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Genes within 1Mb (chr1:44098208:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 448059 sc-eQTL 2.06e-01 -0.27 0.213 0.05 CD4_CTL L2
ENSG00000066322 ELOVL1 730134 sc-eQTL 9.52e-01 -0.0121 0.2 0.05 CD4_CTL L2
ENSG00000070785 EIF2B3 -888514 sc-eQTL 4.92e-02 -0.422 0.213 0.05 CD4_CTL L2
ENSG00000117395 EBNA1BP2 827272 sc-eQTL 8.71e-01 -0.0355 0.219 0.05 CD4_CTL L2
ENSG00000117408 IPO13 151258 sc-eQTL 3.20e-01 -0.198 0.199 0.05 CD4_CTL L2
ENSG00000117410 ATP6V0B 123721 sc-eQTL 7.75e-01 0.058 0.203 0.05 CD4_CTL L2
ENSG00000117419 ERI3 -257052 sc-eQTL 1.39e-01 -0.319 0.215 0.05 CD4_CTL L2
ENSG00000126088 UROD -912742 sc-eQTL 8.35e-01 -0.0447 0.214 0.05 CD4_CTL L2
ENSG00000126091 ST3GAL3 392384 sc-eQTL 4.41e-01 -0.165 0.214 0.05 CD4_CTL L2
ENSG00000126107 HECTD3 -913116 sc-eQTL 6.22e-01 0.102 0.206 0.05 CD4_CTL L2
ENSG00000132768 DPH2 128208 sc-eQTL 7.46e-02 0.373 0.208 0.05 CD4_CTL L2
ENSG00000142937 RPS8 -677043 sc-eQTL 2.37e-02 -0.198 0.0867 0.05 CD4_CTL L2
ENSG00000159479 MED8 708400 sc-eQTL 4.22e-01 0.163 0.203 0.05 CD4_CTL L2
ENSG00000173846 PLK3 -702169 sc-eQTL 9.65e-01 -0.00672 0.155 0.05 CD4_CTL L2
ENSG00000178028 DMAP1 -115247 sc-eQTL 9.99e-01 0.000324 0.22 0.05 CD4_CTL L2
ENSG00000178922 HYI 644219 sc-eQTL 9.12e-01 -0.0209 0.188 0.05 CD4_CTL L2
ENSG00000187147 RNF220 -306986 sc-eQTL 6.22e-01 0.086 0.174 0.05 CD4_CTL L2
ENSG00000198198 SZT2 708326 sc-eQTL 3.65e-01 -0.183 0.202 0.05 CD4_CTL L2
ENSG00000198520 ARMH1 -576484 sc-eQTL 3.70e-02 0.33 0.157 0.05 CD4_CTL L2
ENSG00000066135 KDM4A 448059 sc-eQTL 5.21e-02 -0.386 0.198 0.051 CD8_TCM L2
ENSG00000066322 ELOVL1 730134 sc-eQTL 4.09e-01 -0.167 0.202 0.051 CD8_TCM L2
ENSG00000070785 EIF2B3 -888514 sc-eQTL 2.96e-01 0.213 0.203 0.051 CD8_TCM L2
ENSG00000117395 EBNA1BP2 827272 sc-eQTL 4.76e-01 0.145 0.203 0.051 CD8_TCM L2
ENSG00000117408 IPO13 151258 sc-eQTL 1.58e-01 0.269 0.19 0.051 CD8_TCM L2
ENSG00000117410 ATP6V0B 123721 sc-eQTL 6.84e-01 -0.0683 0.167 0.051 CD8_TCM L2
ENSG00000117419 ERI3 -257052 sc-eQTL 1.46e-02 0.503 0.204 0.051 CD8_TCM L2
ENSG00000126088 UROD -912742 sc-eQTL 2.37e-02 0.444 0.195 0.051 CD8_TCM L2
ENSG00000126091 ST3GAL3 392384 sc-eQTL 2.45e-01 0.236 0.202 0.051 CD8_TCM L2
ENSG00000126107 HECTD3 -913116 sc-eQTL 4.04e-01 0.174 0.208 0.051 CD8_TCM L2
ENSG00000132768 DPH2 128208 sc-eQTL 8.00e-01 0.0509 0.2 0.051 CD8_TCM L2
ENSG00000142937 RPS8 -677043 sc-eQTL 5.33e-01 0.0653 0.105 0.051 CD8_TCM L2
ENSG00000159479 MED8 708400 sc-eQTL 8.28e-01 0.0416 0.191 0.051 CD8_TCM L2
ENSG00000173846 PLK3 -702169 sc-eQTL 1.84e-01 0.184 0.138 0.051 CD8_TCM L2
ENSG00000178028 DMAP1 -115247 sc-eQTL 1.23e-01 0.321 0.207 0.051 CD8_TCM L2
ENSG00000178922 HYI 644219 sc-eQTL 2.92e-01 0.196 0.186 0.051 CD8_TCM L2
ENSG00000187147 RNF220 -306986 sc-eQTL 6.89e-01 -0.0695 0.174 0.051 CD8_TCM L2
ENSG00000198198 SZT2 708326 sc-eQTL 6.17e-01 -0.093 0.186 0.051 CD8_TCM L2
ENSG00000198520 ARMH1 -576484 sc-eQTL 8.67e-02 0.285 0.166 0.051 CD8_TCM L2
ENSG00000066135 KDM4A 448059 sc-eQTL 7.16e-01 0.086 0.236 0.061 gdT L2
ENSG00000066322 ELOVL1 730134 sc-eQTL 4.45e-01 0.177 0.232 0.061 gdT L2
ENSG00000070785 EIF2B3 -888514 sc-eQTL 9.74e-01 -0.00733 0.223 0.061 gdT L2
ENSG00000117395 EBNA1BP2 827272 sc-eQTL 9.66e-01 0.00987 0.233 0.061 gdT L2
ENSG00000117399 CDC20 739227 sc-eQTL 5.00e-01 0.106 0.157 0.061 gdT L2
ENSG00000117408 IPO13 151258 sc-eQTL 2.82e-03 0.648 0.213 0.061 gdT L2
ENSG00000117410 ATP6V0B 123721 sc-eQTL 2.11e-01 -0.25 0.199 0.061 gdT L2
ENSG00000117411 B4GALT2 119265 sc-eQTL 8.74e-01 -0.0326 0.206 0.061 gdT L2
ENSG00000117419 ERI3 -257052 sc-eQTL 9.75e-01 0.00757 0.242 0.061 gdT L2
ENSG00000126088 UROD -912742 sc-eQTL 6.24e-01 -0.1 0.204 0.061 gdT L2
ENSG00000126091 ST3GAL3 392384 sc-eQTL 1.00e-01 -0.364 0.22 0.061 gdT L2
ENSG00000126106 TMEM53 -576273 sc-eQTL 2.92e-01 -0.219 0.207 0.061 gdT L2
ENSG00000126107 HECTD3 -913116 sc-eQTL 7.01e-01 0.0909 0.236 0.061 gdT L2
ENSG00000132768 DPH2 128208 sc-eQTL 7.57e-01 0.0677 0.219 0.061 gdT L2
ENSG00000142937 RPS8 -677043 sc-eQTL 4.79e-01 -0.0621 0.0874 0.061 gdT L2
ENSG00000142945 KIF2C -641610 sc-eQTL 3.33e-01 -0.125 0.129 0.061 gdT L2
ENSG00000159479 MED8 708400 sc-eQTL 4.57e-01 -0.164 0.22 0.061 gdT L2
ENSG00000173846 PLK3 -702169 sc-eQTL 9.04e-01 0.0179 0.148 0.061 gdT L2
ENSG00000178028 DMAP1 -115247 sc-eQTL 1.74e-01 0.301 0.22 0.061 gdT L2
ENSG00000178922 HYI 644219 sc-eQTL 4.80e-01 0.162 0.229 0.061 gdT L2
ENSG00000187147 RNF220 -306986 sc-eQTL 1.55e-01 0.261 0.182 0.061 gdT L2
ENSG00000198198 SZT2 708326 sc-eQTL 7.97e-01 -0.054 0.21 0.061 gdT L2
ENSG00000198520 ARMH1 -576484 sc-eQTL 2.95e-01 0.21 0.2 0.061 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066056 TIE1 797226 pQTL 0.0116 -0.165 0.0652 0.0 0.0 0.0499
ENSG00000142945 KIF2C -641610 eQTL 0.0437 -0.0742 0.0367 0.0 0.0 0.0515
ENSG00000159214 CCDC24 106849 eQTL 6.89e-06 -0.348 0.0769 0.0 0.0 0.0515
ENSG00000178028 DMAP1 -115247 eQTL 3.68e-06 0.202 0.0433 0.0 0.0 0.0515

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066056 TIE1 797226 2.8e-07 1.34e-07 5.72e-08 1.83e-07 1.03e-07 9.05e-08 1.6e-07 5.43e-08 1.47e-07 6.08e-08 1.57e-07 1.08e-07 1.59e-07 7.37e-08 5.98e-08 7.23e-08 4.24e-08 1.44e-07 6.32e-08 4.8e-08 1.25e-07 1.25e-07 1.44e-07 2.87e-08 1.63e-07 1.26e-07 1.18e-07 1.01e-07 1.22e-07 9.49e-08 1.02e-07 3.54e-08 3.43e-08 8.72e-08 3.46e-08 3.14e-08 5.29e-08 9.03e-08 6.86e-08 3.82e-08 5.44e-08 1.46e-07 5.08e-08 1.49e-08 3.41e-08 1.77e-08 1.11e-07 1.92e-09 4.8e-08
ENSG00000142945 KIF2C -641610 3.21e-07 1.56e-07 6.86e-08 2.24e-07 1.08e-07 8.75e-08 2.16e-07 6.12e-08 1.75e-07 1.03e-07 1.69e-07 1.37e-07 2.29e-07 8.07e-08 6.12e-08 9.6e-08 4.63e-08 1.91e-07 7.36e-08 6.03e-08 1.24e-07 1.7e-07 1.68e-07 4.07e-08 2.17e-07 1.43e-07 1.31e-07 1.26e-07 1.39e-07 1.29e-07 1.21e-07 4.77e-08 4.23e-08 9.3e-08 5.65e-08 3.18e-08 4.06e-08 7.68e-08 6.62e-08 6.19e-08 4.58e-08 1.55e-07 3.25e-08 1.09e-08 3.66e-08 6.83e-09 7.26e-08 0.0 4.97e-08
ENSG00000159214 CCDC24 106849 4.57e-06 4.77e-06 6.91e-07 2.65e-06 1.63e-06 1.67e-06 4.25e-06 1.03e-06 5.12e-06 2.41e-06 5.26e-06 3.43e-06 7.05e-06 2.47e-06 1.33e-06 3.81e-06 1.78e-06 3.53e-06 1.54e-06 1.19e-06 3.02e-06 4.95e-06 4.58e-06 1.48e-06 6.16e-06 1.96e-06 2.47e-06 1.87e-06 4.46e-06 4.45e-06 2.7e-06 4.38e-07 6.32e-07 1.65e-06 2.13e-06 1.17e-06 9.63e-07 4.57e-07 8.13e-07 5.31e-07 7.36e-07 5.58e-06 4.01e-07 1.65e-07 7.74e-07 1.03e-06 1.13e-06 6.45e-07 4.68e-07
ENSG00000178028 DMAP1 -115247 4.26e-06 4.75e-06 8.35e-07 2.43e-06 1.62e-06 1.33e-06 3.65e-06 9.78e-07 4.53e-06 2.22e-06 4.71e-06 3.37e-06 7.42e-06 2.15e-06 1.35e-06 3.26e-06 1.98e-06 3.22e-06 1.45e-06 1.02e-06 2.89e-06 4.53e-06 3.78e-06 1.44e-06 5.24e-06 1.72e-06 2.6e-06 1.69e-06 4.26e-06 4.16e-06 2.19e-06 5.08e-07 5.05e-07 1.44e-06 2.15e-06 9.86e-07 9.16e-07 4.07e-07 9.31e-07 4.56e-07 7.35e-07 5.32e-06 4.01e-07 1.66e-07 6.09e-07 7.09e-07 9.92e-07 5.05e-07 4.54e-07