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Genes within 1Mb (chr1:44105155:A:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 455006 sc-eQTL 2.06e-01 -0.27 0.213 0.05 CD4_CTL L2
ENSG00000066322 ELOVL1 737081 sc-eQTL 9.52e-01 -0.0121 0.2 0.05 CD4_CTL L2
ENSG00000070785 EIF2B3 -881567 sc-eQTL 4.92e-02 -0.422 0.213 0.05 CD4_CTL L2
ENSG00000117395 EBNA1BP2 834219 sc-eQTL 8.71e-01 -0.0355 0.219 0.05 CD4_CTL L2
ENSG00000117408 IPO13 158205 sc-eQTL 3.20e-01 -0.198 0.199 0.05 CD4_CTL L2
ENSG00000117410 ATP6V0B 130668 sc-eQTL 7.75e-01 0.058 0.203 0.05 CD4_CTL L2
ENSG00000117419 ERI3 -250105 sc-eQTL 1.39e-01 -0.319 0.215 0.05 CD4_CTL L2
ENSG00000126088 UROD -905795 sc-eQTL 8.35e-01 -0.0447 0.214 0.05 CD4_CTL L2
ENSG00000126091 ST3GAL3 399331 sc-eQTL 4.41e-01 -0.165 0.214 0.05 CD4_CTL L2
ENSG00000126107 HECTD3 -906169 sc-eQTL 6.22e-01 0.102 0.206 0.05 CD4_CTL L2
ENSG00000132768 DPH2 135155 sc-eQTL 7.46e-02 0.373 0.208 0.05 CD4_CTL L2
ENSG00000142937 RPS8 -670096 sc-eQTL 2.37e-02 -0.198 0.0867 0.05 CD4_CTL L2
ENSG00000159479 MED8 715347 sc-eQTL 4.22e-01 0.163 0.203 0.05 CD4_CTL L2
ENSG00000173846 PLK3 -695222 sc-eQTL 9.65e-01 -0.00672 0.155 0.05 CD4_CTL L2
ENSG00000178028 DMAP1 -108300 sc-eQTL 9.99e-01 0.000324 0.22 0.05 CD4_CTL L2
ENSG00000178922 HYI 651166 sc-eQTL 9.12e-01 -0.0209 0.188 0.05 CD4_CTL L2
ENSG00000187147 RNF220 -300039 sc-eQTL 6.22e-01 0.086 0.174 0.05 CD4_CTL L2
ENSG00000198198 SZT2 715273 sc-eQTL 3.65e-01 -0.183 0.202 0.05 CD4_CTL L2
ENSG00000198520 ARMH1 -569537 sc-eQTL 3.70e-02 0.33 0.157 0.05 CD4_CTL L2
ENSG00000066135 KDM4A 455006 sc-eQTL 5.21e-02 -0.386 0.198 0.051 CD8_TCM L2
ENSG00000066322 ELOVL1 737081 sc-eQTL 4.09e-01 -0.167 0.202 0.051 CD8_TCM L2
ENSG00000070785 EIF2B3 -881567 sc-eQTL 2.96e-01 0.213 0.203 0.051 CD8_TCM L2
ENSG00000117395 EBNA1BP2 834219 sc-eQTL 4.76e-01 0.145 0.203 0.051 CD8_TCM L2
ENSG00000117408 IPO13 158205 sc-eQTL 1.58e-01 0.269 0.19 0.051 CD8_TCM L2
ENSG00000117410 ATP6V0B 130668 sc-eQTL 6.84e-01 -0.0683 0.167 0.051 CD8_TCM L2
ENSG00000117419 ERI3 -250105 sc-eQTL 1.46e-02 0.503 0.204 0.051 CD8_TCM L2
ENSG00000126088 UROD -905795 sc-eQTL 2.37e-02 0.444 0.195 0.051 CD8_TCM L2
ENSG00000126091 ST3GAL3 399331 sc-eQTL 2.45e-01 0.236 0.202 0.051 CD8_TCM L2
ENSG00000126107 HECTD3 -906169 sc-eQTL 4.04e-01 0.174 0.208 0.051 CD8_TCM L2
ENSG00000132768 DPH2 135155 sc-eQTL 8.00e-01 0.0509 0.2 0.051 CD8_TCM L2
ENSG00000142937 RPS8 -670096 sc-eQTL 5.33e-01 0.0653 0.105 0.051 CD8_TCM L2
ENSG00000159479 MED8 715347 sc-eQTL 8.28e-01 0.0416 0.191 0.051 CD8_TCM L2
ENSG00000173846 PLK3 -695222 sc-eQTL 1.84e-01 0.184 0.138 0.051 CD8_TCM L2
ENSG00000178028 DMAP1 -108300 sc-eQTL 1.23e-01 0.321 0.207 0.051 CD8_TCM L2
ENSG00000178922 HYI 651166 sc-eQTL 2.92e-01 0.196 0.186 0.051 CD8_TCM L2
ENSG00000187147 RNF220 -300039 sc-eQTL 6.89e-01 -0.0695 0.174 0.051 CD8_TCM L2
ENSG00000198198 SZT2 715273 sc-eQTL 6.17e-01 -0.093 0.186 0.051 CD8_TCM L2
ENSG00000198520 ARMH1 -569537 sc-eQTL 8.67e-02 0.285 0.166 0.051 CD8_TCM L2
ENSG00000066135 KDM4A 455006 sc-eQTL 7.16e-01 0.086 0.236 0.061 gdT L2
ENSG00000066322 ELOVL1 737081 sc-eQTL 4.45e-01 0.177 0.232 0.061 gdT L2
ENSG00000070785 EIF2B3 -881567 sc-eQTL 9.74e-01 -0.00733 0.223 0.061 gdT L2
ENSG00000117395 EBNA1BP2 834219 sc-eQTL 9.66e-01 0.00987 0.233 0.061 gdT L2
ENSG00000117399 CDC20 746174 sc-eQTL 5.00e-01 0.106 0.157 0.061 gdT L2
ENSG00000117408 IPO13 158205 sc-eQTL 2.82e-03 0.648 0.213 0.061 gdT L2
ENSG00000117410 ATP6V0B 130668 sc-eQTL 2.11e-01 -0.25 0.199 0.061 gdT L2
ENSG00000117411 B4GALT2 126212 sc-eQTL 8.74e-01 -0.0326 0.206 0.061 gdT L2
ENSG00000117419 ERI3 -250105 sc-eQTL 9.75e-01 0.00757 0.242 0.061 gdT L2
ENSG00000126088 UROD -905795 sc-eQTL 6.24e-01 -0.1 0.204 0.061 gdT L2
ENSG00000126091 ST3GAL3 399331 sc-eQTL 1.00e-01 -0.364 0.22 0.061 gdT L2
ENSG00000126106 TMEM53 -569326 sc-eQTL 2.92e-01 -0.219 0.207 0.061 gdT L2
ENSG00000126107 HECTD3 -906169 sc-eQTL 7.01e-01 0.0909 0.236 0.061 gdT L2
ENSG00000132768 DPH2 135155 sc-eQTL 7.57e-01 0.0677 0.219 0.061 gdT L2
ENSG00000142937 RPS8 -670096 sc-eQTL 4.79e-01 -0.0621 0.0874 0.061 gdT L2
ENSG00000142945 KIF2C -634663 sc-eQTL 3.33e-01 -0.125 0.129 0.061 gdT L2
ENSG00000159479 MED8 715347 sc-eQTL 4.57e-01 -0.164 0.22 0.061 gdT L2
ENSG00000173846 PLK3 -695222 sc-eQTL 9.04e-01 0.0179 0.148 0.061 gdT L2
ENSG00000178028 DMAP1 -108300 sc-eQTL 1.74e-01 0.301 0.22 0.061 gdT L2
ENSG00000178922 HYI 651166 sc-eQTL 4.80e-01 0.162 0.229 0.061 gdT L2
ENSG00000187147 RNF220 -300039 sc-eQTL 1.55e-01 0.261 0.182 0.061 gdT L2
ENSG00000198198 SZT2 715273 sc-eQTL 7.97e-01 -0.054 0.21 0.061 gdT L2
ENSG00000198520 ARMH1 -569537 sc-eQTL 2.95e-01 0.21 0.2 0.061 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066056 TIE1 804173 pQTL 0.00334 -0.189 0.0644 0.0 0.0 0.0513
ENSG00000117407 ARTN 171835 pQTL 0.0584 0.105 0.0553 0.00102 0.0 0.0513
ENSG00000142945 KIF2C -634663 eQTL 0.034 -0.0767 0.0361 0.0 0.0 0.0535
ENSG00000159214 CCDC24 113796 eQTL 6.41e-06 -0.343 0.0756 0.0 0.0 0.0535
ENSG00000178028 DMAP1 -108300 eQTL 7.05e-06 0.192 0.0426 0.0 0.0 0.0535

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066056 TIE1 804173 3.27e-07 1.59e-07 6.41e-08 2.22e-07 1.07e-07 7.75e-08 2.5e-07 7.12e-08 1.96e-07 1.11e-07 1.86e-07 1.59e-07 2.38e-07 8.15e-08 6.12e-08 1.06e-07 5.57e-08 2.21e-07 7.53e-08 6.29e-08 1.33e-07 1.9e-07 1.75e-07 4.17e-08 2.28e-07 1.86e-07 1.29e-07 1.28e-07 1.34e-07 1.29e-07 1.26e-07 4.23e-08 3.74e-08 9.98e-08 4.78e-08 4.77e-08 5.26e-08 7.25e-08 5.84e-08 5.96e-08 5.04e-08 1.59e-07 3.4e-08 1.52e-08 3.36e-08 6.68e-09 7.13e-08 2.16e-09 4.72e-08
ENSG00000142945 KIF2C -634663 5.85e-07 2.89e-07 1.08e-07 2.53e-07 1.1e-07 1.54e-07 4.05e-07 1.09e-07 3.32e-07 2.06e-07 3.92e-07 3.08e-07 4.74e-07 9.18e-08 1.27e-07 1.84e-07 1.62e-07 3.12e-07 1.69e-07 9.01e-08 1.91e-07 2.96e-07 2.67e-07 1.06e-07 4.11e-07 2.34e-07 2.23e-07 1.85e-07 2.4e-07 2.52e-07 1.88e-07 8.14e-08 5.53e-08 1.37e-07 1.56e-07 7.86e-08 9.9e-08 6.89e-08 5.54e-08 7.55e-08 4.27e-08 2.65e-07 2.28e-08 1.43e-08 8.01e-08 1.3e-08 9.98e-08 3.09e-09 5.71e-08
ENSG00000159214 CCDC24 113796 4.65e-06 5.05e-06 6.5e-07 3.21e-06 1.76e-06 1.56e-06 6.05e-06 1.29e-06 4.88e-06 2.76e-06 6.15e-06 3.2e-06 7.74e-06 1.97e-06 1.04e-06 3.9e-06 1.97e-06 3.98e-06 1.65e-06 1.69e-06 2.65e-06 5.36e-06 4.68e-06 1.93e-06 7.87e-06 2.19e-06 2.68e-06 1.74e-06 5.37e-06 4.97e-06 2.87e-06 5.77e-07 7.8e-07 2.73e-06 2.05e-06 1.85e-06 1.39e-06 5.58e-07 1.38e-06 7.91e-07 9.87e-07 5.84e-06 6.3e-07 1.33e-07 7.67e-07 9.77e-07 1.05e-06 6.19e-07 5.88e-07
ENSG00000178028 DMAP1 -108300 4.82e-06 5.13e-06 7.77e-07 3.45e-06 1.84e-06 1.57e-06 7e-06 1.34e-06 4.5e-06 3.02e-06 6.7e-06 3.03e-06 8.51e-06 1.76e-06 9.19e-07 4.31e-06 2.24e-06 3.93e-06 1.92e-06 1.99e-06 2.85e-06 5.54e-06 4.68e-06 2.22e-06 8.28e-06 2.4e-06 2.87e-06 1.76e-06 5.8e-06 5.42e-06 2.57e-06 7.36e-07 6.76e-07 2.78e-06 1.96e-06 2.09e-06 1.55e-06 6.8e-07 1.27e-06 8.74e-07 1.04e-06 6.63e-06 6.59e-07 1.58e-07 6.8e-07 8.44e-07 9.71e-07 7.12e-07 4.78e-07