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Genes within 1Mb (chr1:44066988:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 416839 sc-eQTL 4.03e-01 -0.18 0.214 0.05 CD4_CTL L2
ENSG00000066322 ELOVL1 698914 sc-eQTL 4.41e-01 0.155 0.201 0.05 CD4_CTL L2
ENSG00000070785 EIF2B3 -919734 sc-eQTL 1.34e-02 -0.531 0.213 0.05 CD4_CTL L2
ENSG00000117395 EBNA1BP2 796052 sc-eQTL 8.49e-01 0.0418 0.22 0.05 CD4_CTL L2
ENSG00000117408 IPO13 120038 sc-eQTL 1.44e-01 -0.292 0.199 0.05 CD4_CTL L2
ENSG00000117410 ATP6V0B 92501 sc-eQTL 1.54e-01 0.29 0.203 0.05 CD4_CTL L2
ENSG00000117419 ERI3 -288272 sc-eQTL 3.67e-01 -0.196 0.216 0.05 CD4_CTL L2
ENSG00000126088 UROD -943962 sc-eQTL 8.41e-01 0.0433 0.215 0.05 CD4_CTL L2
ENSG00000126091 ST3GAL3 361164 sc-eQTL 4.79e-01 -0.153 0.215 0.05 CD4_CTL L2
ENSG00000126107 HECTD3 -944336 sc-eQTL 7.76e-01 0.0591 0.207 0.05 CD4_CTL L2
ENSG00000132768 DPH2 96988 sc-eQTL 7.83e-02 0.371 0.209 0.05 CD4_CTL L2
ENSG00000142937 RPS8 -708263 sc-eQTL 3.10e-03 -0.258 0.0863 0.05 CD4_CTL L2
ENSG00000159479 MED8 677180 sc-eQTL 4.74e-01 0.146 0.204 0.05 CD4_CTL L2
ENSG00000173846 PLK3 -733389 sc-eQTL 9.00e-01 -0.0196 0.156 0.05 CD4_CTL L2
ENSG00000178028 DMAP1 -146467 sc-eQTL 3.72e-01 -0.197 0.221 0.05 CD4_CTL L2
ENSG00000178922 HYI 612999 sc-eQTL 7.09e-01 0.0705 0.189 0.05 CD4_CTL L2
ENSG00000187147 RNF220 -338206 sc-eQTL 8.85e-01 -0.0254 0.175 0.05 CD4_CTL L2
ENSG00000198198 SZT2 677106 sc-eQTL 2.87e-01 -0.216 0.203 0.05 CD4_CTL L2
ENSG00000198520 ARMH1 -607704 sc-eQTL 6.84e-02 0.29 0.158 0.05 CD4_CTL L2
ENSG00000066135 KDM4A 416839 sc-eQTL 5.55e-01 0.143 0.241 0.058 gdT L2
ENSG00000066322 ELOVL1 698914 sc-eQTL 7.69e-01 0.0697 0.237 0.058 gdT L2
ENSG00000070785 EIF2B3 -919734 sc-eQTL 6.25e-01 -0.111 0.228 0.058 gdT L2
ENSG00000117395 EBNA1BP2 796052 sc-eQTL 7.71e-01 0.0693 0.238 0.058 gdT L2
ENSG00000117399 CDC20 708007 sc-eQTL 7.12e-01 0.0594 0.16 0.058 gdT L2
ENSG00000117408 IPO13 120038 sc-eQTL 1.78e-03 0.691 0.217 0.058 gdT L2
ENSG00000117410 ATP6V0B 92501 sc-eQTL 4.39e-01 -0.158 0.204 0.058 gdT L2
ENSG00000117411 B4GALT2 88045 sc-eQTL 6.14e-01 -0.106 0.21 0.058 gdT L2
ENSG00000117419 ERI3 -288272 sc-eQTL 7.44e-01 0.081 0.247 0.058 gdT L2
ENSG00000126088 UROD -943962 sc-eQTL 9.94e-01 0.0017 0.209 0.058 gdT L2
ENSG00000126091 ST3GAL3 361164 sc-eQTL 7.20e-02 -0.407 0.224 0.058 gdT L2
ENSG00000126106 TMEM53 -607493 sc-eQTL 5.41e-01 -0.13 0.212 0.058 gdT L2
ENSG00000126107 HECTD3 -944336 sc-eQTL 9.62e-01 0.0114 0.242 0.058 gdT L2
ENSG00000132768 DPH2 96988 sc-eQTL 6.98e-01 -0.0869 0.223 0.058 gdT L2
ENSG00000142937 RPS8 -708263 sc-eQTL 3.84e-01 -0.0778 0.0892 0.058 gdT L2
ENSG00000142945 KIF2C -672830 sc-eQTL 9.50e-01 0.00834 0.132 0.058 gdT L2
ENSG00000159479 MED8 677180 sc-eQTL 3.28e-01 -0.221 0.224 0.058 gdT L2
ENSG00000173846 PLK3 -733389 sc-eQTL 6.96e-01 0.0592 0.151 0.058 gdT L2
ENSG00000178028 DMAP1 -146467 sc-eQTL 1.34e-01 0.338 0.225 0.058 gdT L2
ENSG00000178922 HYI 612999 sc-eQTL 6.55e-01 0.105 0.234 0.058 gdT L2
ENSG00000187147 RNF220 -338206 sc-eQTL 3.33e-01 0.182 0.187 0.058 gdT L2
ENSG00000198198 SZT2 677106 sc-eQTL 9.29e-01 0.019 0.214 0.058 gdT L2
ENSG00000198520 ARMH1 -607704 sc-eQTL 2.64e-01 0.228 0.204 0.058 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117407 ARTN 133668 pQTL 0.0232 0.14 0.0616 0.00153 0.0 0.0397
ENSG00000159214 CCDC24 75629 eQTL 2.51e-06 -0.396 0.0836 0.0 0.0 0.0422
ENSG00000178028 DMAP1 -146467 eQTL 4.39e-05 0.194 0.0472 0.0 0.0 0.0422

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066056 \N 766006 2.64e-07 1.25e-07 4.91e-08 2.05e-07 9.16e-08 9.9e-08 1.44e-07 5.37e-08 1.41e-07 4.57e-08 1.62e-07 7.78e-08 1.41e-07 6.56e-08 6e-08 7.26e-08 3.94e-08 1.14e-07 6.32e-08 4.31e-08 1.08e-07 1.23e-07 1.32e-07 3.79e-08 1.37e-07 1.16e-07 1.1e-07 9.57e-08 1.05e-07 1.07e-07 9.64e-08 3.68e-08 3.16e-08 8.44e-08 5.99e-08 3.93e-08 5.42e-08 8.76e-08 6.55e-08 4.02e-08 4.46e-08 1.33e-07 5.27e-08 1.06e-08 5.75e-08 1.83e-08 1.19e-07 3.92e-09 4.73e-08
ENSG00000117425 \N -776265 2.64e-07 1.25e-07 4.91e-08 2.01e-07 9.16e-08 9.76e-08 1.44e-07 5.37e-08 1.41e-07 4.57e-08 1.6e-07 7.78e-08 1.41e-07 6.56e-08 6e-08 7.26e-08 3.94e-08 1.14e-07 6.07e-08 4.23e-08 1.08e-07 1.23e-07 1.32e-07 3.79e-08 1.37e-07 1.16e-07 1.07e-07 9.36e-08 1.05e-07 1.07e-07 9.64e-08 3.66e-08 3.16e-08 8.44e-08 6.34e-08 3.93e-08 5.58e-08 8.63e-08 6.56e-08 4.02e-08 4.51e-08 1.31e-07 5.08e-08 1.05e-08 5.75e-08 1.83e-08 1.21e-07 3.95e-09 4.79e-08
ENSG00000159214 CCDC24 75629 1.01e-05 1.32e-05 1.98e-06 9.25e-06 2.35e-06 5e-06 1.18e-05 2.08e-06 1.09e-05 5.73e-06 1.5e-05 6.41e-06 1.9e-05 4.67e-06 3.01e-06 6.74e-06 5.73e-06 8e-06 3.39e-06 3.12e-06 6.01e-06 1.09e-05 9.61e-06 3.32e-06 2.07e-05 3.9e-06 7.14e-06 4.84e-06 1.22e-05 9.19e-06 7.58e-06 1.06e-06 1.27e-06 3.3e-06 6.02e-06 2.68e-06 1.82e-06 2e-06 1.62e-06 1.03e-06 9.92e-07 1.6e-05 1.45e-06 2.62e-07 7.38e-07 1.82e-06 1.93e-06 7.67e-07 4.49e-07
ENSG00000178028 DMAP1 -146467 4.29e-06 5.49e-06 7.29e-07 3.69e-06 1.66e-06 1.72e-06 4.23e-06 9.78e-07 5.16e-06 2.42e-06 5.73e-06 3.54e-06 7.38e-06 1.95e-06 1.43e-06 2.68e-06 1.92e-06 2.75e-06 1.45e-06 1.15e-06 2.62e-06 4.79e-06 3.54e-06 1.57e-06 7.48e-06 1.36e-06 2.22e-06 1.77e-06 4.32e-06 4.18e-06 2.85e-06 3.85e-07 6.49e-07 1.87e-06 2.05e-06 8.35e-07 1.09e-06 4.72e-07 1.39e-06 4.29e-07 2.23e-07 5.67e-06 4.38e-07 1.66e-07 2.89e-07 6.22e-07 1.05e-06 2.38e-07 1.59e-07