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Genes within 1Mb (chr1:44168516:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 518367 sc-eQTL 9.19e-01 0.0242 0.237 0.051 B_Activated L2
ENSG00000066322 ELOVL1 800442 sc-eQTL 7.40e-01 0.0813 0.245 0.051 B_Activated L2
ENSG00000070785 EIF2B3 -818206 sc-eQTL 1.45e-01 0.329 0.225 0.051 B_Activated L2
ENSG00000117395 EBNA1BP2 897580 sc-eQTL 3.51e-01 -0.229 0.245 0.051 B_Activated L2
ENSG00000117408 IPO13 221566 sc-eQTL 9.31e-01 0.0182 0.211 0.051 B_Activated L2
ENSG00000117410 ATP6V0B 194029 sc-eQTL 8.28e-01 -0.0453 0.208 0.051 B_Activated L2
ENSG00000117411 B4GALT2 189573 sc-eQTL 2.25e-01 -0.235 0.193 0.051 B_Activated L2
ENSG00000117419 ERI3 -186744 sc-eQTL 1.48e-01 -0.355 0.244 0.051 B_Activated L2
ENSG00000117425 PTCH2 -674737 sc-eQTL 5.30e-01 -0.0864 0.137 0.051 B_Activated L2
ENSG00000126088 UROD -842434 sc-eQTL 1.85e-01 0.315 0.236 0.051 B_Activated L2
ENSG00000126091 ST3GAL3 462692 sc-eQTL 4.08e-01 -0.183 0.221 0.051 B_Activated L2
ENSG00000126106 TMEM53 -505965 sc-eQTL 4.50e-01 0.152 0.2 0.051 B_Activated L2
ENSG00000126107 HECTD3 -842808 sc-eQTL 5.46e-01 0.139 0.23 0.051 B_Activated L2
ENSG00000132768 DPH2 198516 sc-eQTL 2.79e-01 -0.251 0.231 0.051 B_Activated L2
ENSG00000142937 RPS8 -606735 sc-eQTL 2.99e-01 0.123 0.118 0.051 B_Activated L2
ENSG00000159214 CCDC24 177157 sc-eQTL 7.26e-01 -0.0699 0.199 0.051 B_Activated L2
ENSG00000159479 MED8 778708 sc-eQTL 4.76e-01 0.164 0.23 0.051 B_Activated L2
ENSG00000173846 PLK3 -631861 sc-eQTL 3.74e-01 0.191 0.215 0.051 B_Activated L2
ENSG00000178028 DMAP1 -44939 sc-eQTL 4.27e-01 -0.193 0.242 0.051 B_Activated L2
ENSG00000178922 HYI 714527 sc-eQTL 2.99e-01 -0.234 0.224 0.051 B_Activated L2
ENSG00000187147 RNF220 -236678 sc-eQTL 8.32e-01 0.0469 0.22 0.051 B_Activated L2
ENSG00000198198 SZT2 778634 sc-eQTL 7.63e-01 0.066 0.219 0.051 B_Activated L2
ENSG00000198520 ARMH1 -506176 sc-eQTL 7.55e-02 -0.383 0.214 0.051 B_Activated L2
ENSG00000066135 KDM4A 518367 sc-eQTL 5.68e-01 -0.125 0.218 0.053 NK_HLA L2
ENSG00000066322 ELOVL1 800442 sc-eQTL 4.68e-01 0.151 0.207 0.053 NK_HLA L2
ENSG00000070785 EIF2B3 -818206 sc-eQTL 3.84e-01 0.184 0.211 0.053 NK_HLA L2
ENSG00000117395 EBNA1BP2 897580 sc-eQTL 8.46e-01 0.0436 0.225 0.053 NK_HLA L2
ENSG00000117408 IPO13 221566 sc-eQTL 8.54e-01 -0.0365 0.198 0.053 NK_HLA L2
ENSG00000117410 ATP6V0B 194029 sc-eQTL 5.39e-01 -0.126 0.205 0.053 NK_HLA L2
ENSG00000117411 B4GALT2 189573 sc-eQTL 5.51e-01 -0.114 0.191 0.053 NK_HLA L2
ENSG00000117419 ERI3 -186744 sc-eQTL 4.43e-01 -0.164 0.214 0.053 NK_HLA L2
ENSG00000126088 UROD -842434 sc-eQTL 1.28e-02 0.528 0.21 0.053 NK_HLA L2
ENSG00000126091 ST3GAL3 462692 sc-eQTL 1.65e-01 0.294 0.211 0.053 NK_HLA L2
ENSG00000126106 TMEM53 -505965 sc-eQTL 5.50e-01 0.121 0.202 0.053 NK_HLA L2
ENSG00000126107 HECTD3 -842808 sc-eQTL 1.96e-01 0.292 0.225 0.053 NK_HLA L2
ENSG00000132768 DPH2 198516 sc-eQTL 8.02e-01 -0.0547 0.218 0.053 NK_HLA L2
ENSG00000142937 RPS8 -606735 sc-eQTL 4.00e-02 0.189 0.0914 0.053 NK_HLA L2
ENSG00000159214 CCDC24 177157 sc-eQTL 1.46e-01 -0.285 0.195 0.053 NK_HLA L2
ENSG00000159479 MED8 778708 sc-eQTL 3.98e-01 -0.192 0.227 0.053 NK_HLA L2
ENSG00000173846 PLK3 -631861 sc-eQTL 5.82e-01 0.105 0.191 0.053 NK_HLA L2
ENSG00000178028 DMAP1 -44939 sc-eQTL 9.83e-01 -0.00468 0.215 0.053 NK_HLA L2
ENSG00000178922 HYI 714527 sc-eQTL 7.32e-01 0.0703 0.205 0.053 NK_HLA L2
ENSG00000187147 RNF220 -236678 sc-eQTL 3.13e-01 0.186 0.184 0.053 NK_HLA L2
ENSG00000198198 SZT2 778634 sc-eQTL 8.75e-01 -0.0287 0.182 0.053 NK_HLA L2
ENSG00000066135 KDM4A 518367 sc-eQTL 4.44e-01 0.163 0.213 0.051 intMono L2
ENSG00000066322 ELOVL1 800442 sc-eQTL 4.32e-01 0.147 0.187 0.051 intMono L2
ENSG00000070785 EIF2B3 -818206 sc-eQTL 4.45e-01 -0.164 0.214 0.051 intMono L2
ENSG00000117395 EBNA1BP2 897580 sc-eQTL 5.80e-01 -0.118 0.213 0.051 intMono L2
ENSG00000117408 IPO13 221566 sc-eQTL 1.01e-01 -0.327 0.198 0.051 intMono L2
ENSG00000117410 ATP6V0B 194029 sc-eQTL 7.10e-01 -0.048 0.129 0.051 intMono L2
ENSG00000117419 ERI3 -186744 sc-eQTL 6.32e-01 -0.101 0.211 0.051 intMono L2
ENSG00000117425 PTCH2 -674737 sc-eQTL 2.87e-01 0.186 0.174 0.051 intMono L2
ENSG00000126088 UROD -842434 sc-eQTL 4.21e-01 -0.168 0.209 0.051 intMono L2
ENSG00000126091 ST3GAL3 462692 sc-eQTL 9.50e-01 -0.0126 0.202 0.051 intMono L2
ENSG00000126106 TMEM53 -505965 sc-eQTL 3.75e-01 0.175 0.197 0.051 intMono L2
ENSG00000126107 HECTD3 -842808 sc-eQTL 4.64e-01 0.151 0.206 0.051 intMono L2
ENSG00000132768 DPH2 198516 sc-eQTL 8.84e-01 -0.0299 0.205 0.051 intMono L2
ENSG00000142937 RPS8 -606735 sc-eQTL 7.29e-01 0.0306 0.0881 0.051 intMono L2
ENSG00000159214 CCDC24 177157 sc-eQTL 4.44e-01 0.148 0.193 0.051 intMono L2
ENSG00000159479 MED8 778708 sc-eQTL 1.02e-01 0.273 0.166 0.051 intMono L2
ENSG00000173846 PLK3 -631861 sc-eQTL 2.18e-01 -0.18 0.146 0.051 intMono L2
ENSG00000178028 DMAP1 -44939 sc-eQTL 1.86e-02 -0.492 0.207 0.051 intMono L2
ENSG00000178922 HYI 714527 sc-eQTL 1.27e-01 -0.295 0.193 0.051 intMono L2
ENSG00000187147 RNF220 -236678 sc-eQTL 8.79e-01 -0.0283 0.185 0.051 intMono L2
ENSG00000198198 SZT2 778634 sc-eQTL 9.92e-01 -0.00196 0.2 0.051 intMono L2
ENSG00000198520 ARMH1 -506176 sc-eQTL 5.46e-01 0.129 0.214 0.051 intMono L2
ENSG00000222009 BTBD19 -639966 sc-eQTL 8.51e-02 -0.337 0.194 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066322 ELOVL1 800442 eQTL 0.0458 0.061 0.0305 0.0 0.0 0.0707
ENSG00000117408 IPO13 221566 eQTL 3.28e-06 0.142 0.0303 0.0 0.0 0.0707
ENSG00000117410 ATP6V0B 194029 eQTL 0.000506 0.0625 0.0179 0.0 0.0 0.0707
ENSG00000117411 B4GALT2 189573 eQTL 0.0712 0.0878 0.0486 0.00127 0.0 0.0707
ENSG00000117419 ERI3 -186744 eQTL 0.0482 -0.0471 0.0238 0.0 0.0 0.0707
ENSG00000142949 PTPRF 643329 pQTL 0.00373 -0.14 0.0481 0.0 0.0 0.0759
ENSG00000159214 CCDC24 177157 eQTL 0.00174 0.216 0.0689 0.0 0.0 0.0707
ENSG00000178028 DMAP1 -44939 eQTL 5.7000000000000006e-37 -0.475 0.0358 0.0554 0.0474 0.0707
ENSG00000229431 AL139289.1 783403 eQTL 0.00734 0.197 0.0733 0.00161 0.0 0.0707

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066322 ELOVL1 800442 3.07e-07 1.53e-07 6.04e-08 2.2e-07 1.05e-07 8.37e-08 1.99e-07 5.56e-08 1.44e-07 8.53e-08 1.63e-07 1.2e-07 1.95e-07 8e-08 5.43e-08 7.98e-08 4.31e-08 1.77e-07 7.09e-08 5.46e-08 1.22e-07 1.39e-07 1.62e-07 3.49e-08 2.02e-07 1.31e-07 1.19e-07 1.1e-07 1.31e-07 1.07e-07 1.09e-07 4.47e-08 3.29e-08 9.78e-08 3.36e-08 3.22e-08 4.28e-08 8.57e-08 6.3e-08 5.56e-08 6e-08 1.52e-07 4.7e-08 1.09e-08 3.48e-08 1.01e-08 8.46e-08 2e-09 4.83e-08
ENSG00000117408 IPO13 221566 1.99e-06 2.45e-06 2.88e-07 1.54e-06 4.78e-07 7.68e-07 1.29e-06 5.61e-07 1.77e-06 7.42e-07 1.92e-06 1.45e-06 3.11e-06 9.33e-07 4.61e-07 1.23e-06 9.86e-07 1.55e-06 5.95e-07 7.96e-07 7.87e-07 1.92e-06 1.75e-06 9.76e-07 2.73e-06 1.12e-06 1.15e-06 1.35e-06 1.78e-06 1.67e-06 9.62e-07 2.46e-07 4.73e-07 9.49e-07 9.21e-07 6.4e-07 7.35e-07 3.71e-07 6.79e-07 2.58e-07 2.29e-07 2.77e-06 4.36e-07 2.07e-07 3.4e-07 3.47e-07 4.15e-07 2.63e-07 2.79e-07
ENSG00000117419 ERI3 -186744 3.06e-06 2.75e-06 3.44e-07 2.07e-06 6.1e-07 7.8e-07 2.11e-06 7.58e-07 2.06e-06 1.13e-06 2.52e-06 1.46e-06 3.66e-06 1.43e-06 9.32e-07 1.66e-06 1.46e-06 2.22e-06 1.37e-06 1.36e-06 1.38e-06 3.05e-06 2.59e-06 1.17e-06 4.05e-06 1.13e-06 1.38e-06 1.84e-06 2.71e-06 2.13e-06 1.9e-06 3.11e-07 5.91e-07 1.22e-06 1.43e-06 9.27e-07 7.47e-07 4.75e-07 1.18e-06 4.16e-07 2.39e-07 3.43e-06 5.57e-07 1.89e-07 3.4e-07 4.03e-07 8.02e-07 1.95e-07 1.79e-07
ENSG00000132768 \N 198516 2.7e-06 2.57e-06 3.31e-07 1.84e-06 4.79e-07 8.62e-07 1.85e-06 6.3e-07 1.86e-06 9.91e-07 2.53e-06 1.3e-06 3.49e-06 1.44e-06 8.27e-07 1.54e-06 1.17e-06 2.23e-06 9.64e-07 1.15e-06 1.12e-06 2.77e-06 2.33e-06 1.05e-06 3.6e-06 1.37e-06 1.31e-06 1.74e-06 2.15e-06 1.84e-06 1.72e-06 3.05e-07 5.2e-07 1.24e-06 1.23e-06 8.84e-07 8.34e-07 3.84e-07 1.03e-06 3.78e-07 1.96e-07 3.26e-06 4.58e-07 1.9e-07 2.74e-07 3.27e-07 6.93e-07 2.42e-07 1.98e-07
ENSG00000178028 DMAP1 -44939 9.98e-06 1.18e-05 1.93e-06 6.53e-06 2.45e-06 5.16e-06 1.28e-05 2.14e-06 1.05e-05 5.44e-06 1.42e-05 6.02e-06 1.85e-05 3.97e-06 3.51e-06 6.75e-06 5.78e-06 9.51e-06 3.39e-06 3.15e-06 6.5e-06 1.05e-05 1.02e-05 3.75e-06 1.87e-05 4.42e-06 6.02e-06 4.85e-06 1.31e-05 1.15e-05 6.76e-06 9.7e-07 1.22e-06 3.73e-06 4.89e-06 2.77e-06 1.78e-06 2.04e-06 2.08e-06 1.27e-06 1.12e-06 1.39e-05 1.46e-06 2.5e-07 1.02e-06 1.96e-06 1.82e-06 6.86e-07 4.79e-07