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Genes within 1Mb (chr1:44191606:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 541457 sc-eQTL 9.19e-01 0.0242 0.237 0.051 B_Activated L2
ENSG00000066322 ELOVL1 823532 sc-eQTL 7.40e-01 0.0813 0.245 0.051 B_Activated L2
ENSG00000070785 EIF2B3 -795116 sc-eQTL 1.45e-01 0.329 0.225 0.051 B_Activated L2
ENSG00000117395 EBNA1BP2 920670 sc-eQTL 3.51e-01 -0.229 0.245 0.051 B_Activated L2
ENSG00000117408 IPO13 244656 sc-eQTL 9.31e-01 0.0182 0.211 0.051 B_Activated L2
ENSG00000117410 ATP6V0B 217119 sc-eQTL 8.28e-01 -0.0453 0.208 0.051 B_Activated L2
ENSG00000117411 B4GALT2 212663 sc-eQTL 2.25e-01 -0.235 0.193 0.051 B_Activated L2
ENSG00000117419 ERI3 -163654 sc-eQTL 1.48e-01 -0.355 0.244 0.051 B_Activated L2
ENSG00000117425 PTCH2 -651647 sc-eQTL 5.30e-01 -0.0864 0.137 0.051 B_Activated L2
ENSG00000126088 UROD -819344 sc-eQTL 1.85e-01 0.315 0.236 0.051 B_Activated L2
ENSG00000126091 ST3GAL3 485782 sc-eQTL 4.08e-01 -0.183 0.221 0.051 B_Activated L2
ENSG00000126106 TMEM53 -482875 sc-eQTL 4.50e-01 0.152 0.2 0.051 B_Activated L2
ENSG00000126107 HECTD3 -819718 sc-eQTL 5.46e-01 0.139 0.23 0.051 B_Activated L2
ENSG00000132768 DPH2 221606 sc-eQTL 2.79e-01 -0.251 0.231 0.051 B_Activated L2
ENSG00000142937 RPS8 -583645 sc-eQTL 2.99e-01 0.123 0.118 0.051 B_Activated L2
ENSG00000159214 CCDC24 200247 sc-eQTL 7.26e-01 -0.0699 0.199 0.051 B_Activated L2
ENSG00000159479 MED8 801798 sc-eQTL 4.76e-01 0.164 0.23 0.051 B_Activated L2
ENSG00000173846 PLK3 -608771 sc-eQTL 3.74e-01 0.191 0.215 0.051 B_Activated L2
ENSG00000178028 DMAP1 -21849 sc-eQTL 4.27e-01 -0.193 0.242 0.051 B_Activated L2
ENSG00000178922 HYI 737617 sc-eQTL 2.99e-01 -0.234 0.224 0.051 B_Activated L2
ENSG00000187147 RNF220 -213588 sc-eQTL 8.32e-01 0.0469 0.22 0.051 B_Activated L2
ENSG00000198198 SZT2 801724 sc-eQTL 7.63e-01 0.066 0.219 0.051 B_Activated L2
ENSG00000198520 ARMH1 -483086 sc-eQTL 7.55e-02 -0.383 0.214 0.051 B_Activated L2
ENSG00000066135 KDM4A 541457 sc-eQTL 5.68e-01 -0.125 0.218 0.053 NK_HLA L2
ENSG00000066322 ELOVL1 823532 sc-eQTL 4.68e-01 0.151 0.207 0.053 NK_HLA L2
ENSG00000070785 EIF2B3 -795116 sc-eQTL 3.84e-01 0.184 0.211 0.053 NK_HLA L2
ENSG00000117395 EBNA1BP2 920670 sc-eQTL 8.46e-01 0.0436 0.225 0.053 NK_HLA L2
ENSG00000117408 IPO13 244656 sc-eQTL 8.54e-01 -0.0365 0.198 0.053 NK_HLA L2
ENSG00000117410 ATP6V0B 217119 sc-eQTL 5.39e-01 -0.126 0.205 0.053 NK_HLA L2
ENSG00000117411 B4GALT2 212663 sc-eQTL 5.51e-01 -0.114 0.191 0.053 NK_HLA L2
ENSG00000117419 ERI3 -163654 sc-eQTL 4.43e-01 -0.164 0.214 0.053 NK_HLA L2
ENSG00000126088 UROD -819344 sc-eQTL 1.28e-02 0.528 0.21 0.053 NK_HLA L2
ENSG00000126091 ST3GAL3 485782 sc-eQTL 1.65e-01 0.294 0.211 0.053 NK_HLA L2
ENSG00000126106 TMEM53 -482875 sc-eQTL 5.50e-01 0.121 0.202 0.053 NK_HLA L2
ENSG00000126107 HECTD3 -819718 sc-eQTL 1.96e-01 0.292 0.225 0.053 NK_HLA L2
ENSG00000132768 DPH2 221606 sc-eQTL 8.02e-01 -0.0547 0.218 0.053 NK_HLA L2
ENSG00000142937 RPS8 -583645 sc-eQTL 4.00e-02 0.189 0.0914 0.053 NK_HLA L2
ENSG00000159214 CCDC24 200247 sc-eQTL 1.46e-01 -0.285 0.195 0.053 NK_HLA L2
ENSG00000159479 MED8 801798 sc-eQTL 3.98e-01 -0.192 0.227 0.053 NK_HLA L2
ENSG00000173846 PLK3 -608771 sc-eQTL 5.82e-01 0.105 0.191 0.053 NK_HLA L2
ENSG00000178028 DMAP1 -21849 sc-eQTL 9.83e-01 -0.00468 0.215 0.053 NK_HLA L2
ENSG00000178922 HYI 737617 sc-eQTL 7.32e-01 0.0703 0.205 0.053 NK_HLA L2
ENSG00000187147 RNF220 -213588 sc-eQTL 3.13e-01 0.186 0.184 0.053 NK_HLA L2
ENSG00000198198 SZT2 801724 sc-eQTL 8.75e-01 -0.0287 0.182 0.053 NK_HLA L2
ENSG00000066135 KDM4A 541457 sc-eQTL 4.44e-01 0.163 0.213 0.051 intMono L2
ENSG00000066322 ELOVL1 823532 sc-eQTL 4.32e-01 0.147 0.187 0.051 intMono L2
ENSG00000070785 EIF2B3 -795116 sc-eQTL 4.45e-01 -0.164 0.214 0.051 intMono L2
ENSG00000117395 EBNA1BP2 920670 sc-eQTL 5.80e-01 -0.118 0.213 0.051 intMono L2
ENSG00000117408 IPO13 244656 sc-eQTL 1.01e-01 -0.327 0.198 0.051 intMono L2
ENSG00000117410 ATP6V0B 217119 sc-eQTL 7.10e-01 -0.048 0.129 0.051 intMono L2
ENSG00000117419 ERI3 -163654 sc-eQTL 6.32e-01 -0.101 0.211 0.051 intMono L2
ENSG00000117425 PTCH2 -651647 sc-eQTL 2.87e-01 0.186 0.174 0.051 intMono L2
ENSG00000126088 UROD -819344 sc-eQTL 4.21e-01 -0.168 0.209 0.051 intMono L2
ENSG00000126091 ST3GAL3 485782 sc-eQTL 9.50e-01 -0.0126 0.202 0.051 intMono L2
ENSG00000126106 TMEM53 -482875 sc-eQTL 3.75e-01 0.175 0.197 0.051 intMono L2
ENSG00000126107 HECTD3 -819718 sc-eQTL 4.64e-01 0.151 0.206 0.051 intMono L2
ENSG00000132768 DPH2 221606 sc-eQTL 8.84e-01 -0.0299 0.205 0.051 intMono L2
ENSG00000142937 RPS8 -583645 sc-eQTL 7.29e-01 0.0306 0.0881 0.051 intMono L2
ENSG00000159214 CCDC24 200247 sc-eQTL 4.44e-01 0.148 0.193 0.051 intMono L2
ENSG00000159479 MED8 801798 sc-eQTL 1.02e-01 0.273 0.166 0.051 intMono L2
ENSG00000173846 PLK3 -608771 sc-eQTL 2.18e-01 -0.18 0.146 0.051 intMono L2
ENSG00000178028 DMAP1 -21849 sc-eQTL 1.86e-02 -0.492 0.207 0.051 intMono L2
ENSG00000178922 HYI 737617 sc-eQTL 1.27e-01 -0.295 0.193 0.051 intMono L2
ENSG00000187147 RNF220 -213588 sc-eQTL 8.79e-01 -0.0283 0.185 0.051 intMono L2
ENSG00000198198 SZT2 801724 sc-eQTL 9.92e-01 -0.00196 0.2 0.051 intMono L2
ENSG00000198520 ARMH1 -483086 sc-eQTL 5.46e-01 0.129 0.214 0.051 intMono L2
ENSG00000222009 BTBD19 -616876 sc-eQTL 8.51e-02 -0.337 0.194 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066322 ELOVL1 823532 eQTL 0.0292 0.067 0.0307 0.0 0.0 0.0707
ENSG00000117408 IPO13 244656 eQTL 2.98e-06 0.143 0.0305 0.0 0.0 0.0707
ENSG00000117410 ATP6V0B 217119 eQTL 0.000594 0.0621 0.018 0.0 0.0 0.0707
ENSG00000142949 PTPRF 666419 pQTL 0.00448 -0.138 0.0486 0.0 0.0 0.0755
ENSG00000159214 CCDC24 200247 eQTL 0.00138 0.223 0.0694 0.0 0.0 0.0707
ENSG00000178028 DMAP1 -21849 eQTL 6.9e-36 -0.472 0.0362 0.0032 0.00444 0.0707
ENSG00000229431 AL139289.1 806493 eQTL 0.00762 0.197 0.0738 0.00153 0.0 0.0707

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066322 ELOVL1 823532 2.8e-07 1.33e-07 5.82e-08 2.05e-07 9.82e-08 8.33e-08 1.73e-07 5.68e-08 1.5e-07 7.6e-08 1.73e-07 1.19e-07 1.71e-07 7.95e-08 5.82e-08 7.97e-08 4.18e-08 1.51e-07 7.12e-08 5.2e-08 1.22e-07 1.31e-07 1.58e-07 3.22e-08 1.68e-07 1.23e-07 1.17e-07 1.06e-07 1.24e-07 1.07e-07 1.08e-07 3.68e-08 3.46e-08 8.7e-08 3.07e-08 2.74e-08 4.62e-08 7.51e-08 6.42e-08 3.75e-08 5.39e-08 1.46e-07 3.35e-08 7.51e-09 3.41e-08 1.19e-08 8.67e-08 2.13e-09 4.91e-08
ENSG00000117399 \N 832625 2.8e-07 1.36e-07 5.72e-08 2.01e-07 9.82e-08 8.33e-08 1.73e-07 5.68e-08 1.5e-07 6.75e-08 1.63e-07 1.15e-07 1.69e-07 7.95e-08 5.82e-08 7.97e-08 4.18e-08 1.51e-07 6.92e-08 5.2e-08 1.22e-07 1.26e-07 1.58e-07 2.68e-08 1.65e-07 1.23e-07 1.17e-07 1.04e-07 1.24e-07 1.05e-07 1.06e-07 3.9e-08 3.38e-08 8.89e-08 3.02e-08 2.68e-08 5.35e-08 7.63e-08 6.76e-08 3.67e-08 5.34e-08 1.46e-07 3.55e-08 7.61e-09 3.41e-08 1.55e-08 8.98e-08 2.13e-09 4.69e-08
ENSG00000117408 IPO13 244656 1.59e-06 2.09e-06 2.86e-07 1.28e-06 4.56e-07 7.87e-07 1.2e-06 5.72e-07 1.8e-06 7.42e-07 1.91e-06 1.46e-06 2.68e-06 6.9e-07 4.72e-07 1.06e-06 1.05e-06 1.29e-06 5.52e-07 7.92e-07 6.7e-07 1.96e-06 1.64e-06 9.49e-07 2.37e-06 1.01e-06 1.16e-06 1.1e-06 1.74e-06 1.5e-06 7.66e-07 2.48e-07 4.55e-07 6.49e-07 9.1e-07 6.59e-07 6.6e-07 4.62e-07 5.97e-07 2.14e-07 3.59e-07 2.12e-06 4.16e-07 1.74e-07 3.91e-07 2.99e-07 4.95e-07 2.25e-07 2.27e-07
ENSG00000117419 \N -163654 4.01e-06 4.48e-06 7.63e-07 2.04e-06 1.12e-06 1.23e-06 2.79e-06 1.03e-06 3.56e-06 2.01e-06 4.22e-06 3.3e-06 6.4e-06 1.64e-06 1.44e-06 2.49e-06 1.99e-06 2.4e-06 1.36e-06 9.89e-07 2.35e-06 4.27e-06 3.54e-06 1.81e-06 4.77e-06 1.33e-06 2.35e-06 1.55e-06 3.87e-06 3.29e-06 2.05e-06 5.76e-07 7.92e-07 1.72e-06 2.08e-06 8.71e-07 9.88e-07 4.94e-07 1.34e-06 3.63e-07 3.62e-07 4.29e-06 3.99e-07 1.86e-07 4.33e-07 5.17e-07 8.4e-07 4.27e-07 3.41e-07
ENSG00000132768 \N 221606 1.87e-06 2.66e-06 3.3e-07 1.69e-06 4.63e-07 8.34e-07 1.36e-06 6.57e-07 1.79e-06 9.48e-07 2.11e-06 1.28e-06 3.35e-06 1.13e-06 8.08e-07 1.38e-06 1.12e-06 1.73e-06 7.34e-07 1.13e-06 1.11e-06 2.71e-06 1.95e-06 9.95e-07 2.73e-06 1.2e-06 1.29e-06 1.46e-06 1.84e-06 1.66e-06 1.15e-06 3.23e-07 5.19e-07 1.12e-06 1.02e-06 8.66e-07 7.76e-07 4.74e-07 8.73e-07 3.32e-07 3.05e-07 2.82e-06 5.93e-07 1.99e-07 3.4e-07 3.38e-07 8.08e-07 1.98e-07 2.05e-07
ENSG00000178028 DMAP1 -21849 1.73e-05 2.16e-05 4.24e-06 1.24e-05 3.83e-06 1.02e-05 2.91e-05 3.73e-06 2e-05 1.09e-05 2.68e-05 1.04e-05 3.65e-05 9.33e-06 5.68e-06 1.15e-05 1.12e-05 1.77e-05 6.32e-06 5.32e-06 9.78e-06 2.18e-05 2.11e-05 6.81e-06 3.2e-05 5.97e-06 8.97e-06 8.93e-06 2.3e-05 2.05e-05 1.3e-05 1.61e-06 2.29e-06 6.01e-06 9.01e-06 4.59e-06 2.56e-06 2.89e-06 3.71e-06 2.92e-06 1.67e-06 2.49e-05 2.64e-06 3.18e-07 2.06e-06 2.98e-06 3.35e-06 1.5e-06 1.38e-06