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Genes within 1Mb (chr1:44192512:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 542363 sc-eQTL 9.19e-01 0.0242 0.237 0.051 B_Activated L2
ENSG00000066322 ELOVL1 824438 sc-eQTL 7.40e-01 0.0813 0.245 0.051 B_Activated L2
ENSG00000070785 EIF2B3 -794210 sc-eQTL 1.45e-01 0.329 0.225 0.051 B_Activated L2
ENSG00000117395 EBNA1BP2 921576 sc-eQTL 3.51e-01 -0.229 0.245 0.051 B_Activated L2
ENSG00000117408 IPO13 245562 sc-eQTL 9.31e-01 0.0182 0.211 0.051 B_Activated L2
ENSG00000117410 ATP6V0B 218025 sc-eQTL 8.28e-01 -0.0453 0.208 0.051 B_Activated L2
ENSG00000117411 B4GALT2 213569 sc-eQTL 2.25e-01 -0.235 0.193 0.051 B_Activated L2
ENSG00000117419 ERI3 -162748 sc-eQTL 1.48e-01 -0.355 0.244 0.051 B_Activated L2
ENSG00000117425 PTCH2 -650741 sc-eQTL 5.30e-01 -0.0864 0.137 0.051 B_Activated L2
ENSG00000126088 UROD -818438 sc-eQTL 1.85e-01 0.315 0.236 0.051 B_Activated L2
ENSG00000126091 ST3GAL3 486688 sc-eQTL 4.08e-01 -0.183 0.221 0.051 B_Activated L2
ENSG00000126106 TMEM53 -481969 sc-eQTL 4.50e-01 0.152 0.2 0.051 B_Activated L2
ENSG00000126107 HECTD3 -818812 sc-eQTL 5.46e-01 0.139 0.23 0.051 B_Activated L2
ENSG00000132768 DPH2 222512 sc-eQTL 2.79e-01 -0.251 0.231 0.051 B_Activated L2
ENSG00000142937 RPS8 -582739 sc-eQTL 2.99e-01 0.123 0.118 0.051 B_Activated L2
ENSG00000159214 CCDC24 201153 sc-eQTL 7.26e-01 -0.0699 0.199 0.051 B_Activated L2
ENSG00000159479 MED8 802704 sc-eQTL 4.76e-01 0.164 0.23 0.051 B_Activated L2
ENSG00000173846 PLK3 -607865 sc-eQTL 3.74e-01 0.191 0.215 0.051 B_Activated L2
ENSG00000178028 DMAP1 -20943 sc-eQTL 4.27e-01 -0.193 0.242 0.051 B_Activated L2
ENSG00000178922 HYI 738523 sc-eQTL 2.99e-01 -0.234 0.224 0.051 B_Activated L2
ENSG00000187147 RNF220 -212682 sc-eQTL 8.32e-01 0.0469 0.22 0.051 B_Activated L2
ENSG00000198198 SZT2 802630 sc-eQTL 7.63e-01 0.066 0.219 0.051 B_Activated L2
ENSG00000198520 ARMH1 -482180 sc-eQTL 7.55e-02 -0.383 0.214 0.051 B_Activated L2
ENSG00000066135 KDM4A 542363 sc-eQTL 5.68e-01 -0.125 0.218 0.053 NK_HLA L2
ENSG00000066322 ELOVL1 824438 sc-eQTL 4.68e-01 0.151 0.207 0.053 NK_HLA L2
ENSG00000070785 EIF2B3 -794210 sc-eQTL 3.84e-01 0.184 0.211 0.053 NK_HLA L2
ENSG00000117395 EBNA1BP2 921576 sc-eQTL 8.46e-01 0.0436 0.225 0.053 NK_HLA L2
ENSG00000117408 IPO13 245562 sc-eQTL 8.54e-01 -0.0365 0.198 0.053 NK_HLA L2
ENSG00000117410 ATP6V0B 218025 sc-eQTL 5.39e-01 -0.126 0.205 0.053 NK_HLA L2
ENSG00000117411 B4GALT2 213569 sc-eQTL 5.51e-01 -0.114 0.191 0.053 NK_HLA L2
ENSG00000117419 ERI3 -162748 sc-eQTL 4.43e-01 -0.164 0.214 0.053 NK_HLA L2
ENSG00000126088 UROD -818438 sc-eQTL 1.28e-02 0.528 0.21 0.053 NK_HLA L2
ENSG00000126091 ST3GAL3 486688 sc-eQTL 1.65e-01 0.294 0.211 0.053 NK_HLA L2
ENSG00000126106 TMEM53 -481969 sc-eQTL 5.50e-01 0.121 0.202 0.053 NK_HLA L2
ENSG00000126107 HECTD3 -818812 sc-eQTL 1.96e-01 0.292 0.225 0.053 NK_HLA L2
ENSG00000132768 DPH2 222512 sc-eQTL 8.02e-01 -0.0547 0.218 0.053 NK_HLA L2
ENSG00000142937 RPS8 -582739 sc-eQTL 4.00e-02 0.189 0.0914 0.053 NK_HLA L2
ENSG00000159214 CCDC24 201153 sc-eQTL 1.46e-01 -0.285 0.195 0.053 NK_HLA L2
ENSG00000159479 MED8 802704 sc-eQTL 3.98e-01 -0.192 0.227 0.053 NK_HLA L2
ENSG00000173846 PLK3 -607865 sc-eQTL 5.82e-01 0.105 0.191 0.053 NK_HLA L2
ENSG00000178028 DMAP1 -20943 sc-eQTL 9.83e-01 -0.00468 0.215 0.053 NK_HLA L2
ENSG00000178922 HYI 738523 sc-eQTL 7.32e-01 0.0703 0.205 0.053 NK_HLA L2
ENSG00000187147 RNF220 -212682 sc-eQTL 3.13e-01 0.186 0.184 0.053 NK_HLA L2
ENSG00000198198 SZT2 802630 sc-eQTL 8.75e-01 -0.0287 0.182 0.053 NK_HLA L2
ENSG00000066135 KDM4A 542363 sc-eQTL 4.44e-01 0.163 0.213 0.051 intMono L2
ENSG00000066322 ELOVL1 824438 sc-eQTL 4.32e-01 0.147 0.187 0.051 intMono L2
ENSG00000070785 EIF2B3 -794210 sc-eQTL 4.45e-01 -0.164 0.214 0.051 intMono L2
ENSG00000117395 EBNA1BP2 921576 sc-eQTL 5.80e-01 -0.118 0.213 0.051 intMono L2
ENSG00000117408 IPO13 245562 sc-eQTL 1.01e-01 -0.327 0.198 0.051 intMono L2
ENSG00000117410 ATP6V0B 218025 sc-eQTL 7.10e-01 -0.048 0.129 0.051 intMono L2
ENSG00000117419 ERI3 -162748 sc-eQTL 6.32e-01 -0.101 0.211 0.051 intMono L2
ENSG00000117425 PTCH2 -650741 sc-eQTL 2.87e-01 0.186 0.174 0.051 intMono L2
ENSG00000126088 UROD -818438 sc-eQTL 4.21e-01 -0.168 0.209 0.051 intMono L2
ENSG00000126091 ST3GAL3 486688 sc-eQTL 9.50e-01 -0.0126 0.202 0.051 intMono L2
ENSG00000126106 TMEM53 -481969 sc-eQTL 3.75e-01 0.175 0.197 0.051 intMono L2
ENSG00000126107 HECTD3 -818812 sc-eQTL 4.64e-01 0.151 0.206 0.051 intMono L2
ENSG00000132768 DPH2 222512 sc-eQTL 8.84e-01 -0.0299 0.205 0.051 intMono L2
ENSG00000142937 RPS8 -582739 sc-eQTL 7.29e-01 0.0306 0.0881 0.051 intMono L2
ENSG00000159214 CCDC24 201153 sc-eQTL 4.44e-01 0.148 0.193 0.051 intMono L2
ENSG00000159479 MED8 802704 sc-eQTL 1.02e-01 0.273 0.166 0.051 intMono L2
ENSG00000173846 PLK3 -607865 sc-eQTL 2.18e-01 -0.18 0.146 0.051 intMono L2
ENSG00000178028 DMAP1 -20943 sc-eQTL 1.86e-02 -0.492 0.207 0.051 intMono L2
ENSG00000178922 HYI 738523 sc-eQTL 1.27e-01 -0.295 0.193 0.051 intMono L2
ENSG00000187147 RNF220 -212682 sc-eQTL 8.79e-01 -0.0283 0.185 0.051 intMono L2
ENSG00000198198 SZT2 802630 sc-eQTL 9.92e-01 -0.00196 0.2 0.051 intMono L2
ENSG00000198520 ARMH1 -482180 sc-eQTL 5.46e-01 0.129 0.214 0.051 intMono L2
ENSG00000222009 BTBD19 -615970 sc-eQTL 8.51e-02 -0.337 0.194 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066322 ELOVL1 824438 eQTL 0.0414 0.0629 0.0308 0.0 0.0 0.0702
ENSG00000117408 IPO13 245562 eQTL 3.79e-06 0.142 0.0306 0.0 0.0 0.0702
ENSG00000117410 ATP6V0B 218025 eQTL 0.000547 0.0627 0.0181 0.0 0.0 0.0702
ENSG00000117411 B4GALT2 213569 eQTL 0.0795 0.0862 0.0491 0.00121 0.0 0.0702
ENSG00000142949 PTPRF 667325 pQTL 0.00354 -0.142 0.0486 0.0 0.0 0.0751
ENSG00000159214 CCDC24 201153 eQTL 0.00204 0.215 0.0696 0.0 0.0 0.0702
ENSG00000178028 DMAP1 -20943 eQTL 4.6700000000000005e-37 -0.481 0.0362 0.0489 0.047 0.0702
ENSG00000229431 AL139289.1 807399 eQTL 0.00663 0.201 0.074 0.00167 0.0 0.0702

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066322 ELOVL1 824438 2.67e-07 1.3e-07 4.48e-08 1.81e-07 9.25e-08 9.76e-08 1.61e-07 5.43e-08 1.45e-07 5.42e-08 1.55e-07 9e-08 1.47e-07 6.76e-08 5.91e-08 7.36e-08 4.17e-08 1.27e-07 5.82e-08 4.04e-08 1.13e-07 1.27e-07 1.44e-07 3.23e-08 1.55e-07 1.21e-07 1.07e-07 9.61e-08 1.12e-07 1.07e-07 9.92e-08 3.87e-08 3.16e-08 8.25e-08 7.36e-08 3.65e-08 5.11e-08 9.25e-08 6.54e-08 3.87e-08 4.37e-08 1.46e-07 5.24e-08 1.32e-08 4.92e-08 1.99e-08 1.21e-07 3.81e-09 4.9e-08
ENSG00000117399 \N 833531 2.67e-07 1.3e-07 4.47e-08 1.86e-07 9.16e-08 9.76e-08 1.53e-07 5.43e-08 1.45e-07 4.94e-08 1.55e-07 8.68e-08 1.47e-07 6.76e-08 6.04e-08 7.36e-08 4.17e-08 1.27e-07 5.82e-08 4.04e-08 1.13e-07 1.27e-07 1.44e-07 3.23e-08 1.55e-07 1.21e-07 1.07e-07 9.65e-08 1.12e-07 1.07e-07 9.92e-08 3.87e-08 3.16e-08 8.34e-08 7.51e-08 3.62e-08 5.11e-08 9.23e-08 6.54e-08 4.02e-08 4.39e-08 1.46e-07 5.27e-08 1.34e-08 5.15e-08 1.99e-08 1.19e-07 3.81e-09 4.9e-08
ENSG00000117408 IPO13 245562 1.28e-06 1.01e-06 3.28e-07 1.14e-06 3.48e-07 5.92e-07 1.61e-06 3.85e-07 1.49e-06 5.98e-07 1.88e-06 7.43e-07 2.34e-06 2.81e-07 5.58e-07 9.27e-07 9.33e-07 7e-07 8.48e-07 6.4e-07 6.81e-07 1.7e-06 8.98e-07 5.74e-07 2.23e-06 5.53e-07 9.18e-07 7.14e-07 1.31e-06 1.24e-06 7.47e-07 1.55e-07 1.98e-07 7.04e-07 5.49e-07 4.62e-07 5.04e-07 1.69e-07 3.76e-07 3.23e-07 2.78e-07 1.71e-06 1.09e-07 8.98e-08 2.5e-07 1.25e-07 2.3e-07 5.35e-08 1.56e-07
ENSG00000132768 \N 222512 1.32e-06 1.4e-06 2.28e-07 1.27e-06 3.69e-07 6.06e-07 1.51e-06 4.04e-07 1.68e-06 6.44e-07 2.04e-06 8.75e-07 2.61e-06 2.82e-07 4.96e-07 9.54e-07 9.41e-07 1.02e-06 7.7e-07 5.17e-07 7.85e-07 1.89e-06 1.12e-06 5.89e-07 2.44e-06 7.59e-07 1.02e-06 9.43e-07 1.5e-06 1.31e-06 8.13e-07 2.06e-07 2.62e-07 5.82e-07 5.17e-07 5.26e-07 7.49e-07 2.46e-07 4.84e-07 2.98e-07 2.83e-07 2.11e-06 2.19e-07 1.31e-07 3.12e-07 1.97e-07 2.09e-07 5.95e-08 1.97e-07
ENSG00000178028 DMAP1 -20943 1.47e-05 1.69e-05 2.96e-06 9.91e-06 3.02e-06 6.77e-06 2.11e-05 3.09e-06 1.54e-05 8.01e-06 2.09e-05 7.98e-06 2.97e-05 6.49e-06 4.98e-06 9.51e-06 9.09e-06 1.39e-05 4.42e-06 4.38e-06 8.43e-06 1.63e-05 1.69e-05 5.78e-06 2.71e-05 5.25e-06 7.74e-06 6.92e-06 1.65e-05 1.81e-05 1.12e-05 1.17e-06 1.65e-06 4.85e-06 6.94e-06 4.16e-06 2.04e-06 2.71e-06 3.44e-06 2.37e-06 1.52e-06 2.34e-05 2.52e-06 2.66e-07 1.88e-06 2.67e-06 2.62e-06 1.3e-06 1.04e-06