2
ENSG00000117425 PTCH2 -642939 sc-eQTL 5.30e-01 -0.0864 0.137 0.051 B_Activated L2
ENSG00000126088 UROD -810636 sc-eQTL 1.85e-01 0.315 0.236 0.051 B_Activated L2
ENSG00000126091 ST3GAL3 494490 sc-eQTL 4.08e-01 -0.183 0.221 0.051 B_Activated L2
ENSG00000126106 TMEM53 -474167 sc-eQTL 4.50e-01 0.152 0.2 0.051 B_Activated L2
ENSG00000126107 HECTD3 -811010 sc-eQTL 5.46e-01 0.139 0.23 0.051 B_Activated L2
ENSG00000132768 DPH2 230314 sc-eQTL 2.79e-01 -0.251 0.231 0.051 B_Activated L2
ENSG00000142937 RPS8 -574937 sc-eQTL 2.99e-01 0.123 0.118 0.051 B_Activated L2
ENSG00000159214 CCDC24 208955 sc-eQTL 7.26e-01 -0.0699 0.199 0.051 B_Activated L2
ENSG00000159479 MED8 810506 sc-eQTL 4.76e-01 0.164 0.23 0.051 B_Activated L2
ENSG00000173846 PLK3 -600063 sc-eQTL 3.74e-01 0.191 0.215 0.051 B_Activated L2
ENSG00000178028 DMAP1 -13141 sc-eQTL 4.27e-01 -0.193 0.242 0.051 B_Activated L2
ENSG00000178922 HYI 746325 sc-eQTL 2.99e-01 -0.234 0.224 0.051 B_Activated L2
ENSG00000187147 RNF220 -204880 sc-eQTL 8.32e-01 0.0469 0.22 0.051 B_Activated L2
ENSG00000198198 SZT2 810432 sc-eQTL 7.63e-01 0.066 0.219 0.051 B_Activated L2
ENSG00000198520 ARMH1 -474378 sc-eQTL 7.55e-02 -0.383 0.214 0.051 B_Activated L2
ENSG00000066135 KDM4A 550165 sc-eQTL 5.68e-01 -0.125 0.218 0.053 NK_HLA L2
ENSG00000066322 ELOVL1 832240 sc-eQTL 4.68e-01 0.151 0.207 0.053 NK_HLA L2
ENSG00000070785 EIF2B3 -786408 sc-eQTL 3.84e-01 0.184 0.211 0.053 NK_HLA L2
ENSG00000117395 EBNA1BP2 929378 sc-eQTL 8.46e-01 0.0436 0.225 0.053 NK_HLA L2
ENSG00000117408 IPO13 253364 sc-eQTL 8.54e-01 -0.0365 0.198 0.053 NK_HLA L2
ENSG00000117410 ATP6V0B 225827 sc-eQTL 5.39e-01 -0.126 0.205 0.053 NK_HLA L2
ENSG00000117411 B4GALT2 221371 sc-eQTL 5.51e-01 -0.114 0.191 0.053 NK_HLA L2
ENSG00000117419 ERI3 -154946 sc-eQTL 4.43e-01 -0.164 0.214 0.053 NK_HLA L2
ENSG00000126088 UROD -810636 sc-eQTL 1.28e-02 0.528 0.21 0.053 NK_HLA L2
ENSG00000126091 ST3GAL3 494490 sc-eQTL 1.65e-01 0.294 0.211 0.053 NK_HLA L2
ENSG00000126106 TMEM53 -474167 sc-eQTL 5.50e-01 0.121 0.202 0.053 NK_HLA L2
ENSG00000126107 HECTD3 -811010 sc-eQTL 1.96e-01 0.292 0.225 0.053 NK_HLA L2
ENSG00000132768 DPH2 230314 sc-eQTL 8.02e-01 -0.0547 0.218 0.053 NK_HLA L2
ENSG00000142937 RPS8 -574937 sc-eQTL 4.00e-02 0.189 0.0914 0.053 NK_HLA L2
ENSG00000159214 CCDC24 208955 sc-eQTL 1.46e-01 -0.285 0.195 0.053 NK_HLA L2
ENSG00000159479 MED8 810506 sc-eQTL 3.98e-01 -0.192 0.227 0.053 NK_HLA L2
ENSG00000173846 PLK3 -600063 sc-eQTL 5.82e-01 0.105 0.191 0.053 NK_HLA L2
ENSG00000178028 DMAP1 -13141 sc-eQTL 9.83e-01 -0.00468 0.215 0.053 NK_HLA L2
ENSG00000178922 HYI 746325 sc-eQTL 7.32e-01 0.0703 0.205 0.053 NK_HLA L2
ENSG00000187147 RNF220 -204880 sc-eQTL 3.13e-01 0.186 0.184 0.053 NK_HLA L2
ENSG00000198198 SZT2 810432 sc-eQTL 8.75e-01 -0.0287 0.182 0.053 NK_HLA L2
ENSG00000066135 KDM4A 550165 sc-eQTL 4.44e-01 0.163 0.213 0.051 intMono L2
ENSG00000066322 ELOVL1 832240 sc-eQTL 4.32e-01 0.147 0.187 0.051 intMono L2
ENSG00000070785 EIF2B3 -786408 sc-eQTL 4.45e-01 -0.164 0.214 0.051 intMono L2
ENSG00000117395 EBNA1BP2 929378 sc-eQTL 5.80e-01 -0.118 0.213 0.051 intMono L2
ENSG00000117408 IPO13 253364 sc-eQTL 1.01e-01 -0.327 0.198 0.051 intMono L2
ENSG00000117410 ATP6V0B 225827 sc-eQTL 7.10e-01 -0.048 0.129 0.051 intMono L2
ENSG00000117419 ERI3 -154946 sc-eQTL 6.32e-01 -0.101 0.211 0.051 intMono L2
ENSG00000117425 PTCH2 -642939 sc-eQTL 2.87e-01 0.186 0.174 0.051 intMono L2
ENSG00000126088 UROD -810636 sc-eQTL 4.21e-01 -0.168 0.209 0.051 intMono L2
ENSG00000126091 ST3GAL3 494490 sc-eQTL 9.50e-01 -0.0126 0.202 0.051 intMono L2
ENSG00000126106 TMEM53 -474167 sc-eQTL 3.75e-01 0.175 0.197 0.051 intMono L2
ENSG00000126107 HECTD3 -811010 sc-eQTL 4.64e-01 0.151 0.206 0.051 intMono L2
ENSG00000132768 DPH2 230314 sc-eQTL 8.84e-01 -0.0299 0.205 0.051 intMono L2
ENSG00000142937 RPS8 -574937 sc-eQTL 7.29e-01 0.0306 0.0881 0.051 intMono L2
ENSG00000159214 CCDC24 208955 sc-eQTL 4.44e-01 0.148 0.193 0.051 intMono L2
ENSG00000159479 MED8 810506 sc-eQTL 1.02e-01 0.273 0.166 0.051 intMono L2
ENSG00000173846 PLK3 -600063 sc-eQTL 2.18e-01 -0.18 0.146 0.051 intMono L2
ENSG00000178028 DMAP1 -13141 sc-eQTL 1.86e-02 -0.492 0.207 0.051 intMono L2
ENSG00000178922 HYI 746325 sc-eQTL 1.27e-01 -0.295 0.193 0.051 intMono L2
ENSG00000187147 RNF220 -204880 sc-eQTL 8.79e-01 -0.0283 0.185 0.051 intMono L2
ENSG00000198198 SZT2 810432 sc-eQTL 9.92e-01 -0.00196 0.2 0.051 intMono L2
ENSG00000198520 ARMH1 -474378 sc-eQTL 5.46e-01 0.129 0.214 0.051 intMono L2
ENSG00000222009 BTBD19 -608168 sc-eQTL 8.51e-02 -0.337 0.194 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066322 ELOVL1 832240 eQTL 0.0444 0.0618 0.0307 0.0 0.0 0.0711
ENSG00000117408 IPO13 253364 eQTL 2.25e-06 0.145 0.0305 0.0 0.0 0.0711
ENSG00000117410 ATP6V0B 225827 eQTL 0.000546 0.0625 0.018 0.0 0.0 0.0711
ENSG00000117411 B4GALT2 221371 eQTL 0.0897 0.0831 0.0489 0.00112 0.0 0.0711
ENSG00000142949 PTPRF 675127 pQTL 0.00268 -0.146 0.0484 0.0 0.0 0.0766
ENSG00000159214 CCDC24 208955 eQTL 0.00214 0.214 0.0694 0.0 0.0 0.0711
ENSG00000178028 DMAP1 -13141 eQTL 3.01e-36 -0.474 0.0362 0.00102 0.00149 0.0711
ENSG00000229431 AL139289.1 815201 eQTL 0.00797 0.196 0.0738 0.00151 0.0 0.0711

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066322 ELOVL1 832240 2.95e-07 1.53e-07 6.15e-08 2.2e-07 1.05e-07 8.21e-08 2.24e-07 5.68e-08 1.75e-07 9.35e-08 1.61e-07 1.31e-07 2.29e-07 8e-08 6.12e-08 9.48e-08 4.31e-08 1.77e-07 7.16e-08 5.87e-08 1.18e-07 1.65e-07 1.58e-07 3.49e-08 2.17e-07 1.51e-07 1.22e-07 1.28e-07 1.32e-07 1.06e-07 1.21e-07 3.72e-08 3.65e-08 9.8e-08 3.51e-08 2.85e-08 3.7e-08 8.37e-08 6.21e-08 6.55e-08 3.6e-08 1.55e-07 5.08e-08 7.72e-09 3.32e-08 1.71e-08 8.81e-08 1.89e-09 4.98e-08
ENSG00000117399 \N 841333 2.95e-07 1.53e-07 6.15e-08 2.2e-07 1.05e-07 8.21e-08 2.16e-07 5.68e-08 1.71e-07 8.53e-08 1.61e-07 1.23e-07 2.24e-07 8e-08 5.97e-08 9.6e-08 4.18e-08 1.77e-07 7.09e-08 5.87e-08 1.18e-07 1.56e-07 1.58e-07 3.49e-08 2.17e-07 1.43e-07 1.22e-07 1.26e-07 1.32e-07 1.06e-07 1.14e-07 3.66e-08 3.56e-08 9.78e-08 3.71e-08 2.79e-08 3.91e-08 8.89e-08 6.35e-08 6.43e-08 4.51e-08 1.59e-07 5.08e-08 7.78e-09 3.29e-08 1.68e-08 9.29e-08 1.89e-09 4.98e-08
ENSG00000117408 IPO13 253364 1.47e-06 2.12e-06 3e-07 1.42e-06 4.58e-07 6.48e-07 1.32e-06 5.61e-07 1.76e-06 6.77e-07 1.84e-06 1.28e-06 2.88e-06 6.86e-07 5.41e-07 1.24e-06 1.12e-06 1.35e-06 5.56e-07 1.04e-06 7.87e-07 1.96e-06 1.56e-06 9.14e-07 2.59e-06 1.22e-06 1.15e-06 1.38e-06 1.71e-06 1.39e-06 7.57e-07 2.65e-07 4.47e-07 8.98e-07 8.35e-07 6.66e-07 8.32e-07 3.15e-07 9.49e-07 3.76e-07 3.2e-07 2.52e-06 3.34e-07 1.66e-07 3.49e-07 3.24e-07 4.03e-07 1.43e-07 1.79e-07
ENSG00000117419 \N -154946 4.03e-06 4.65e-06 8.52e-07 2.56e-06 1.59e-06 1.03e-06 4.08e-06 9.8e-07 4.55e-06 2.08e-06 4.16e-06 3.2e-06 7.58e-06 2.04e-06 1.45e-06 3.83e-06 1.86e-06 2.88e-06 1.41e-06 1.19e-06 3.04e-06 4.6e-06 3.6e-06 1.43e-06 5.46e-06 1.97e-06 2.51e-06 1.83e-06 4.28e-06 3.62e-06 1.98e-06 4.2e-07 4.82e-07 1.48e-06 2.08e-06 1.04e-06 1.04e-06 3.91e-07 8.6e-07 5.91e-07 1e-06 5.14e-06 4.8e-07 1.62e-07 5.77e-07 6.92e-07 9.64e-07 2.72e-07 5.88e-07
ENSG00000132768 \N 230314 1.97e-06 2.46e-06 3.08e-07 1.67e-06 6.09e-07 7.17e-07 1.61e-06 6.45e-07 1.75e-06 8.05e-07 1.93e-06 1.45e-06 3.5e-06 1.04e-06 9.5e-07 1.66e-06 9.73e-07 1.85e-06 7.93e-07 1.28e-06 1.12e-06 2.51e-06 2.04e-06 1.03e-06 3.46e-06 1.21e-06 1.31e-06 1.79e-06 1.99e-06 1.65e-06 1.18e-06 3.26e-07 5.45e-07 1.26e-06 9.26e-07 8.92e-07 8.38e-07 4.9e-07 1.13e-06 3.45e-07 4.59e-07 2.83e-06 4.23e-07 2.07e-07 2.87e-07 3.09e-07 5.48e-07 2.53e-07 1.76e-07
ENSG00000178028 DMAP1 -13141 2.84e-05 3.34e-05 7.54e-06 1.88e-05 8.29e-06 1.85e-05 5.17e-05 6.73e-06 3.6e-05 1.83e-05 4.33e-05 2.11e-05 6.43e-05 1.63e-05 8.67e-06 2.74e-05 2.05e-05 3.03e-05 1.3e-05 1.2e-05 2.58e-05 3.87e-05 3.6e-05 1.42e-05 5.79e-05 1.31e-05 2.09e-05 1.75e-05 4.16e-05 4.18e-05 2.42e-05 3.44e-06 6.08e-06 1.16e-05 1.39e-05 1.01e-05 6.25e-06 5.61e-06 8.89e-06 4.93e-06 2.7e-06 4.24e-05 3.87e-06 6.52e-07 3.8e-06 6.42e-06 6.16e-06 2.59e-06 3.28e-06